snphb (LOC106572120)


Basic Information

Item Value
gene id snphb
gene name LOC106572120
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 48224647 ~ 48259337 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021615978.2
TGCTTGTCTTTCCTCACGCCGCTGCTCTCAAACGGATCTCATGCATCTCAGACCAGCCCCGTGCACGCGAGCAAAGGCACACCGCTCTGGCGGAGTCCTAACCAGAGACTGGAATCGCGGTGTAATCAAGAAAGGAGGCGGTATCTCCGGTGTAACGATGGAACTGTAAAATAAATACGGAAGGGGGAAACAGAGCTGAAgctgcagagtgagagagagacacagagatatacgaaaagagagggtgagagaggctgTCTGGCTCCATGTCTGCCCCTGCGCCTTCCACCCGGAGGTCTGTGTCAGGCTCACGCAGGTTTGACTACTGCAGGTTCATAGAGCTAGACTACATTCCAATGGAGACAGACTATATGGTTTCAATGCGCCCAACGGAACGAGGATATCTCACTACCAAGTCTCCGGAGCGGCACTGTCGAAGGACAGCTGCCCCAGTCAGCAACAGAGATCCCTATGGCAACGCCTctctcagcagcagcagcactaactCTGGCTCCTGCAAGGGCAGTGATTGCAGCCCCACCAAGGGgCGTCACATGAAGGCATACGCCTCATGTACAGATAACCATGGCATCCGCCCCCCTCCCCCAGAGCAGTACCTCACACCCCTGCAGCAGAAGGAGGTGTGTATCAGACACCTGCGGGCCCGCCTCAAGGAGTCAGTCGACAGGCTGCAGGACAGggaCTCTGAGATTGATGCATTGAAGACCCAGCTGTGTCGGATGCAGGAGGACTGGGTTGAAGAGGAGTGTCACCGCGTGGAGGCCCAGCTGGCCCTGAAAGAGGCGCACAGGGAGATCCAGCAGCTCAAGGATGTGGTGGACGTGGTGCGCACCAACCTCAGCTCCAGTGACTCCACCGACACCGGCGTCCAGAAATACTTTCAGGACATCAACGCCCAGAACCTCAAGCTGGAGAACCTGCTGCTCAGCATGGAGCTGGCTCAGAACGGGGTGGCCAATGAGCAGGAGGCTGCTGCAGCAAGAGGAGTGGCAGGGGGGTCTCGTGCTGGGAGGCCTGGGACTGCGGGGTCATGGCCTGGGAGTAGTCCCGCTGCATCAGGGACTGGGGGGGGTGGCTCCAAGAGTCTGTGTGGGTCCTGTGACGGCTCCCCCGCCCGTTCTCTGACCCATAGCTCTACCTACACCAAGCTGAGCGACCATGCGCTGGGGGATAAGAACGGGAACGGCCTGTCAGGGGAGGAGAACCATGACAGCGGCTTTGTGTGCTGTGGGGAGAGTCACAGTCACAGTGCAGCCAGCAGTCACAGGGCAGACAGCAGTCACAGGGCAGACTTACTCCTGGAGGCAGCCTTCCTATCTGAAGAGACAGCCTCACTGCTCAGCACCTACTCCCACCTGCCACAGTCCTCCACCTACGAGAAGCTGTGCACCGGGCAGGACAGGGTGGTGCCCCTGCGCTGTGCCATGGGTGGGGCGGGCAGCACCAACCACTCCTGTCTGTCCCACCACCACCTGTACCTCCACCACCTCAGGGAGCAGGCCGTCCAGACAGAGAGCTGCCCCGTCCCGGTGGGGTTGGGCTACGCCTCTGACCTGGACACCATCACCGAGCGCACCTTCCGCTCTCAGGCCTGCAGCCCCACCTCCACCTGGGTCTCAGATGAGGGAGACGACCTGGACTCGGTTACCATGACGTCAGTCACCATGACAACTCTCACAGCTACAACAGCTGAGCCCGCTCCTGCTACTCCTTTACCCAGCTCTGCCTCTGTCTCCTGTGCAGTGGATATGGCCTCCCTATCAGTGAAGGAGGATGGGAAGATGGTGGGAGAGTTGGAGAGGCATAGAGAGGTAGTGGGGGAGGGCGCAGTGGGGATGGTAGAGGTAGGcaagcagcaggaggaggaggaggtggggttgGTAGAGTTGTGTAAGCAGGAGGAGGTAAAGGTGCTGGGGTTGGTGAGGGAGGGGAAGCAGGGGGAGGTCAGGGAGTTAGATCTATATAATCAGAGGGAGGAGGTTTTGGAGGTGAAGAATCAGAGAGCGGTTGAGGAGGTGAGGTcagtggaggtggaggagcggCCCCACACCTCCCAGCCCAGGAGCAGCTCGCTACAGGAGATAGCTGGGGTGACAGTGGTGGAggttgatgatgatgaagaggctGAGGTTCAGGGAGCAGTAGGGGGAGCAGAGGAGTCTACCTCTTCTGAGTCTGGACCCGCAGTGAAGAGCTACTGGAGCCGCCACTTCCTGGTGGACCTGCTGGCAGTGGCTGTGCCCGTGGTTCCCACGGTGGCATGGCTGTGCCAGGGGGCACGGCGCGATGGACTGCCAATTTACCACTTCGGCTCACTGCTGCGTGGCTGCTGCACAGTGGCCCTCTCCTCCCTGCGCAGGGGCGGGGGAGTCAGGCACTACCCCGCGGGCACAGGTGGGGGAGCCATGGGGGGCACAGAGATCTGAGACAGGCCCCATGACAGCCTGGgaactgcacacacacagcactgcccTCTCTGGTCCTGGGTCCTGGGTTTGTCCTCCACCTGAAGTACTGGGTAAAGAAAGGAGGGGAGCGATGATTTTGAATAAATTATTCTGAAGACAGGACAGCCCCAGCAAACCATATAACCCTCTCTGGAGGTGGCCTCTTCCACCTCTTCTGCTAGACTGAGAAGGGACACCAGGATGTGTTATACTGACACTAAATGGTAGAACTGTACGATTCAATGGATACTGAATGGCCGGAGTGTGACTGATGGTGATTGTAAGCACTCTCTCTTGTGTGCAGGGAGACTGAAAGGTCTGTCCGTCACTGTGGCTCCCTTTATTGGGCCAGTTCCATTTTGACTCGTGTGTAAGAAATGTGTGTGATCACATGACGTGTGTTGTGAGTGTGCAGCATGTGTGTTCTTCTCTGTGTTGTATTGCGTTGTGTAGCCAAAGCACCTAGATGTCTGGAGGCAATCGCAGCCATGGCTGTGCAGTAGTTGGTATGCTCATTTACGAGTGAATGACTGAAGTCTTGACACATGGCAGTTGCCCCCTAAAGGTACCAGGCAAGCTGCTGCTGTACATTTCTGCTTCCTGTCACTGGTGTCCTAGATTAACAATCACTCTTGTAGCATTCAGTCCATGTCTGTCGTCCAAGTGTTAGTCATTCCAGACCCATGAaccagaaacatctcaagaaggAAGCAAATAGAGATATAATAATTGAAACTAAGtttatttttctttcaaaaataggAAAGGGATTATGGACTTTGTTGTTCTTGGGGTGTTTGCAGTGTCATGCCTGAGTTGGAAGAATCTGAGTGTCTTATTGTTTAGGGCTGTAATGGATGTAGTCATTGATGTGAAATAGTTGAAAGGCTGAGCAAggactgtactgtaatgtttaaATATAAGTCTTTGTTAGCGATTTCTGAGCCAAACAAGTGCTAACTGATGTCCACAAGATTGTGATGCAACCAACAAGAACAGTCCTTTGAGTGGAAGTACATTGAGTTCTTTAGAGAAGAAACAGGATATATCTTATTCCTTTAATTTATTAACAATGTTTTGCACTATTATTCACTTTATGAGGCTAAGCAACTACTTGAAGTCAAGTTTGTGTGTTTCCAAAGTCAGAAGCAAAACTGTGGCCGCATTCGAGTTTTTTTTTGTGTTCACTATACTTTCTCACAGGTACAACTGTCTAATGAAATATGTTTCAAAGTAAAGGTGCCATTTTTCTTTGAACACTGAAAACTGTTGCCTTCCGTCCATAACGTTCTTTTCCTGTAGTGTTTTAGCCGTAGGGAATATCCTTCTCAAAAATGTTTCGCTGCTTTCTGGAATGTGCGTTGGGATGTGCATTTGTGGTGTTGTTTCTTCTATCCCTCTTCATTTCTGCTGCTTGACAATcccttctgtgtgtgtttctgcagaTGTAACCTCTTCACCGTGACTTCCAGCACCTATGAATAGTGAAACACACGAGCAGCACTGACAAAATAGATTGAGTGGTGAATTAATGAAACGCTTGGGAGTTGTCTTACACACTTTTCAACGTCGTCATGTGCTTTAGATTTGAACACTTTCCACAACCCTGTTGGAATTTTGTATTGTGTCTTGATATTGTGCGTTGCTCTAGTTCTTCCCCGTCATGTTTCACATCATCATGACCTGTGAATGGTCCCCCTGCCATTTGTAAAGCCTGCTTGGTGTAAGTGGTTCAGGAAGCCTctgcattttttttattaaaagccATACTCCTTT
