XLOC_028412 (kcnc2)


Basic Information

Item Value
gene id XLOC_028412
gene name kcnc2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 2060524 ~ 2196928 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055166
TGCAGACGGGCTCGCCGCTGTACTGCAGAACTGATCTGAGCACAGCCTGCAACAGCACACAGGGGGAGCTGTGTATCGGACAGAGCCGAGGACTGGAGAGACATCGCTCAGTGCTGTCGGCTGACTGCAGCGCAGGAAGTGACATCAGCATGTCTCCAGAGGAGCGCATGCCCATGCGTCACTCCAGCGTCCGTGAACAGGACCATCACACAGAGGGCACGTGTTTCCTGCTAGCCCCCAGCGACTACACCTGCACCGCAGACGCAGCCATACGGAAAACAGAACTCGGACACGACCGTCTTCTTGGGCATGGCACTGGAGTCTGACTGGAAGAGCTTCAGCAGATGATACAGAGTGACCTGAAgagaaaaacaacatcaaaacctCATGCTTTTCTTACTTCCGTGCATTTTTGTGGTCTTCAAAGTGGTGGAATGTTTATGGAAAACTGTGgaaaataatttaacaatttatcaaGCTATTTAGTAATTATTCTTTTATAATTTCAGGGGTTTTCCTGGCTCTAAATGAGGCGCCCAGGAATGATTTGCTActtgaaacaaacacattttgcattttttttttactttttttttatttaaaatatatctttaaacCCTTTTTAACCCattttgcttgcttttttaatCTTATTAAGTAAAACatcatcttatttttttaaacctttgaACAATTAAAagattgtttcattttatttcatattttcaccatttttcacagtttagatttttatataaatatagtgtgagtcctttttttttcatttgaagatTTCTTGCTAAACAATGGTCATATTTtgcatcttaaaaaaaacaaaaatgtaatgtacac
>TCONS_00055167
AAAAGCAACGTGCAAAACCATCCTATATGCTTCATGAGTGCATGATATAATAGATCTTTCATCGCCTTCGCCTCCTTGTTTTTCATCATGGTCTCCATCACCACCTTCTGCCTGGAAACTCACGAAGCCTTCAACACCATCATCAACAAGACGGATCCACTGCGAAACGAAACGCTGACCGACATCAGCCAGCAATACGAGATCGAGACCGACCCGGCACTCACATACGTGGAGGGAGTCTGCGTGCTGTGGTTCACCTTCGAGTTTCTGGTGCGCATCACATTCAGCCCGGACAAACTGGAGTTCATCAAGAGCGTCCTGAACATTATTGACTTTGTGGCCATATTGCCGTTTTACCTGGAAGTGGGACTGAGTGGACTTTCCTCCAAAGCTGCTAAAGACGTGCTGGGTTTTCTGCGAGTGGTGCGTTTCGTTCGCATCCTGCGGATCTTCAAGTTGACTCGTCACTTTGTAGGGCTCCGCGTATTGGGACACACTCTCCGTGCAAGCACTAACGAATTCCTCCTCCTCATTATCTTCCTAGCGCTGGGCGTCTTAATATTCGCTACCATGATCTACTACGCCGAGCGGATCGGCGCCAGTCCCAATGACCCAACAGCAAGTCATCACACTATGTTTAAAAATATCCCTATTGGCTTTTGGTGGGCTGTTGTTACAATGACAACATTGGGTTATGGTGATATGTACCCTCAAACGTGGTCTGGGATGGTTGTGGGAGCGTTGTGTGCCCTCGCTGGCGTGCTCACGATAGCGATGCCGGTGCCGGTTATCGTTAATAACTTCGGCATGTATTATTCGCTGGCCATGGCTAAACAGAAGCTCCCGAAGAAGAGGAAGAAGCACATCCCGCAGGCGGTGCAGACGGGCTCGCCGCTGTACTGCAGAACTGATCTGAGCACAGCCTGCAACAGCACACAGGGGGAGCTGTGTATCGGACAGAGCCGAGGACTGGAGAGACATCGCTCAGTGCTGTCGGCTGACTGCAGCGCAGGAAGTGACATCAGCATGTCTCCAGAGGAGCGCATGCCCATGCGTCACTCCAGCGTCCGTGAACAGGACCATCACACAGAGGGCACGTGTTTCCTGCTAGCCCCCAGCGACTACACCTGCACCGCAGACGCAGCCATACGGAAAACAGACTGTGGATGTGCTGAAGCTGTACTGTGGAGTCATTTCTCTGTCGGCCTCTTCTAGTGCATGCGAAGAGCCTAACTGTAAAGACTGAGTCTGAAGATCATGTGTAGTTCAATGCCATGTGAGACGGTCGGATAAACATATTCACCTTGTACAAAA
