XLOC_028395 (ptn)


Basic Information

Item Value
gene id XLOC_028395
gene name ptn
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1301436 ~ 1360495 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055138
aatccctccctccacacacacacacatacacatatgcatTCAGTCTGTCGCTCTCACAGATACCATTAGCACGGCTCTAGTGGATATAGAAAGCTAGGGATAAAAAGAGAGAGGAAGCAAAAAGGTGGAATTAGGAACAAAAACCAAACTATTCCTCAGACTACAGCATGCAGCAGCAGTGGGTGTGTGTGgctttattagccctcctgactGTCACAGCGACACTTGCAGATGGTgggaaaacagaaaaacaagGTAAGAAAGAGCGTAAATCGGACTGTGGAGAGTGgcagtggagtgtgtgtgtggccaATGAGGGCGACTGCGGATTGGGAACCAGAGAGGGCACACGCTCCGGCAATGACtgcaaacagaccatcaaaaccCAGCGCTGCAAAATCCCATGCAACTGGAAGAAGCAGTTTGGAGGTGAGTGTAAGTATGATTTCCAGGCATGGGGAGAGTGTGATTCGACCACAGGAATGAAGACTCGCACTGGAGTGCTAAAGCGAGCGCTGATGGATGCTAACTGTCCAAACACAGTCAGCGCCACCAAACCCTGTGGCAAACCCAAGACCAAGATGCAAGACTCTCAGAAACCAAAACGGGACGGAAAGAAGAAGGAGCGAAACCCTACAGACTAGAGGAGGAAAACTCCTGAAGCGTCTCCTTCTGCCTCCTGAAGACGCTTCCTATTCCTCATGCTATATTTTTAGATCTTTTGTAGCGTTCACTTACAGCTCACCCAGTACTAaataagagagaaagagaaacaaaATGAGTCCACTAAAATCTTCAACACAAAAATCTGAGATGACAGAAAGCACAACTGAAAGAGTGTTTTATTGCAttgatgagtgtgtgtttaatTGGCCTCATCAAATAGTGTCTTCGACTAGAGTGTGAAGCAGAACTTACTGAGTTTTACATTAGTAGGGAATTATTACTGTTTTAATGCAGCATTTGGTCATTGATTTATGCAGCACTGATTATTAACATCATCTGATGCTTCTCAAACATCCCTGCATATTTAACAGTGAAATAAAACAAGTGTACTATTGAAGACAcagttctttttcaaatatttcacaagtgctgattaacagagcaagggcacTTTTCCAActtgggctcattctgaaaatgtacccctgtatacatttctggagatcacgaaatacgtcccaggagctacgttttttgcacactttttttagatctcaaatttctctcgcaagtgtcgtttgcgcctgctgttctcgtgtaaatccaccagaggctgctgttgactgactgactgacttcccttaacccaatcgacagtgtttccaaaagcagtccagaaaaagtaAATCCTTCGTCTGATTTttatcacgttttcagattttaccacattttcaccctgttatttatttgtttattttattttttagcttttatttttgtcttacctgctttctggaattgttcttcgccagacttgaaccctgtcatcatggtcaactcctttctgtgtctcaagtccaccaatgtaCATGGAGagtcactggacaaactggtaacagctgaaaAGCCATCCCCACAGAGGTAAGCGGCCAGCTgataagcgtgaaaaggaacaacatcacactgccccgtagcgttcgttttaaatatgaaatgcaagcttacgtacttctggctacgtaatttgcaatctccataaATGTAAACAGCGGTACATTTATAGAATAAacctgttgcattttttttttcagtgttcatttttctttggcttagccTCTATTTtagtcaccacagtagaatgaactgccaactattctagtatatgttttacacagcggatgtccttccagctgcaacccattactgagaaacacccaaacactttcattcactcatacactcatacactacggccaatttagttaattaattctctaatagcgcatgtgtttgaactatGAGGGAATTCGGagcacgagaacatgcaaactccacacagaaacgctaactgacccagctgggactcaaaccagtgaccttcttgctgtgaggcaacagtgctaaccactgagccacctttcacattatttcctatcatatttttcttttggagaaagtctttatttcttttagttttgctagattaaaactattttgatttcatttttaaataaaaggtcgATATTATTCGCCCCCTCACGTaaaatttaagttgttttttttttaagatttatttttgggatttttatgacagttaaaaaacaaaagtaaaaaaagacaacaacagtACAAATAGAAAAAAGTATATAACAGTacaaaattgataaaaatatatataaaataaaccacACTATAATCCTCATATTGTGCGACGCACAGTATAGGATGTGCACAAACAATATATCGTGtgcattaatttttaaaattgagCATATAAACAGGTCGGTACCGGAAGTTGGGGTTGACAGCCTGGTGCATTAAgtcaaataaacaatgataataaaagaaAAGATCAAATTCAAAGTGagagaaaacagaa
>TCONS_00055139
AGCATGCAGCAGCAGTGGGTGTGTGTGgctttattagccctcctgactGTCACAGCGACACTTGCAGATGGTgggaaaacagaaaaacaagGTAAGAAAGAGCGTAAATCGGACTGTGGAGAGTGgcagtggagtgtgtgtgtggccaATGAGGGCGACTGCGGATTGGGAACCAGAGAGGGCACACGCTCCGGCAATGACtgcaaacagaccatcaaaaccCAGCGCTGCAAAATCCCATGCAACTGGAAGAAGCAGTTTGGAGGTGAGTGTAAGTATGATTTCCAGGCATGGGGAGAGTGTGATTCGACCACAGGAATGAAGACTCGCACTGGAGTGCTAAAGCGAGCGCTGATGGATGCTAACTGTCCAAACACAGTCAGCGCCACCAAACCCTGTGGCAAACCCAAGACCAAGATGCAAGACTCTCAGAAACCAAAACGGGACGGAAAGAAGAAGGAGCGAAACCCTACAGACTAG