>XM_036988194.1
CAGCCTTTGCCTGTGGACCCATCCTGTGAAAGAAGCCTCATAGATCCTCATAGATCCTTCAACGATTGCCTGAGTAGGGCGATCTACGAGctgctcattgaacatcattCAGTGGCGATATTACACGGCGTGAGAGAGTGGACATGGTGGTTTGACGAGCTGAAgctgcagagtgagagagagacacagagatatacgaaaagagagggtgagagaggctgTCTGGCTCCATGTCTGCCCCTGCGCCTTCCACCCGGAGGTCTGTGTCAGGCTCACGCAGGTTTGACTACTGCAGGTTCATAGAGCTAGACTACATTCCAATGGAGACAGACTATATGGTTTCAATGCGCCCAACGGAACGAGGATATCTCACTACCAAGTCTCCGGAGCGGCACTGTCGAAGGACAGCTGCCCCAGTCAGCAACAGAGATCCCTATGGCAACGCCTctctcagcagcagcagcactaactCTGGCTCCTGCAAGGGCAGTGATTGCAGCCCCACCAAGGGgCGTCACATGAAGGCATACGCCTCATGTACAGATAACCATGGCATCCGCCCCCCTCCCCCAGAGCAGTACCTCACACCCCTGCAGCAGAAGGAGGTGTGTATCAGACACCTGCGGGCCCGCCTCAAGGAGTCAGTCGACAGGCTGCAGGACAGggaCTCTGAGATTGATGCATTGAAGACCCAGCTGTGTCGGATGCAGGAGGACTGGGTTGAAGAGGAGTGTCACCGCGTGGAGGCCCAGCTGGCCCTGAAAGAGGCGCACAGGGAGATCCAGCAGCTCAAGGATGTGGTGGACGTGGTGCGCACCAACCTCAGCTCCAGTGACTCCACCGACACCGGCGTCCAGAAATACTTTCAGGACATCAACGCCCAGAACCTCAAGCTGGAGAACCTGCTGCTCAGCATGGAGCTGGCTCAGAACGGGGTGGCCAATGAGCAGGAGGCTGCTGCAGCAAGAGGAGTGGCAGGGGGGTCTCGTGCTGGGAGGCCTGGGACTGCGGGGTCATGGCCTGGGAGTAGTCCCGCTGCATCAGGGACTGGGGGGGGTGGCTCCAAGAGTCTGTGTGGGTCCTGTGACGGCTCCCCCGCCCGTTCTCTGACCCATAGCTCTACCTACACCAAGCTGAGCGACCATGCGCTGGGGGATAAGAACGGGAACGGCCTGTCAGGGGAGGAGAACCATGACAGCGGCTTTGTGTGCTGTGGGGAGAGTCACAGTCACAGTGCAGCCAGCAGTCACAGGGCAGACAGCAGTCACAGGGCAGACTTACTCCTGGAGGCAGCCTTCCTATCTGAAGAGACAGCCTCACTGCTCAGCACCTACTCCCACCTGCCACAGTCCTCCACCTACGAGAAGCTGTGCACCGGGCAGGACAGGGTGGTGCCCCTGCGCTGTGCCATGGGTGGGGCGGGCAGCACCAACCACTCCTGTCTGTCCCACCACCACCTGTACCTCCACCACCTCAGGGAGCAGGCCGTCCAGACAGAGAGCTGCCCCGTCCCGGTGGGGTTGGGCTACGCCTCTGACCTGGACACCATCACCGAGCGCACCTTCCGCTCTCAGGCCTGCAGCCCCACCTCCACCTGGGTCTCAGATGAGGGAGACGACCTGGACTCGGTTACCATGACGTCAGTCACCATGACAACTCTCACAGCTACAACAGCTGAGCCCGCTCCTGCTACTCCTTTACCCAGCTCTGCCTCTGTCTCCTGTGCAGTGGATATGGCCTCCCTATCAGTGAAGGAGGATGGGAAGATGGTGGGAGAGTTGGAGAGGCATAGAGAGGTAGTGGGGGAGGGCGCAGTGGGGATGGTAGAGGTAGGcaagcagcaggaggaggaggaggtggggttgGTAGAGTTGTGTAAGCAGGAGGAGGTAAAGGTGCTGGGGTTGGTGAGGGAGGGGAAGCAGGGGGAGGTCAGGGAGTTAGATCTATATAATCAGAGGGAGGAGGTTTTGGAGGTGAAGAATCAGAGAGCGGTTGAGGAGGTGAGGTcagtggaggtggaggagcggCCCCACACCTCCCAGCCCAGGAGCAGCTCGCTACAGGAGATAGCTGGGGTGACAGTGGTGGAggttgatgatgatgaagaggctGAGGTTCAGGGAGCAGTAGGGGGAGCAGAGGAGTCTACCTCTTCTGAGTCTGGACCCGCAGTGAAGAGCTACTGGAGCCGCCACTTCCTGGTGGACCTGCTGGCAGTGGCTGTGCCCGTGGTTCCCACGGTGGCATGGCTGTGCCAGGGGGCACGGCGCGATGGACTGCCAATTTACCACTTCGGCTCACTGCTGCGTGGCTGCTGCACAGTGGCCCTCTCCTCCCTGCGCAGGGGCGGGGGAGTCAGGCACTACCCCGCGGGCACAGGTGGGGGAGCCATGGGGGGCACAGAGATCTGAGACAGGCCCCATGACAGCCTGGgaactgcacacacacagcactgcccTCTCTGGTCCTGGGTCCTGGGTTTGTCCTCCACCTGAAGTACTGGGTAAAGAAAGGAGGGGAGCGATGATTTTGAATAAATTATTCTGAAGACAGGACAGCCCCAGCAAACCATATAACCCTCTCTGGAGGTGGCCTCTTCCACCTCTTCTGCTAGACTGAGAAGGGACACCAGGATGTGTTATACTGACACTAAATGGTAGAACTGTACGATTCAATGGATACTGAATGGCCGGAGTGTGACTGATGGTGATTGTAAGCACTCTCTCTTGTGTGCAGGGAGACTGAAAGGTCTGTCCGTCACTGTGGCTCCCTTTATTGGGCCAGTTCCATTTTGACTCGTGTGTAAGAAATGTGTGTGATCACATGACGTGTGTTGTGAGTGTGCAGCATGTGTGTTCTTCTCTGTGTTGTATTGCGTTGTGTAGCCAAAGCACCTAGATGTCTGGAGGCAATCGCAGCCATGGCTGTGCAGTAGTTGGTATGCTCATTTACGAGTGAATGACTGAAGTCTTGACACATGGCAGTTGCCCCCTAAAGGTACCAGGCAAGCTGCTGCTGTACATTTCTGCTTCCTGTCACTGGTGTCCTAGATTAACAATCACTCTTGTAGCATTCAGTCCATGTCTGTCGTCCAAGTGTTAGTCATTCCAGACCCATGAaccagaaacatctcaagaaggAAGCAAATAGAGATATAATAATTGAAACTAAGtttatttttctttcaaaaataggAAAGGGATTATGGACTTTGTTGTTCTTGGGGTGTTTGCAGTGTCATGCCTGAGTTGGAAGAATCTGAGTGTCTTATTGTTTAGGGCTGTAATGGATGTAGTCATTGATGTGAAATAGTTGAAAGGCTGAGCAAggactgtactgtaatgtttaaATATAAGTCTTTGTTAGCGATTTCTGAGCCAAACAAGTGCTAACTGATGTCCACAAGATTGTGATGCAACCAACAAGAACAGTCCTTTGAGTGGAAGTACATTGAGTTCTTTAGAGAAGAAACAGGATATATCTTATTCCTTTAATTTATTAACAATGTTTTGCACTATTATTCACTTTATGAGGCTAAGCAACTACTTGAAGTCAAGTTTGTGTGTTTCCAAAGTCAGAAGCAAAACTGTGGCCGCATTCGAGTTTTTTTTTGTGTTCACTATACTTTCTCACAGGTACAACTGTCTAATGAAATATGTTTCAAAGTAAAGGTGCCATTTTTCTTTGAACACTGAAAACTGTTGCCTTCCGTCCATAACGTTCTTTTCCTGTAGTGTTTTAGCCGTAGGGAATATCCTTCTCAAAAATGTTTCGCTGCTTTCTGGAATGTGCGTTGGGATGTGCATTTGTGGTGTTGTTTCTTCTATCCCTCTTCATTTCTGCTGCTTGACAATcccttctgtgtgtgtttctgcagaTGTAACCTCTTCACCGTGACTTCCAGCACCTATGAATAGTGAAACACACGAGCAGCACTGACAAAATAGATTGAGTGGTGAATTAATGAAACGCTTGGGAGTTGTCTTACACACTTTTCAACGTCGTCATGTGCTTTAGATTTGAACACTTTCCACAACCCTGTTGGAATTTTGTATTGTGTCTTGATATTGTGCGTTGCTCTAGTTCTTCCCCGTCATGTTTCACATCATCATGACCTGTGAATGGTCCCCCTGCCATTTGTAAAGCCTGCTTGGTGTAAGTGGTTCAGGAAGCCTctgcattttttttattaaaagccATACTCCTTT