>TCONS_00055168
TGAGCACAGCCTGCAACAGCACACAGGGGGAGCTGTGTATCGGACAGAGCCGAGGACTGGAGAGACATCGCTCAGTGCTGTCGGCTGACTGCAGCGCAGGAAGTGACATCAGCATGTCTCCAGAGGAGCGCATGCCCATGCGTCACTCCAGCGTCCGTGAACAGGACCATCACACAGAGGGCACGTGTTTCCTGCTAGCCCCCAGCGACTACACCTGCACCGCAGACGCAGCCATACGGAAAACAGCCACTGTTTCTCCCCTGGCCGATGTTCAGTTTATATCAGCCAGAGACGGGGAGGGCGGAGCCAGCAGAGACTCTGATGGATTTGACGAACTGGATTGGACGGTCTGGAATAGAATAAGCCTGTGATTGGACGGTTCTCATAGATGGACATCTTCATCCAACGGACTGGATTTTCCTGTGTGAAAGTCGAaagaaacaaatgtaaaaatcctGACGTGGATCTAGTGAAACGTGCTTCAATCCGGCGGGCTCTCCATTTTAAATGTGGCATCTGTATAAAAGGACACACATTCACGCGTGGCTTCCCTCTGTGTCAGGTAGCAAATCCAGCACCCTTTTCCAGGCCTCTGTCAGTGCAATAAGTGTATTACGATGTGTAGAGGCACAAGTGTTGAACTCGAGTATTAGTGTATCGACTTTTCTGAACTACACCATAGAGCGAGAGAGACTATAAC
>TCONS_00055169
ATGGGCAAGTTCGACGAGCGCGAGAGGGTAATCCTCAACGTCGGCGGCACGAGGCACGAGACCTACCGGAGCACGCTAAAGACACTGCCGGGCACGCGACTGGCGCTGCTCGCCTCCGAGTCCGATCTCGAGTTGGTTTTGGATCAGCTGCAACAAGTGCCTGGATTCATCGAGTACAGCGCGCGGAGCAACGAGTACTTCTTCGACCGGCACCCGGGCGTTTTCGCCTACGTGCTCAACTATTACCGGACCGGGAAGCTGCACTGCCCGGCGGACGTGTGCGGTCCGCTGTTCGAGGAGGAGCTCTCCTTCTGGGGCATCGATGAGACGGACGTGGAGCCGTGCTGCTGGATGACCTACCGACAGCACCGCGATGCCGAGGAGGCGCTGGACGTGTTTGAGATGAACGTGGACACCGAGGAGGACGACGAGTACGGGAAGCGGCTGGGCATTGAGGACGTGGTGTCCGCGGACGGCACCGTGAGCCGCTGGAGGAGGTGGCAGCCGGTCATCTGGAACCTTTTTGACGACCCGTACTCCTCCAGAGCCGCGCGGTTCATCGCCTTCGCCTCCTTGTTTTTCATCATGGTCTCCATCACCACCTTCTGCCTGGAAACTCACGAAGCCTTCAACACCATCATCAACAAGACGGATCCACTGCGAAACGAAACGCTGACCGACATCAGCCAGCAATACGAGATCGAGACCGACCCGGCACTCACATACGTGGAGGGAGTCTGCGTGCTGTGGTTCACCTTCGAGTTTCTGGTGCGCATCACATTCAGCCCGGACAAACTGGAGTTCATCAAGAGCGTCCTGAACATTATTGACTTTGTGGCCATATTGCCGTTTTACCTGGAAGTGGGACTGAGTGGACTTTCCTCCAAAGCTGCTAAAGACGTGCTGGGTTTTCTGCGAGTGGTGCGTTTCGTTCGCATCCTGCGGATCTTCAAGTTGACTCGTCACTTTGTAGGGCTCCGCGTATTGGGACACACTCTCCGTGCAAGCACTAACGAATTCCTCCTCCTCATTATCTTCCTAGCGCTGGGCGTCTTAATATTCGCTACCATGATCTACTACGCCGAGCGGATCGGCGCCAGTCCCAATGACCCAACAGCAAGTCATCACACTATGTTTAAAAATATCCCTATTGGCTTTTGGTGGGCTGTTGTTACAATGACAACATTGGGTTATGGTGATATGTACCCTCAAACGTGGTCTGGGATGGTTGTGGGAGCGTTGTGTGCCCTCGCTGGCGTGCTCACGATAGCGATGCCGGTGCCGGTTATCGTTAATAACTTCGGCATGTATTATTCGCTGGCCATGGCTAAACAGAAGCTCCCGAAGAAGAGGAAGAAGCACATCCCGCAGGCGGTGCAGACGGGCTCGCCGCTGTACTGCAGAACTGATCTGAGCACAGCCTGCAACAGCACACAGGGGGAGCTGTGTATCGGACAGAGCCGAGGACTGGAGAGACATCGCTCAGGTGAGACGCTTGTGCATCTACATGCAGTGCTGTCGGCTGACTGCAGCGCAGGAAGTGACATCAGCATGTCTCCAGAGGAGCGCATGCCCATGCGTCACTCCAGCGTCCGTGAACAGGACCATCACACAGAGGGCACGTGTTTCCTGCTAGCCCCCAGCGACTACACCTGCACCGCAGACGCAGCCATACGGAAAACAGGCTCGGAGAAGTCTCGGAGTTTAAACAACGTGTACAGCGCTCTCCATCTCTCTCCAGTGACCTCGCCCTGTCCCATTCGCCGCAACCGCACACCATTCCTGTCTGTCAGCTGA
>TCONS_00055170
gacagacaaacagacgcgCTCCGGCGAGAGCGTGCGCGTGTGTTATTCTCCTGTTCAATGAGCTTGTTGGCGAACTATCGGAGTACTCACAGCACCGTCGCCCCCCTCGCGTCATGTCTCACCCTGAGAGATGGGCAAGTTCGACGAGCGCGAGAGGGTAATCCTCAACGTCGGCGGCACGAGGCACGAGACCTACCGGAGCACGCTAAAGACACTGCCGGGCACGCGACTGGCGCTGCTCGCCTCCGAGTCCGATCTCGAGTTGGTTTTGGATCAGCTGCAACAAGTGCCTGGATTCATCGAGTACAGCGCGCGGAGCAACGAGTACTTCTTCGACCGGCACCCGGGCGTTTTCGCCTACGTGCTCAACTATTACCGGACCGGGAAGCTGCACTGCCCGGCGGACGTGTGCGGTCCGCTGTTCGAGGAGGAGCTCTCCTTCTGGGGCATCGATGAGACGGACGTGGAGCCGTGCTGCTGGATGACCTACCGACAGCACCGCGATGCCGAGGAGGCGCTGGACGTGTTTGAGATGAACGTGGACACCGAGGAGGACGACGAGTACGGGAAGCGGCTGGGCATTGAGGACGTGGTGTCCGCGGACGGCACCGTGAGCCGCTGGAGGAGGTGGCAGCCGGTCATCTGGAACCTTTTTGACGACCCGTACTCCTCCAGAGCCGCGCGGTTCATCGCCTTCGCCTCCTTGTTTTTCATCATGGTCTCCATCACCACCTTCTGCCTGGAAACTCACGAAGCCTTCAACACCATCATCAACAAGACGGATCCACTGCGAAACGAAACGCTGACCGACATCAGCCAGCAATACGAGATCGAGACCGACCCGGCACTCACATACGTGGAGGGAGTCTGCGTGCTGTGGTTCACCTTCGAGTTTCTGGTGCGCATCACATTCAGCCCGGACAAACTGGAGTTCATCAAGAGCGTCCTGAACATTATTGACTTTGTGGCCATATTGCCGTTTTACCTGGAAGTGGGACTGAGTGGACTTTCCTCCAAAGCTGCTAAAGACGTGCTGGGTTTTCTGCGAGTGGTGCGTTTCGTTCGCATCCTGCGGATCTTCAAGTTGACTCGTCACTTTGTAGGGCTCCGCGTATTGGGACACACTCTCCGTGCAAGCACTAACGAATTCCTCCTCCTCATTATCTTCCTAGCGCTGGGCGTCTTAATATTCGCTACCATGATCTACTACGCCGAGCGGATCGGCGCCAGTCCCAATGACCCAACAGCAAGTCATCACACTATGTTTAAAAATATCCCTATTGGCTTTTGGTGGGCTGTTGTTACAATGACAACATTGGGTTATGGTGATATGTACCCTCAAACGTGGTCTGGGATGGTTGTGGGAGCGTTGTGTGCCCTCGCTGGCGTGCTCACGATAGCGATGCCGGTGCCGGTTATCGTTAATAACTTCGGCATGTATTATTCGCTGGCCATGGCTAAACAGAAGCTCCCGAAGAAGAGGAAGAAGCACATCCCGCAGGCGGTGCAGACGGGCTCGCCGCTGTACTGCAGAACTGATCTGAGCACAGCCTGCAACAGCACACAGGGGGAGCTGTGTATCGGACAGAGCCGAGGACTGGAGAGACATCGCTCAGTGCTGTCGGCTGACTGCAGCGCAGGAAGTGACATCAGCATGTCTCCAGAGGAGCGCATGCCCATGCGTCACTCCAGCGTCCGTGAACAGGACCATCACACAGAGGGCACGTGTTTCCTGCTAGCCCCCAGCGACTACACCTGCACCGCAGACGCAGCCATACGGAAAACAG

