XLOC_028396 (CABZ01068469.1)


Basic Information

Item Value
gene id XLOC_028396
gene name CABZ01068469.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1388965 ~ 1403077 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055140
cacacTCGCAACAACACGACAATGAACACAAAGAAAACTGATGCACAGAAACACATCCGTGCTCTGTTCACAGTGCCCAGAcagagGTTGGATCTGCTGCCGTTTTACGCCCGTCTGGTGGCCACTCTTCACCCGTGTATGTCTGACGTGGCTGAAGACCTCTGCTCCATGCTCAAAGGAGACTTCAGATTTCATatCAGAAAGAAGGACCAAATCAACATTGAGACCAAGAATAAGACGGTGAGGTTCATCGGAGAGTTGGCCAAGTTTAAGATGTTCTCCAAAACAGACACGCTGCACTGCCTGAAGGTGAGCAGAATGGCCTGCACGCTGCTGGAGACGTGTGGACGTTTCCTCTTCCGCTCTCCAGATTCTCACCTGCGCACGAGTGTCCTGCTGgaGCAGATGATGCGCAAGAAGCAGGCTCAGCATCTGGATGTGCGCTACGTGACCATGGTGGAAAACGCCTATTACTACTGCAACCCTCCGCCGATGGAGAAGACGGTGCGCAGGAAGAGGCCTCCGCTGCAGGAGTACATCCGAAAACTGCTCTATAAAGACCTGTCCAAAGTCACCACTGAGAAGgttttGAGGCAGATGCGTAAGCTGCCGTGGCATGACAGTGAGGTGAAGGGTTACCTGATCTGCTGTATGGTCAACATCTGGAACGTGAAGTATAACAGACTGGTGGCGTATCAGGAGGACGTGGGCATTCATGTGGTGGACGGAGTGCTGGAGGATATTCGCCTCGGCATGGagGTGAATCAGCCCAAGTTTAACCAGCGGCGGATCAGCAGTGCTAAGTTTCTGGGTGAGCTGTATAACTATCGAATGGTGGAGTCTGCTGTCATCTTCAGGACTCTGTTCTCCTTCATCTCGTTCGGGGTGAACACGGACGGTACTGCCAGTCCTCTGGATCCGCCGGAGCATCTGTTTCGCATCCGCATGGTCTGCACACTTCTGGATACCTGTGGACAGTACTTCGACCGCGGCTCCAGCAAGAAGAAGCTCGACTGCTTCCTCATTTACTTCCAGaggtACATCTGGTGGAAGAAGAGTCTGGACGTGTGGACTAAAGATCAGCCGTTCCCTATTGACATCGAGTACATGATCACAGACACACTGGAGATGCTGAGACCCAAGATGAAGCTCTGCTCATCTCTGGAGGAGGCCTGCGCTCACGTCAGCCTGCTGGAGAGAGAGTTCCTTGTCAAACTGGgacTGGAGAAGGACGGCCGCTCCTCCAGCTCTTTGGGCGAGAGTGAAGCTCTGGATgaagaggatgatgatgatgaagatgaaggagGAGCGGAGACGGAGGAGCAGTCCGGGAACGAGAGCGAGATGAATGAACCCGAGGAGGAGGTGAACATCATCACTGTAAACGCACACAGAGCCACTGCACAGATATGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000111388

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055140 True 1413 mRNA 0.53 11 1388965 1403077

Neighbor

gene id symbol gene type direction distance location
XLOC_028395 ptn coding downstream 28470 1301436 ~ 1360495 (-)
XLOC_028393 NA coding downstream 129224 1054661 ~ 1259741 (-)
XLOC_028394 NA coding downstream 154729 1223164 ~ 1234236 (-)
XLOC_028392 NA coding downstream 352919 1028836 ~ 1036046 (-)
XLOC_028391 NA coding downstream 365265 1022316 ~ 1023700 (-)
XLOC_028397 zmp:0000000711 coding upstream 66029 1469106 ~ 1497384 (-)
XLOC_028398 arid2 coding upstream 244021 1647098 ~ 1684347 (-)
XLOC_028399 gas2l3 coding upstream 286235 1689312 ~ 1720648 (-)
XLOC_028400 tm7sf3 coding upstream 329748 1732825 ~ 1757460 (-)
XLOC_028401 dnajc2 coding upstream 363256 1766333 ~ 1785120 (-)
XLOC_028389 NA non-coding downstream 375870 1010960 ~ 1013095 (-)
XLOC_028406 NA non-coding upstream 445583 1848660 ~ 1855771 (-)
XLOC_028408 NA non-coding upstream 512709 1915786 ~ 1979057 (-)
XLOC_028417 NA non-coding upstream 988995 2392072 ~ 2440175 (-)
XLOC_028418 NA non-coding upstream 1042680 2445757 ~ 2479720 (-)
XLOC_028422 NA non-coding upstream 1261091 2664168 ~ 2666870 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000068_00403574_00413532 UPF2 coding CI01000068 null 403574 ~ 413970 (+)