XLOC_028397 (zmp:0000000711)


Basic Information

Item Value
gene id XLOC_028397
gene name zmp:0000000711
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1469106 ~ 1497384 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055141
CGTGGGATGTGTTACTTTTCACATTGCTTTTCAAAACGAGCCATTCGCCGTGGTTTAAAATGCAGCTGttttgtagaaaataatataaacatttctcattaacttccggccacagctgtatcccttctagcaacaaacATGACCTGAGCATGTGCGCTTGCGCGTGCTCGTCATGGTGGCTGCGGGTTTTGCGCACAGGGACGCGACGCTGCAGCCTCGGAGGGACCCATAGCAACGGCGGATAAACATGAGTTACTACAGCAGACCCTCCAGTTCTTCCAGCTTCGCGTCCACAGTCATGACCAGCTCACTGGAGGACGACAGCCTGAACCTCAGGCAGCAGAAACTGGAGAAACAGAGGGCTCTGCTGGAGCAGAAGCAGCGGCGGAAGCGTCAGGAGCTTCTGATGGTTCAGCCAAACCCTGATGGCCGACCGAGACGCTCACGGCCCAGACGCAGCGAAGAGCAGGCGCCTCTGGTGGAGACCAACATCAGCACCGCCAGTGACATCATACTCGACGGCATTGATGGACCTGCAGCACTGCTGGGTTCAGAAGCTCCTGATCTGGGCAGTAAGATCCAGGTTTTGTCGGTCAGTCAAACACCACAGCAGCCGTCACCGCCTGTGACAGAAGAGCCAGAGACAGATGCTGACACCGACACACTGCTGGAGCCCAAAACTGACATACACACACTGCTGCAGAGACGCGGTCTGTCTGGCAGCATGAACTATGATGAAGCCAGTGAggatgaggatgaagatgatgaataCGAAGCTGAAGAGCGAAGCCGGTCTCTGTCCCCGAACACCGAGAGCACTCGGCCGGCGTCTGCATCCAGCACTAAATCCACTACAGAGTGCATCCCGGTGGGCTCTCCATCAGCTGAGGGCTCCTCCATTGAGGTGGACAATCTGGAGGAGTTTGTTCTCCGTCCGGCTCCACAGGGAGTCACGGTGAAGTGCCGCATCTCTCGGGATAAGAAAGGCATGGACCGCGGCCTCTACCCCACATACTTCATGCATCTTGAGAGAGAAGACGGCAAAAAGGTGTTTCTATTGGCGGGACGCAAGAGGAAAAAGAGCAAAACATCCAACTATCTGATCTCTGTAGACGCCACAGATCTGTCCCGCGAGGGCGAGAGCTTCATCGGGAAACTCAGGTCTAATCTGATGGGAACCAAGTTTACAGTGTATGATAACGGCACAAACCCATCTAAAAACCCTGGTGCGCTGCTGGAGGAGACAAACACACGACAGGAGCTCGCCGCCATATGCTACGAGACCAATGTTCTGGGTTTTAAAGGGCCGCGGAAGATGACTGTGATCATTCCTGGCATGAACATGAGTTTTGAGCGGGTCCCGGTTCGGCCTGCCTCTgagcaGGAGTCTCTGCTGAGTAAATGGCAGAATCATTCGCTGGAGAACCTCATCGAGCTGCATAATAAAGCGCCGGTGTGGAACGATGACACACAGTCTTACGTGCTGAACTTCCACGGCAGAGTCACTCAGGCCTCCGTCAAGAACTTCCAGATCGTCCACGACAATGACCCGGACTACATCGTGATGCAGTTTGGCCGTGTGGCGGAGGACATCTTCACTCTGGACTATAACTACCCCATGTGTGCCCTGCAGGCCTTCGCCATCGGCCTGTCCAGCttcgacagcaagctggcctgcGAGTGaccctgagacacacacacatgtatacatacacaccaCACATGTTGGTATAATGCactacaaaaatgcttttcttacttagatatttaattttttctactccaaatatctaacaattcttaaatcaagaagcattttctagacaagcaaaaaatactgtcttgttttcagaaataatatgccagaTATTCGTGTTATtccttttaaaataagtttttttttagctcaacCCATTtgtagattatttagcttgttttaaggtaaaactcacttaattttggcatattatttcttaaagtaAGACAATGTGTTTTACTTGTCtataaaaagcttcttgatttaagaattttcagatatctggactagaaacaagacagaaaatctaagtaagaaaagtatATTTTGCCGTGTGGTGGTTAACGAGGACACTTTGTAGGTGTgatgtattttatacattaaaaatgcttACTATATGGCTCAACGcctaaaccacaggtgtcaaactcagttccaggagggccgcagctctgcacagtttagttccaacccaaattaaatacacctgattaaactaattcaTTCAAGCTTGTTTGaagcctacaggtaagtgtgttggaacatggttggaactaaactgcagggctgcggccctccaggaactgagtttgacacccctgccctaaacccaaccctcagagCAAACCTGTGGCAATATTTGAATGTGAAAAGACCCCATAAAGTATAATTCTAAAGCAtattgaattacaaggacacaaggcatgtctttgtaaacaaaataatagagtacaactaaggTTTACCCATGTCAATATACAAAtttctgtccttgtaaaccaccaaaccagtacacacacacacacacaagcctctcATGCTCAGGTCACCTCATCTGTCCTACAATTCACACCAGAGCAAGAGGACTTGTACTCCATttcaacaaattaaacaaaagagACCAAATTAACTGTTGTACAAGGCAAATGCTTCATCTAATCTTTTACTACCTGGAATAACTGACAAGAtcctctttttttctgaaaagagAAGCTGGATTTATGCTTAACGAACCAATAGAAAAGAAACCGAGGTTTGTTCTTACACTGACAGATTATATTTAGGATACTTATGATATTTTCTGTGCTGTTCTGATGGATCTAAAGAGTATGTGGTTAGGGAGAGTGTTCAGAACATTTCAccactaaaactaaaaaaattatattttgcatcaagaaaattaattaattacgagcaaaaacaaaataatgtaataaCGATAGTTTTATGACTTGCACTACTTTGTACTAGATGCATTAGAGATAATTGGAATTTTTAAGTTAATTTTCTTTGTGTacaatataattcattcattttccctctttTGATATGAAGGTGATGTGCTCTAAATGTATTTTCAtaagatttagattttaaattCAGATGATGTTGATGTATTTTTGATGGTTTTAACACTTTCTGTTTTAACTTCATATCTGCTCACCAAAAATCCCTGAGAAAATACATTGCATGCTAATCAATGAAGAAGAACGCTGGATTCTTCTCTCTCGTCCCCTCGTATTAACCTTTCAAAACGGACACACACTTCTGGTTGTTTACCGCTGCTGCATGGATTGTGAACGTTGCCTTAATATGTTGCTGTACTGTAAATAGTGTCTGAGTGTCAGAAGAGTGTTTACATCACAGAGAAGGGAAGTTCAAGCACATTTGTTCCTGTTCAGTGTGTATTCCTATTGATATGATTGATATGTGTGTTGGTGTTTATCATATgttgtgtgtctatatatatatatataaagtaaaacattttgttttcattttaaatcaataaCCTGTTTGCAcaaactgtatttttgatgacacTGTTAATAGAAATACAGTTATTAAAGgtcataaatatttacaaaatgaatGCATTACTTTGGATCCTGACTGTGTGACTAAAGCTGGATAATTAAAAACCTGCTACACATTTCTCAGCCAAAGGATTTAGCTTTCAAGCTGCATCTTTCTCATAGATTGAGATCATTTCTTTCTGATCAGTTGTATTTTTC