Function

symbol description
kcnc2 Predicted to enable delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in axon; dendrite membrane; and neuronal cell body membrane. Predicted to be integral component of membrane. Orthologous to human KCNC2 (potassium voltage-gated channel subfamily C member 2).

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0032590 dendrite membrane cellular_component
GO:0030424 axon cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0032809 neuronal cell body membrane cellular_component
GO:0005216 ion channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function
GO:0005249 voltage-gated potassium channel activity molecular_function
GO:0005251 delayed rectifier potassium channel activity molecular_function
GO:0005267 potassium channel activity molecular_function

KEGG:

id description
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-070410-118 Predicted to enable delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in axon; dendrite membrane; and neuronal cell body membrane. Predicted to be integral component of membrane. Orthologous to human KCNC2 (potassium voltage-gated channel subfamily C member 2).

Ensembl:

ensembl_id ENSDARG00000057468

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055166 False 852 processed_transcript 0.40 3 2060524 2162724
TCONS_00055167 False 1314 mRNA 0.52 4 2147291 2168805
TCONS_00055168 False 700 mRNA 0.51 3 2151379 2162688
TCONS_00055169 False 1797 mRNA 0.57 4 2157861 2196798
TCONS_00055170 True 1787 mRNA 0.57 3 2160862 2196928

Neighbor

gene id symbol gene type direction distance location
XLOC_028411 cpsf6 coding downstream 1222 2041067 ~ 2059302 (-)
XLOC_028410 FAR2 coding downstream 23904 1988460 ~ 2036620 (-)
XLOC_028408 NA coding downstream 81467 1915786 ~ 1979057 (-)
XLOC_028409 si:ch73-177h5.2 coding downstream 130500 1921011 ~ 1930024 (-)
XLOC_028407 ano6 coding downstream 146296 1878573 ~ 1914228 (-)
XLOC_028413 si:ch73-278m9.1 coding upstream 13389 2210317 ~ 2219705 (-)
XLOC_028414 krr1 coding upstream 62007 2258935 ~ 2265271 (-)
XLOC_028415 phlda1 coding upstream 152407 2349335 ~ 2350371 (-)
XLOC_028416 nap1l1 coding upstream 157964 2354892 ~ 2380173 (-)
XLOC_028417 NA coding upstream 195144 2392072 ~ 2440175 (-)
XLOC_028406 NA non-coding downstream 204753 1848660 ~ 1855771 (-)
XLOC_028393 NA non-coding downstream 800783 1054661 ~ 1259741 (-)
XLOC_028394 NA non-coding downstream 826288 1223164 ~ 1234236 (-)
XLOC_028392 NA non-coding downstream 1024478 1028836 ~ 1036046 (-)
XLOC_028418 NA non-coding upstream 248829 2445757 ~ 2479720 (-)
XLOC_028422 NA non-coding upstream 467240 2664168 ~ 2666870 (-)
XLOC_028427 NA non-coding upstream 1053846 3250774 ~ 3257564 (-)
XLOC_028428 NA non-coding upstream 1109217 3306145 ~ 3308415 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00006706 kcnc2,LOC103383062 coding CM030134.1 CM030134.1 15564599 ~ 15574755 (-)