XLOC_028387 (atp23)


Basic Information

Item Value
gene id XLOC_028387
gene name atp23
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 958051 ~ 965267 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055132
ATGGCTCAAAGTGGAGCAAAAGCCGCAGATCTCAGCAGAGAACCACCCGGAGAGCAGAAACCTTCACCGTCCAGCCGACAGAATGAAGAGGACCTCGGCTATAATTTATACCCGGAGAGAGGCAGCAGGCTCAAGAAGAGCACGGTCGAAGAGAGTCTGTTCACCTTTAAACACAAGTGTCAACTCATGCTGCAGTTCGCCATGGACACTAGTCCTTATGCTAAACTTCTGCTGGGGGCCATGAAGAGCTCTGGCTGCACAGTTTTTAAAGACAGACACTTCTCCTGCGAGGACTGTGATGGGACGGTCAGTGGCGGGTTTGATGCTGCTACCTCTCAGATTGTTTTATGCCAGAACAACATTCACCAGCAGGCTCATATGAACCGTGTGGTCACTCATGAGCTGATCCACGCCTTTGACCACTGCAGAGCTCAAGTCGACTGGTTTAGCAACTACAGACATCTGGCCTGTTCAGAGATCCGGGCGGCTAATCTGAGCGGAGACTGTTCCTTCATTAACGAGTTCTCCAGGTTTAACTTCGGCCTCAGAAAACATCATCAGGAGTGTGTGCGTGGCCGAGCACTGCGCTCTATCTTGGCGGTGCGGCGGGTCAGCAGGGAGGAGGCGGAGCGAGTGGTTGACGAGGTGTTTGACAGCTGCTTTAATGACCACGCCCCCTTCGGCCGCATCCCGCACAGCAAGAAAGACGCCAAGTTTGCCCATAGAGACTTCGAGAACCGGGACCGCTATTACGCAAACCTCTGACCACACACATACCTGACCAACTCCAGCCTGATCATCCGTGATATCAAGCTGAACTATGAGCACATTCTTGCCTTTTTTAATCAGAGTCTAGCCTGAGGAAACGCTGAGGATCTGTTGGAAAGGGACTGAGCTATTTATTGGACATGTGTAACGTCAGATCTATCTTTGTATATcagcagattattattatttttgcaaacaTTCACCATTCACTCGAGTTTCTGTACTGATCTGAGAGAAGCGACACACATGAGactgaaaaacaaattaaaataagaaatcaACTTTGTTCTCTGAGGGTTTTCTTCTGGCTGTTACGTCAGATCTCCACATGGTGGCGCTGTAGCTGTTTTAATGAAGCAGAAAAGCCtcgtgttgttgttttttagcaGCAAAATTGATAACTTGCTGTTCTTATTGCAAATAGTGAAGTATAAGTTCCTTTATATGTTTGTTTAGGAGATCTGCGGCTCACAGGTAAAAGGTTGTGGGTTCAGATCCCTTTAGGTTATTGTGATGTTAAAGATTTGGGTTTGAATCTCAGCTCTCTTATTGTAAAACCTCAGGTGAATAGTGAAGTACAAGTTACTTCATATGTTTCTATAGGATAAAAGGTTGTGGGTTTGAATCCCTTCAGATTACTGTTATGTTAAAGGATTGGGTTTAAATCTCAGCTCTCTTATTGTAAAACCTCATGTTTCACAGGTAAGTGATGAGGTTTCTTTGTGTTTCTAAACAGATCTTACATGAGGTTGCATGTTTGAGTCCCTCCAGGTCTCTTTGATCAGAAGATCTTGGGTTTGAACCCCACCTAAGCTGTCTTATTGTGAAATCACAGGTGTATAGTGAAGTATAAATTGCTTCAAACGTTTCTGCAAGACGTCTGAGGCTCACGTGTTTCTTCATGTGTTTCTAAACAGATCTTACATGTAAGAGGTTGTGGGGTTGAGTCCCTTTAGATTACTGTGATGATGAAGACTTCAGTTTAAACGTCAGCACTTATTTAAGTGCCCCAAGAAAACAGTGTTGTATATGTTATTTCGTGACTTTAGGC

Function

symbol description
atp23 Predicted to enable metal ion binding activity and metalloendopeptidase activity. Predicted to be involved in mitochondrial protein processing and mitochondrial proton-transporting ATP synthase complex assembly. Predicted to act upstream of or within proteolysis. Predicted to be extrinsic component of mitochondrial inner membrane. Orthologous to human ATP23 (ATP23 metallopeptidase and ATP synthase assembly factor homolog).

GO:

id name namespace
GO:0034982 mitochondrial protein processing biological_process
GO:0006508 proteolysis biological_process
GO:0033615 mitochondrial proton-transporting ATP synthase complex assembly biological_process
GO:0031314 extrinsic component of mitochondrial inner membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-070410-102 Predicted to enable metal ion binding activity and metalloendopeptidase activity. Predicted to be involved in mitochondrial protein processing and mitochondrial proton-transporting ATP synthase complex assembly. Predicted to act upstream of or within proteolysis. Predicted to be extrinsic component of mitochondrial inner membrane. Orthologous to human ATP23 (ATP23 metallopeptidase and ATP synthase assembly factor homolog).

Ensembl:

ensembl_id ENSDARG00000063686

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055132 True 1819 mRNA 0.45 6 958051 965267

Neighbor

gene id symbol gene type direction distance location
XLOC_028386 sim1b coding downstream 9209 929557 ~ 948842 (-)
XLOC_028385 NA coding downstream 36290 919752 ~ 921761 (-)
XLOC_028384 mrap2b coding downstream 49230 905483 ~ 908821 (-)
XLOC_028383 NA coding downstream 54029 899962 ~ 904022 (-)
XLOC_028382 crybg1b coding downstream 67831 861444 ~ 890220 (-)
XLOC_028388 naga coding upstream 16761 982028 ~ 992148 (-)
XLOC_028389 NA coding upstream 45693 1010960 ~ 1013095 (-)
XLOC_028390 NA coding upstream 49281 1014548 ~ 1015896 (-)
XLOC_028391 NA coding upstream 57049 1022316 ~ 1023700 (-)
XLOC_028392 NA coding upstream 63569 1028836 ~ 1036046 (-)
XLOC_028375 CU855889.2 non-coding downstream 223704 701612 ~ 734347 (-)
XLOC_028376 NA non-coding downstream 225567 723830 ~ 732484 (-)
XLOC_028373 NA non-coding downstream 561232 393551 ~ 396819 (-)
XLOC_028393 NA non-coding upstream 89394 1054661 ~ 1259741 (-)
XLOC_028394 NA non-coding upstream 257897 1223164 ~ 1234236 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000068_00837068_00839061 ATP23, XRCC6BP1 coding CI01000068 null 837068 ~ 839607 (+)