Function

symbol description
zmp:0000000711 Predicted to be located in extracellular region. Orthologous to human TULP3 (TUB like protein 3).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-714 Predicted to be located in extracellular region. Orthologous to human TULP3 (TUB like protein 3).

Ensembl:

ensembl_id ENSDARG00000063672

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055141 True 3771 mRNA 0.43 12 1469106 1497384

Neighbor

gene id symbol gene type direction distance location
XLOC_028396 CABZ01068469.1 coding downstream 66029 1388965 ~ 1403077 (-)
XLOC_028395 ptn coding downstream 108611 1301436 ~ 1360495 (-)
XLOC_028393 NA coding downstream 209365 1054661 ~ 1259741 (-)
XLOC_028394 NA coding downstream 234870 1223164 ~ 1234236 (-)
XLOC_028392 NA coding downstream 433060 1028836 ~ 1036046 (-)
XLOC_028398 arid2 coding upstream 149714 1647098 ~ 1684347 (-)
XLOC_028399 gas2l3 coding upstream 191928 1689312 ~ 1720648 (-)
XLOC_028400 tm7sf3 coding upstream 235441 1732825 ~ 1757460 (-)
XLOC_028401 dnajc2 coding upstream 268949 1766333 ~ 1785120 (-)
XLOC_028402 nudt4b coding upstream 291364 1788748 ~ 1801619 (-)
XLOC_028391 NA non-coding downstream 445406 1022316 ~ 1023700 (-)
XLOC_028389 NA non-coding downstream 456011 1010960 ~ 1013095 (-)
XLOC_028406 NA non-coding upstream 351276 1848660 ~ 1855771 (-)
XLOC_028408 NA non-coding upstream 418402 1915786 ~ 1979057 (-)
XLOC_028417 NA non-coding upstream 894688 2392072 ~ 2440175 (-)
XLOC_028418 NA non-coding upstream 948373 2445757 ~ 2479720 (-)
XLOC_028422 NA non-coding upstream 1166784 2664168 ~ 2666870 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000068_00161849_00169705 NA coding CI01000068 null 161849 ~ 169829 (+)