XLOC_028375 (CU855889.2)


Basic Information

Item Value
gene id XLOC_028375
gene name CU855889.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 701612 ~ 734347 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055112
gcAGAGTCACGTGATCAGACACGCAGCAGGTCGCGCGTGCGCAGTACTGGAACGACAGGTCAAGCAGTGGGAGAGCGATGTGTACATCCCAGAAGACGTAAATGGCAGCAAATCTACTGGAGCAGTCCCGGGGATATGGCCAGGCAGCCCAGAAGACATGGAGATGTGTTGAGGGGACCGAGGGCTTTGAGTGGAGCCGGATGCTCGTGAGATGAATGGACAGTTGTATTGTTTGTGCATGTGCGAAGGGAGGAGCTGAGTTCCAGGGCCAATGAGAAGCGAGCGAGGATTGTGGGAAGGAGCCGTCCTATTGGTCAGGATCGTCCGTGCAGCTGCTGCGTAATCAGGAGAGCAGTACTTAAGAGGCATTAGTGCTGGAGCGGCAGCGAAAGCGGCAGCCCTGCGGTGGCAGCCGAGCGGTGTTCATCCCTTGCGGTGTGAAGACCGGCGGGGTAAAGACAAGGCGCGACTCTGCGCGACTCTAACTGCGCGACTCCAACGAGCAGAGGACAACGGCAGAGgATGCATTTAAAGATTGTGCAGCACCACTGATGTGATCCAAAAGCTGTGAAGACATGATGCCAAACATCAACCACCTCAACCACAACACATACAAAGACGTCATGCCAGCCATCTAACACTTGCACAGAAGCCCATCTCGACGCCTCTACAGACTGTGCAACACCATTGATAAGATCCCAGACCTGtcaagagatgatgccaaccatggAACCATCCACACCTTCCTGGAGAAACACAAACCTGTGCTGCAACACTGACCACTGCATGCACTGACAACTTCAACCATCACCACATCACATTACAgttcttgcatttactaacatgaaggaCGAAAAGTACActacagtatttcttcatttgttagtgcaataaataatgttaacaagcatgcattTGGATGTTCATATTGTAAATGTTCGTTATTAAATGTAATACAAGTATTGTTTATAAttacttcatgttagtaaatacaataactaatgacaccttattgtaaagtatgacATCATCACCAAGCAATCAAAAAAATACACCCTGTTTGTATTGTCAGAATAaagattttacaataataaagatTTGTTTTTGGGGTAAATGATCATTACAATTATTACAAGTATAAtatgaatacattaataaatatgaaGACATCTAAAGTA

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0001706 endoderm formation biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0002030 inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:1904323 regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:1904325 positive regulation of inhibitory G protein-coupled receptor phosphorylation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0051281 positive regulation of release of sequestered calcium ion into cytosol biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0010524 positive regulation of calcium ion transport into cytosol biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:1903587 regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:1903589 positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0000785 chromatin cellular_component
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0060182 apelin receptor activity molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000103870

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055112 True 1178 lncRNA 0.46 6 701612 734347

Neighbor

gene id symbol gene type direction distance location
XLOC_028374 rtcb coding downstream 16179 676710 ~ 685433 (-)
XLOC_028373 NA coding downstream 304793 393551 ~ 396819 (-)
XLOC_028372 dynlt1 coding downstream 311170 386435 ~ 390442 (-)
XLOC_028371 mrps10 coding downstream 370864 325028 ~ 330748 (-)
XLOC_028370 echdc3 coding downstream 414187 286425 ~ 287425 (-)
XLOC_028377 agbl5 coding upstream 3192 737539 ~ 760560 (-)
XLOC_028378 tmem214 coding upstream 29753 764100 ~ 779796 (-)
XLOC_028379 mapre3b coding upstream 49297 783644 ~ 797858 (-)
XLOC_028380 dpysl5b coding upstream 64349 798696 ~ 815871 (-)
XLOC_028381 sobpb coding upstream 84581 818928 ~ 858434 (-)
XLOC_028362 NA non-coding downstream 582418 116322 ~ 119194 (-)
XLOC_028360 NA non-coding downstream 600235 99991 ~ 101377 (-)
XLOC_028359 NA non-coding downstream 627004 73430 ~ 74608 (-)
XLOC_028358 NA non-coding downstream 628954 71463 ~ 72658 (-)
XLOC_028383 NA non-coding upstream 165615 899962 ~ 904022 (-)
XLOC_028385 NA non-coding upstream 185405 919752 ~ 921761 (-)
XLOC_028389 NA non-coding upstream 276613 1010960 ~ 1013095 (-)
XLOC_028391 NA non-coding upstream 287969 1022316 ~ 1023700 (-)
XLOC_028392 NA non-coding upstream 294489 1028836 ~ 1036046 (-)

Expression


Co-expression Network