XLOC_028404 (mrpl42)


Basic Information

Item Value
gene id XLOC_028404
gene name mrpl42
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1821637 ~ 1824836 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055151
tccgTTCTACATAATATTGGTACTGTTAGCAGTAAGCATGGCGTCGGGTCACATCAGCAGACTAGCAAACCTGTTTACCTCAGTCAACCCCAGTAAACATTTAAAACCCTTCAGAGGATTATTTTTGTCATCTGTCAGCAAATCTACTGTTGGAGGATCATCCATTCACGACGACAGCAATGTGGAAATCGCCGTGACATCTGATGGAAACACAATAGTATGTTTTCATCCAGCAGATGACGTTCCCTATGAGCTCACGCAGCCTATCGTCAGACCAGACGCCATCAGCGGTCATGCAGAAACACATGAACAAGTGCTCAAAGACAGACTCGGTAAAGCTGTTCTAGCAGACAAAAAGGCTCCGACTATTGAAGAGCTCAGTAAGATGTTTTACACAACCAAACACCGCTGGTACCCTGTCGGACAATTTCACAACAGACGCAGGAAACTAAATCCACCCAAAGACCGATAGATCtggatttgtttgtgttttctgtATTCTTGTGCATGCACTGACTCAATAAATCCTTTGTTTAGCTGTTGCTGCAGATATTTGTGTCATATAATTTGTTAATGATCAATTAAACACCATTAAAATAAGcattcaatatttaaaaacagaaa

Function

symbol description
mrpl42 Predicted to be located in mitochondrion and ribosome. Orthologous to human MRPL42 (mitochondrial ribosomal protein L42).

GO: NA

KEGG:

id description
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-101014-1 Predicted to be located in mitochondrion and ribosome. Orthologous to human MRPL42 (mitochondrial ribosomal protein L42).

Ensembl:

ensembl_id ENSDARG00000079391

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055151 True 624 mRNA 0.41 5 1821637 1824836

Neighbor

gene id symbol gene type direction distance location
XLOC_028403 ube2nb coding downstream 3322 1809562 ~ 1818315 (-)
XLOC_028402 nudt4b coding downstream 20018 1788748 ~ 1801619 (-)
XLOC_028401 dnajc2 coding downstream 36517 1766333 ~ 1785120 (-)
XLOC_028400 tm7sf3 coding downstream 64177 1732825 ~ 1757460 (-)
XLOC_028399 gas2l3 coding downstream 100989 1689312 ~ 1720648 (-)
XLOC_028405 pwp1 coding upstream 1003 1825839 ~ 1839352 (-)
XLOC_028406 NA coding upstream 23824 1848660 ~ 1855771 (-)
XLOC_028407 ano6 coding upstream 53737 1878573 ~ 1914228 (-)
XLOC_028408 NA coding upstream 90950 1915786 ~ 1979057 (-)
XLOC_028409 si:ch73-177h5.2 coding upstream 96175 1921011 ~ 1930024 (-)
XLOC_028393 NA non-coding downstream 561896 1054661 ~ 1259741 (-)
XLOC_028394 NA non-coding downstream 587401 1223164 ~ 1234236 (-)
XLOC_028392 NA non-coding downstream 785591 1028836 ~ 1036046 (-)
XLOC_028391 NA non-coding downstream 797937 1022316 ~ 1023700 (-)
XLOC_028389 NA non-coding downstream 808542 1010960 ~ 1013095 (-)
XLOC_028417 NA non-coding upstream 567236 2392072 ~ 2440175 (-)
XLOC_028418 NA non-coding upstream 620921 2445757 ~ 2479720 (-)
XLOC_028422 NA non-coding upstream 839332 2664168 ~ 2666870 (-)

Expression


Co-expression Network