Function

NR:

description
syntaphilin-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021615978.2 False 4247 mRNA 0.53 6 48224647 48259337
XM_036988194.1 True 4211 mRNA 0.53 6 48236716 48259337

Neighbor

gene id symbol gene type direction distance location
ntsr1 LOC106572121 coding upstream 65683 48104332 ~ 48158964 (+)
LOC110532248 LOC106572122 coding upstream 201457 47986339 ~ 48023190 (+)
LOC110532243 mthfr coding upstream 530499 47679540 ~ 47694148 (+)
LOC110533018 LOC106572129 coding upstream 588234 47635370 ~ 47636413 (+)
LOC110533017 LOC106572130 coding upstream 596705 47626332 ~ 47627942 (+)
LOC110532257 LOC106572113 coding downstream 127430 48386767 ~ 48394099 (+)
LOC110532258 LOC106572114 coding downstream 141300 48400637 ~ 48404003 (+)
taf13 taf13 coding downstream 321906 48581243 ~ 48582509 (+)
LOC110531191 LOC106566483 coding downstream 356986 48616323 ~ 48617448 (+)
LOC118966185 NA coding downstream 359646 48618983 ~ 48620336 (+)
G812101 NA non-coding upstream 192529 48029315 ~ 48032118 (+)
G812103 NA non-coding upstream 196660 48027529 ~ 48027987 (+)
G812102 NA non-coding upstream 198468 48024222 ~ 48026179 (+)
G812127 NA non-coding upstream 263900 47960522 ~ 47960747 (+)
G812126 NA non-coding upstream 264428 47959996 ~ 47960219 (+)
G812382 NA non-coding downstream 18840 48278177 ~ 48286426 (+)
G812555 NA non-coding downstream 70259 48329596 ~ 48329827 (+)
G812613 NA non-coding downstream 166947 48426284 ~ 48435659 (+)
G812683 NA non-coding downstream 275234 48534571 ~ 48534871 (+)
G812684 LOC106572106 non-coding downstream 278690 48538027 ~ 48541698 (+)
G812143 NA other upstream 242346 47982001 ~ 47982301 (+)
G809685 NA other upstream 2088915 46134731 ~ 46135732 (+)
G807841 NA other upstream 3771570 44442662 ~ 44453077 (+)
G807677 NA other upstream 4028606 44195715 ~ 44196041 (+)
G805600 NA other upstream 5875861 42346176 ~ 42348786 (+)
G812688 LOC106572106 other downstream 286117 48545454 ~ 48570593 (+)
G813071 NA other downstream 700412 48959749 ~ 48959991 (+)
G813074 etbr2 other downstream 743982 48962187 ~ 49006710 (+)
G813139 NA other downstream 855800 49115137 ~ 49115618 (+)
G815428 NA other downstream 2536877 50796214 ~ 50800381 (+)

Expression


Co-expression Network