XLOC_028383


Basic Information

Item Value
gene id XLOC_028383
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 899962 ~ 904022 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057976
TActccatgaaggattaaggctgtTCTGACGGCAAAAGGGTTCCAACCCGCAGGAGGCGCTTCAGAGACACTGCTGATCCTCCCACAGCAAAAACAGGATGGTAAACTAAAGATTTCAGCCCTCTCTGGCATCTGGATTATATTTGAGTGTGTGGTTTCAGTGAGTCATGCGGAAACACTGCGCTTTCACCTCTCTCACACTCGCTGTATGAGACACCAACTCAACATCATCTCTACTGTTAGCTAGACGACACACAGCACAGTGACGTTACAGTGAATGTGAAGATGCTCCAGTTCCTGTCGTTAGATGTGATCAGGTCTCATTACACCACTGGAGCATTGGAGATTCTGCTCAAATTACCTGTCAAGTCATAAGTTGTGAaaaatggaaaatatattttgacaaacattcttctttctttctttcgttctgtTCTGtcttttatctatccatccatccgtcattcTTTCTATCTCTATTCATCCATTTGTCCGTCCGTCCAActatcaaccatccatccatccattgatctgtctgtctgtctgtttgtctgtctgtctgtctgtctgtttatctgtctattTGTGTCGATCTATCCATATCACCgtcattctatctatccatccgtcattccatccatccattcgttgttctatctgtttgtttgtctgtctgtctgtctattaatctttatctatctatctgtgtgtctgttgatccatctgtccatccatccatctatacgtccatctgtctgtcttgtTTGAATATGTTTATTGGCAATATACATAACGTCAAGAAAGCAAACGTGCAATAAATATCAGAACATTCCATTTTAGCAATTAGCAAGAAGCTATTTATTAATGTGTTCAGCTACAATAAAGAAATGCATTTCAGAAGAAAGAATATAAGAATAAGAAAGAAATCCACCTTCCTgcat
>TCONS_00057977
tctctgaggaatatttccagttgcTTGTTAAATCTActccatgaaggattaaggctgtTCTGACGGCAAAAGGGTTCCAACCCGCAGGAGGCGCTTCAGAGACACTGCTGATCCTCCCACAGCAAAAACAGGATGGATTTCAGCCCTCTCTGGCATCTGGATTATATTTGAGTGTGTGGTTTCAGTGAGTCATGCGGAAACACTGCGCTTTCACCTCTCTCACACTCGCTGTATGAGACACCAACTCAACATCATCTCTACTGTTAGCTAGACGACACACAGCACAGTGACGTTACAGTGAATGTGAAGATGCTCCAGTTCCTGTCGTTAGATGTGATCAGGTCTCATTACACCACTGGAGCATTGGAGATTCTGCTCAAATTACCTGTCAAGTCATAAGTTGTGAaaaatggaaaatatattttgacaaacattcttctttctttctttcgttctgtTCTGtcttttatctatccatccatccgtcattcTTTCTATCTCTATTCATCCATTTGTCCGTCCGTCCAActatcaaccatccatccatccattgatctgtctgtctgtctgtttgtctgtctgtctgtctgtctgtttatctgtctattTGTGTCGATCTATCCATATCACCgtcattctatctatccatccgtcattccatccatccattcgttgttctatctgtttgtttgtctgtctgtctgtctattaatctttatctatctatctgtgtgtctgttgatccatctgtccatccatccatctatacgtccatctgtctgtcttgtTTGAATATGTTTATTGGCAATATACATAACGTCAAGAAAGCAAACGTGCAATAAATATCAGAACATTCCATTTTAGCAATTAGCAAGAAGCTATTTATTAATGTGTTCAGCTACAATAAAGAAATGCATTTCAGAAGAAAGAATATAAGAATAAGAAAGAAATCCACCTTCCTgcat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057976 False 941 lncRNA 0.40 3 899962 903988
TCONS_00057977 True 965 lncRNA 0.40 3 899962 904022

Neighbor

gene id symbol gene type direction distance location
XLOC_028382 crybg1b coding downstream 9742 861444 ~ 890220 (-)
XLOC_028381 sobpb coding downstream 41528 818928 ~ 858434 (-)
XLOC_028380 dpysl5b coding downstream 84091 798696 ~ 815871 (-)
XLOC_028379 mapre3b coding downstream 102104 783644 ~ 797858 (-)
XLOC_028378 tmem214 coding downstream 120166 764100 ~ 779796 (-)
XLOC_028384 mrap2b coding upstream 1461 905483 ~ 908821 (-)
XLOC_028385 NA coding upstream 15730 919752 ~ 921761 (-)
XLOC_028386 sim1b coding upstream 25535 929557 ~ 948842 (-)
XLOC_028387 atp23 coding upstream 54029 958051 ~ 965267 (-)
XLOC_028388 naga coding upstream 78006 982028 ~ 992148 (-)
XLOC_028375 CU855889.2 non-coding downstream 165615 701612 ~ 734347 (-)
XLOC_028376 NA non-coding downstream 167478 723830 ~ 732484 (-)
XLOC_028373 NA non-coding downstream 503143 393551 ~ 396819 (-)
XLOC_028362 NA non-coding downstream 780768 116322 ~ 119194 (-)
XLOC_028360 NA non-coding downstream 798585 99991 ~ 101377 (-)
XLOC_028389 NA non-coding upstream 106938 1010960 ~ 1013095 (-)
XLOC_028391 NA non-coding upstream 118294 1022316 ~ 1023700 (-)
XLOC_028392 NA non-coding upstream 124814 1028836 ~ 1036046 (-)
XLOC_028393 NA non-coding upstream 150639 1054661 ~ 1259741 (-)

Expression


Co-expression Network