G873784 (LOC106573797)


Basic Information

Item Value
gene id G873784
gene name LOC106573797
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 27582929 ~ 27584262 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU994733
cttatagatgggaggcaattaaggtcatagtTACGAAAACttaggcctctttagtgtcctttctactgactctgaaaaacaccaaaagaaagatgcccagggtccctgcttatctgcgtgagcgtgccttaggcatgctgcaaggaggcatgagggctgcagatgtggccagggcaataaattgcaatgtccgtactgtgagacgccaaagacagcgctacagggagattGTACGGACAGCTGAcagtcctcgcagtggcagaccacgtataacaacacctgcataggatcggtacatccgaacatcacacctgcaggacagttgttgttgccatcctgtacctgtccgagttacaccaggaacacacatcCCTCCGTCAGTGCTCAGAGACTGTCCGCactaggctgagagaggctggactgagggcttgtaggcccgttgtaaggcaggtcctcaccagacatcaccggcaacaacgttgcctatgggcacaaacccgtCGCTGGACcatacaggactggcaaaaagtgctctttttgtcttcactgacgagtcacggttttgtctcaccaggggtgatggtcggattcgcgttcatcgtcgaaggaatgagagttacaccaaggcctgtacgctggagcaggatcgatttggaggtggagggtccatcatggtctggggcggtgtgtcacagcatcatcaaactgaacttgttgtcattgcaggcaatctcaacactgcgttacagggaagacatcctcctctgtcatgtggtacccttcctgcaggctcatcctgacatgagaatgccaccagccatactactcgttctgtgcatgatttcctacaagacaggaaaGCCAGTGTTCAGTgtcctgccatggccagcaaagagcccgggatctcaatcccattgagcacgtctgggacctgttggatcagagggtgagggctagggaccagtggaagcaaaatagccccataacatcaaaggtCCACCACCatatttacagtaggtatggggttcttttcAGCTTATGTGTCCTTATTTCTAcgtcaaacccaccactggtttgCAGGGCCAAAGGGctgccaaagagctctattttcatatCATACAACAAATGTAAACGCCTGGAGTTCTCTAAACAGCATTGGTacttggattggaaccagtgCTATGGTCAGATTACAGAAAAATAGAGCTTGTTGGCCAcgtacaatatagctcagtatttgaattatttattttacacagacttttttgctcatctttatcaggAGTGTCAATTTCGGGCACCACTGGTATATAATTTTTACTAAAGTGTTAATT

Function

NR:

description
Transposable element Tc1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU994733 True 1334 TUCP 0.49 1 27582929 27584262

Neighbor

gene id symbol gene type direction distance location
kctd7 LOC106603469 coding downstream 4629 27574627 ~ 27578300 (-)
LOC110533586 rabgef1 coding downstream 19996 27544054 ~ 27563122 (-)
LOC110534878 trim37 coding downstream 43280 27499594 ~ 27539649 (-)
LOC110533580 tex14 coding downstream 216373 27330589 ~ 27366556 (-)
LOC110533583 LOC100196673 coding downstream 271107 27305871 ~ 27311822 (-)
LOC118936908 LOC106567662 coding upstream 5511 27589773 ~ 27592690 (-)
LOC110533589 LOC106603469 coding upstream 39790 27624052 ~ 27633778 (-)
cux1a LOC106603419 coding upstream 72800 27657062 ~ 27870154 (-)
LOC110533591 LOC106603471 coding upstream 305226 27889488 ~ 27969015 (-)
LOC110534912 LOC106603420 coding upstream 396471 27980733 ~ 27982670 (-)
G873783 NA non-coding downstream 892 27581553 ~ 27582037 (-)
G873778 NA non-coding downstream 1435 27581089 ~ 27581494 (-)
G873781 NA non-coding downstream 3303 27579102 ~ 27579626 (-)
G873775 NA non-coding downstream 11995 27570631 ~ 27570934 (-)
G873437 NA non-coding downstream 15542 27567098 ~ 27567387 (-)
G873812 NA non-coding upstream 26334 27610596 ~ 27610835 (-)
G873813 LOC100380853 non-coding upstream 26753 27611015 ~ 27611667 (-)
G873815 NA non-coding upstream 30400 27614662 ~ 27614869 (-)
G873817 NA non-coding upstream 32254 27616516 ~ 27616716 (-)
G873209 orai2 other downstream 418379 27162900 ~ 27164550 (-)
LOC110533569 LOC106567674 other downstream 671303 26890009 ~ 26911668 (-)
G866654 NA other downstream 5759308 21819111 ~ 21823621 (-)
G865988 LOC106578276 other downstream 5823077 21759124 ~ 21759852 (-)
G874706 NA other upstream 955967 28540229 ~ 28543267 (-)
G875194 NA other upstream 1356978 28941240 ~ 28985070 (-)
LOC110533621 NA other upstream 2331105 29906094 ~ 29922728 (-)
G878962 NA other upstream 3863220 31447482 ~ 31449163 (-)
G879440 LOC106603524 other upstream 4641170 32225432 ~ 32225936 (-)

Expression


Co-expression Network