XLOC_002717 (ddhd2)


Basic Information

Item Value
gene id XLOC_002717
gene name ddhd2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 20503886 ~ 20524592 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005043
TGTAATTGtttgtatgttttacacaacgaaagcccttccagctGCATTGGCGTCTCTGCTCTTCTCAGTATGAATATTGTGGAGCCGTATGAGCCCATCCAGCACCACTGGTTCTTCAACCAGCAGGTGGACTCGAAAGACTCCTGGCAGCCCTTCAGCAGAGAAGATTCACAGCGGCTGGAGGAGGCGTACGCTCGAGGCAAATATGATAAGGATGAAGTGGTAGTGGCTACAGATGGACGAAGGTATGATGTTAAGCTACGTGAGCGCAAGCGTTACCCTGTATATTGGGAACAGAAGCCCACCGAGGTCAGACGCTGCTCCTGGTTCCACAAAGGCAACAAAGACATGAGCTACACTCCCTATACTGAAGATCTCAGCGAATTCCTTGAGgATGCCTACATGATCGCAGTTACACTGGATGAATGGAAGACAAATTTAGAGCTTCCAACAGGGGAAACTGTGATCCTTCACAATCCTAAGCTCATGACTCAGTACCCCAGCAGCTGCAAGGACTTTCCCCCTTCCCCGACTGAAAGAACTCAACCCAGGACACTGAAGAGAGGAGTGGAGAATATTTCAATAGAGATTCCAGAGGGAGAACCAGAGATAGTAGACCACCTAGTGTTCATGGTTCATGGCATCGGTCCGGCCTGTGATATACGTCTGCGTGGCATTGTCCAATGTGTGAATGAATTTCGAAACGCATCCAACAGCCTCATAACCAGCCATTTCAGGCCGAGTGGAGACTCCAGCATCATTGGACGGGTGGAGTACCTTCCAGTCAACTGGCACAAAGTTTTGCATGGAGAAACTACAGGAGTTGACAAAGACATCGAGAGAATCACTCTACCCAGCATTAGCCGTCTGCGTCAGTTCAGCAACGACACCGTGCTGGACCTTTTTTTCTACAATAGTGCGACGTACTGCCAGACTATTGTGGACACTGTGGCTTCTGAAATCAACCGTCTGCACAGCCTCTTCCTGCAGAGGCATCCGCAGTTCACTGGACACGTGTCCCTGTTTGGACACAGCCTTGGTATGTTGATTTTGTTTACTGATATAATGCTCCACAAGGACGCTCATGTTCACTCAGACTGTGGTTCTTATGAGAGCCTGGAGGTGGCGCTGAAAAGCCATGATTTGGAGGAGCACCTCAGTTTACTGCACAAAGAACAAGTGGATATGGAGTCTCTGATCCTCTGCTCAGAGAAGGACCTGAAAGATATCGGCATACCTCTTGGTCCTCGAAAGAAAATTTTGAACTaccagttcagctcAATGATGATAATgactccgacaccgcctgtagttccatttagcaacttgatagcaaacTTGTCAACTGACATTTTGTTTATTCTGCAGGTATCCATAGATTATCCTCAGTTGGCCTTTCATCCTCAGGCATTCTTTGCAGCCGGTTCACCCATAGGAATGTTTTTAACCGTTAGAGGTTTGAAGAGGATTGATCCCAACTACAGCTTGCCAACCTGCAAGAGTTTCTACAACATCTTCCACCCATTTGATCCTGTGGCGTATCGGATCGAGCCCATGATTGTGCCTCAAGACGTTGACTTACCTGCAATGTTGATCCCACATCATAAAGGCAGAAAGAGGATGCACCTcgAGCTCAAAGAAGGGTTGACTAGAGTCAGTTCTGATTTACTGGGCTCCTTACGTATGGTTTGGCAGAGCATTTCTCAGGTCCCAACACCAGCACTTGCTGAAGGTGGACTGAGCGCAATGACCCCCACAGATGAAGAGGACAGCAATGTCAAGGTGGGAATGTTGAATCGTGGGCGACGGATTGACTTTGTCCTTCAGGAGACGCCGATTGAAAGCTTCAACGAGTACTTGTTCGCCATTCAGAGCCATTTGTGCTACTGGGAGTCAGAAGACACTGCTCTGTTGGTCCTGAAAGagatttataaacattttcaagTGAGAAATGCTCAGTTATAA
>TCONS_00005044
TTGACTCATAATAACCGCCTCACCATATTGACCTGCAGCCGCTCTTGCAGCTCTAGTATCAAAATTCCCCATCATATGAATATTGTGGAGCCGTATGAGCCCATCCAGCACCACTGGTTCTTCAACCAGCAGGTGGACTCGAAAGACTCCTGGCAGCCCTTCAGCAGAGAAGATTCACAGCGGCTGGAGGAGGCGTACGCTCGAGGCAAATATGATAAGGATGAAGTGGTAGTGGCTACAGATGGACGAAGGTATGATGTTAAGCTACGTGAGCGCAAGCGTTACCCTGTATATTGGGAACAGAAGCCCACCGAGGTCAGACGCTGCTCCTGGTTCCACAAAGGCAACAAAGACATGAGCTACACTCCCTATACTGAAGATCTCAGCGAATTCCTTGAGgATGCCTACATGATCGCAGTTACACTGGATGAATGGAAGACAAATTTAGAGCTTCCAACAGGGGAAACTGTGATCCTTCACAATCCTAAGCTCATGACTCAGTACCCCAGCAGCTGCAAGGACTTTCCCCCTTCCCCGACTGAAAGAACTCAACCCAGGACACTGAAGAGAGGAGTGGAGAATATTTCAATAGAGATTCCAGAGGGAGAACCAGAGATAGTAGACCACCTAGTGTTCATGGTTCATGGCATCGGTCCGGCCTGTGATATACGTCTGCGTGGCATTGTCCAATGTGTGAATGAATTTCGAAACGCATCCAACAGCCTCATAACCAGCCATTTCAGGCCGAGTGGAGACTCCAGCATCATTGGACGGGTGGAGTACCTTCCAGTCAACTGGCACAAAGTTTTGCATGGAGAAACTACAGGAGTTGACAAAGACATCGAGAGAATCACTCTACCCAGCATTAGCCGTCTGCGTCAGTTCAGCAACGACACCGTGCTGGACCTTTTTTTCTACAATAGTGCGACGTACTGCCAGACTATTGTGGACACTGTGGCTTCTGAAATCAACCGTCTGCACAGCCTCTTCCTGCAGAGGCATCCGCAGTTCACTGGACACGTGTCCCTGTTTGGACACAGCCTTGGTATGTTGATTTTGTTTACTGATATAATGCTTCATCATTTTCATCAATTGAAATTGTTTCAGATCCTCTGCTCAGAGAAGGACCTGAAAGATATCGGCATACCTCTTGGTCCTCGAAAGAAAATTTTGAACTGTGTGAAGAAATGGAAGGTAATTCCTGAAATTTACTGTGTTTATAGACGCAGAAGTGGAAAAGGTTTGAAATGTGGCTTGACTTTGTCAACTGACATTTTGTTTATTCTGCAGGTATCCATAGATTATCCTCAGTTGGCCTTTCATCCTCAGGCATTCTTTGCAGCCGGTTCACCCATAGGAATGTTTTTAACCGTTAGAGGTTTGAAGAGGATTGATCCCAACTACAGCTTGCCAACCTGCAAGAGTTTCTACAACATCTTCCACCCATTTGATCCTGTGGCGTATCGGATCGAGCCCATGATTGTGCCTCAAGACGTTGACTTACCTGCAATGTTGATCCCACATCATAAAGGCAGAAAGAGGATGCACCTcgAGCTCAAAGAAGGGTTGACTAGAGTCAGTTCTGATTTACTGGGCTCCTTACGTATGGTTTGGCAGAGCATTTCTCAGGTCCCAACACCAGCACTTGCTGAAGGTGGACTGAGCGCAATGACCCCCACAGATGAAGAGGACAGCAATGTCAAGGTGGGAATGTTGAATCGTGGGCGACGGATTGACTTTGTCCTTCAGGAGACGCCGATTGAAAGCTTCAACGAGTACTTGTTCGCCATTCAGAGCCATTTGTGCTACTGGGAGTCAGAAGACACTGCTCTGTTGGTCCTGAAAGagatttataaacattttcaagTGAGAAATGCTCAGTTATAA
>TCONS_00005045
CGAGCTTCCGTACGAGCAGCCGTCCATAGGCATTGGCGTCTCTGCTCTTCTCAGTATGAATATTGTGGAGCCGTATGAGCCCATCCAGCACCACTGGTTCTTCAACCAGCAGGTGGACTCGAAAGACTCCTGGCAGCCCTTCAGCAGAGAAGATTCACAGCGGCTGGAGGAGGCGTACGCTCGAGGCAAATATGATAAGGATGAAGTGGTAGTGGCTACAGATGGACGAAGGTATGATGTTAAGCTACGTGAGCGCAAGCGTTACCCTGTATATTGGGAACAGAAGCCCACCGAGGTCAGACGCTGCTCCTGGTTCCACAAAGGCAACAAAGACATGAGCTACACTCCCTATACTGAAGATCTCAGCGAATTCCTTGAGgATGCCTACATGATCGCAGTTACACTGGATGAATGGAAGACAAATTTAGAGCTTCCAACAGGGGAAACTGTGATCCTTCACAATCCTAAGCTCATGACTCAGTACCCCAGCAGCTGCAAGGACTTTCCCCCTTCCCCGACTGAAAGAACTCAACCCAGGACACTGAAGAGAGGAGTGGAGAATATTTCAATAGAGATTCCAGAGGGAGAACCAGAGATAGTAGACCACCTAGTGTTCATGGTTCATGGCATCGGTCCGGCCTGTGATATACGTCTGCGTGGCATTGTCCAATGTGTGAATGAATTTCGAAACGCATCCAACAGCCTCATAACCAGCCATTTCAGGCCGAGTGGAGACTCCAGCATCATTGGACGGGTGGAGTACCTTCCAGTCAACTGGCACAAAGTTTTGCATGGAGAAACTACAGGAGTTGACAAAGACATCGAGAGAATCACTCTACCCAGCATTAGCCGTCTGCGTCAGTTCAGCAACGACACCGTGCTGGACCTTTTTTTCTACAATAGTGCGACGTACTGCCAGACTATTGTGGACACTGTGGCTTCTGAAATCAACCGTCTGCACAGCCTCTTCCTGCAGAGGCATCCGCAGTTCACTGGACACGTGTCCCTGTTTGGACACAGCCTTGGATCATTGATCCTGTTTGATCTCCTCACCAATCAAGAAACCAGTGCAGATGTCACAGATCATGAGGTTTGCACCACTTTTTT

