G837966


Basic Information

Item Value
gene id G837966
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 71907006 ~ 71908352 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU953271
TATTTAGTATTTAGAGTTTATTGCTGATATCGAATAGATACAACAGTCACAAGAGAAGTATAAATCCTCTACTTGATCAAAAAAGGACATGGAAGCAGAAATAGTCTAAGGCGAACATATGAAGTGTACCTTATCACACGTTGACACATAACTTATTTAACAATGAACAGAAGCAGATAAAACCTGATTATATATAGTAGGTCACTGTAGGCCAACAGACCTCTTCTAGAACTTGAAAATAACCTCAAATCTAAAATCTTGGAATTTTTCAAATATATTACCTCTTATCAAATTAGTTGAACTGAATGTTGAAGGTCACCTGATAAGCAAATGGCTCAGAAGGCATATTCACACATCAAGGCCTTGTTTCAGTTATGAAACACTTGTCAAATACTGTATTAGACATTAAAAAAAAAGAGCTCACAACACCAATTCTGGCTCATGGAATGTACTTTATTTAAGATGTCAGTGCgctgacaatgtgtgtgtgtgtgtggaaacatatccctctcattctcctctctaaCTGTACGGCCAATAACTTGGCGCCACCATATGACTTTCAGGAGCAGATAAAACTACAGCACATTGACAATTAACCATGAATAAAcgtcagtggtggctggtgggaggagctataagagGGCGGGATCATTGTAATGACAGGAATGGAATTAATGGGACGGAGTCTAATGTGAttaccatatgtttgatgtgttttatACCGTTACATGTATTCCGTTCCAACCATTACAATAAGCccctcctcctatagctcctcccaccagccgccACTAATAAACATTGTGATTTAGCAACAATTAGCATTAGCAACAATTAATTAATCATTTTTTAAGATAAAATCATGCAAACAGAGTATTTTAAAATATAtgactgacatttttttttgtttatggtTACTTCTCTTGGagtacgtcccaaatggaacctttTACTCTagttggtgcactacttttgaccctggcctatagggctctggtctaaagaagtgcactatataaggaatagggtgccatttggaacatacaTATTGGTTTCTGCTCTTGTTTCATATGATTGAAATGCATGAATTGATTAATATACCTAACAGACAAGTTAGatattatgttattattattatgcccGACAGTgttaataatacattttagattcgGCATAAAAGCAAAATAATTATTCTTCCCTTTTGTaacaatttagaaaataaaatAGAGAATTaatcttgtttttttttctctccctcagaTGTTGGTTGCAGGTCACCGCATTGTCCATTCCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU953271 True 1298 lncRNA 0.35 2 71907006 71908352

Neighbor

gene id symbol gene type direction distance location
LOC118965943 NA coding upstream 125067 71780791 ~ 71781939 (+)
LOC110531270 LOC106566388 coding upstream 142380 71703769 ~ 71764626 (+)
slc16a4 LOC106572850 coding upstream 356713 71467717 ~ 71550293 (+)
lamtor5 xip coding upstream 440976 71462207 ~ 71466030 (+)
LOC110532798 LOC106572853 coding upstream 484754 71415728 ~ 71422252 (+)
LOC118966113 NA coding downstream 27473 71934902 ~ 71937004 (+)
LOC118936690 NA coding downstream 71975 71980327 ~ 71982749 (+)
LOC110532806 LOC106572864 coding downstream 135017 72043369 ~ 72050988 (+)
LOC110531273 LOC106572863 coding downstream 172577 72080929 ~ 72087928 (+)
LOC110532807 LOC106572862 coding downstream 200280 72108325 ~ 72121954 (+)
G837992 NA non-coding upstream 12926 71893815 ~ 71894080 (+)
G837985 NA non-coding upstream 23032 71883489 ~ 71883974 (+)
G837981 NA non-coding upstream 26389 71880238 ~ 71880617 (+)
G837978 NA non-coding upstream 41112 71862847 ~ 71865894 (+)
G837973 LOC106572844 non-coding upstream 54870 71851339 ~ 71852136 (+)
G838005 NA non-coding downstream 11235 71919587 ~ 71920064 (+)
G838013 NA non-coding downstream 19275 71927627 ~ 71928311 (+)
G837989 NA non-coding downstream 62898 71971250 ~ 71972137 (+)
G838008 NA non-coding downstream 74440 71982792 ~ 71986855 (+)
G838039 NA non-coding downstream 80067 71988419 ~ 71989664 (+)
G837970 LOC106572844 other upstream 58969 71847654 ~ 71848037 (+)
G837570 NA other upstream 267247 71627848 ~ 71639759 (+)
znf335 LOC106572852 other upstream 522543 71376417 ~ 71415664 (+)
G837369 NA other upstream 673582 71232786 ~ 71233424 (+)
LOC110532808 LOC105013496 other downstream 235877 72144060 ~ 72206183 (+)
G838276 NA other downstream 328901 72237253 ~ 72238249 (+)
rerea LOC107737560 other downstream 807956 72716129 ~ 73026771 (+)
G838757 NA other downstream 1294025 73202377 ~ 73203159 (+)

Expression


Co-expression Network