Function

symbol description
ptn Enables growth factor activity. Acts upstream of or within nervous system development. Predicted to be located in extracellular region. Is expressed in central nervous system and pharyngeal arch. Human ortholog(s) of this gene implicated in adrenal carcinoma. Orthologous to human PTN (pleiotrophin).

GO:

id name namespace
GO:0007399 nervous system development biological_process
GO:0008083 growth factor activity molecular_function

KEGG:

id description
ko00536 Glycosaminoglycan binding proteins

ZFIN:

id description
ZDB-GENE-030624-1 Enables growth factor activity. Acts upstream of or within nervous system development. Predicted to be located in extracellular region. Is expressed in central nervous system and pharyngeal arch. Human ortholog(s) of this gene implicated in adrenal carcinoma. Orthologous to human PTN (pleiotrophin).

Ensembl:

ensembl_id ENSDARG00000102340

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055138 False 2545 mRNA 0.40 5 1301436 1360495
TCONS_00055139 True 480 mRNA 0.52 4 1303337 1324141

Neighbor

gene id symbol gene type direction distance location
XLOC_028393 NA coding downstream 41695 1054661 ~ 1259741 (-)
XLOC_028394 NA coding downstream 67200 1223164 ~ 1234236 (-)
XLOC_028392 NA coding downstream 265390 1028836 ~ 1036046 (-)
XLOC_028391 NA coding downstream 277736 1022316 ~ 1023700 (-)
XLOC_028390 NA coding downstream 285540 1014548 ~ 1015896 (-)
XLOC_028396 CABZ01068469.1 coding upstream 28470 1388965 ~ 1403077 (-)
XLOC_028397 zmp:0000000711 coding upstream 108611 1469106 ~ 1497384 (-)
XLOC_028398 arid2 coding upstream 286603 1647098 ~ 1684347 (-)
XLOC_028399 gas2l3 coding upstream 328817 1689312 ~ 1720648 (-)
XLOC_028400 tm7sf3 coding upstream 372330 1732825 ~ 1757460 (-)
XLOC_028389 NA non-coding downstream 288341 1010960 ~ 1013095 (-)
XLOC_028406 NA non-coding upstream 488165 1848660 ~ 1855771 (-)
XLOC_028408 NA non-coding upstream 555291 1915786 ~ 1979057 (-)
XLOC_028417 NA non-coding upstream 1031577 2392072 ~ 2440175 (-)
XLOC_028418 NA non-coding upstream 1085262 2445757 ~ 2479720 (-)
XLOC_028422 NA non-coding upstream 1303673 2664168 ~ 2666870 (-)

Expression


Co-expression Network