Function

symbol description
ddhd2 Predicted to enable phospholipase activity and triglyceride lipase activity. Predicted to be active in COPII-coated ER to Golgi transport vesicle. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 54. Orthologous to human DDHD2 (DDHD domain containing 2).

GO:

id name namespace
GO:0030134 COPII-coated ER to Golgi transport vesicle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004806 triglyceride lipase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004620 phospholipase activity molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-080519-4 Predicted to enable phospholipase activity and triglyceride lipase activity. Predicted to be active in COPII-coated ER to Golgi transport vesicle. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 54. Orthologous to human DDHD2 (DDHD domain containing 2).

Ensembl:

ensembl_id ENSDARG00000076765

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005043 False 1965 mRNA 0.48 16 20503886 20523405
TCONS_00005044 False 1887 mRNA 0.47 14 20503886 20524592
TCONS_00005045 True 1107 mRNA 0.50 9 20515436 20524387

Neighbor

gene id symbol gene type direction distance location
XLOC_002716 BX294119.1 coding downstream 19956 20483814 ~ 20483930 (-)
XLOC_002715 tacc1 coding downstream 22123 20460551 ~ 20481763 (-)
XLOC_002714 NA coding downstream 47879 20448639 ~ 20456007 (-)
XLOC_002713 loxl2a coding downstream 58337 20407888 ~ 20445549 (-)
XLOC_002712 sfrp1b coding downstream 146873 20351413 ~ 20357013 (-)
XLOC_002718 plpp5 coding upstream 2835 20527427 ~ 20537062 (-)
XLOC_002719 nsd3 coding upstream 18687 20543279 ~ 20588889 (-)
XLOC_002720 NA coding upstream 92184 20616776 ~ 20618813 (-)
XLOC_002721 sprn2 coding upstream 111368 20635960 ~ 20637098 (-)
XLOC_002722 rassf2b coding upstream 116409 20641001 ~ 20650302 (-)
XLOC_002710 NA non-coding downstream 266915 20234014 ~ 20236971 (-)
XLOC_002708 CR450836.1 non-coding downstream 352558 20143797 ~ 20151328 (-)
XLOC_002705 NA non-coding downstream 507155 19931298 ~ 19996731 (-)
XLOC_002724 NA non-coding upstream 318326 20842918 ~ 20888760 (-)
XLOC_002725 BX004800.2 non-coding upstream 383850 20908442 ~ 20908556 (-)
XLOC_002730 BX957322.2 non-coding upstream 1045604 21570196 ~ 21573457 (-)
XLOC_002731 NA non-coding upstream 1103215 21627807 ~ 21649728 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_08819813_08827793 DDHD2 coding CI01000304 null 8818948 ~ 8827793 (-)