XLOC_028414 (krr1)


Basic Information

Item Value
gene id XLOC_028414
gene name krr1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 2258935 ~ 2265271 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00055172
ATGACGACCAGTCGCAGCGTCAGACGTCACTCCTAAAAGCAGCGATGGCGGCTCCCACAGAAAGCACGAGCGAAACGACAAcagataaaaaacagaaaaagagcaAAAATACAGATGATGCTGATCTGCTGACAGTCCCAGATGACTGGAAAGAGCCGAAGTTCACCAAAGCGGACAATCCTAAAGGTCTGCTGGAGGAGAGCAGCTTCGCCACACTTTTCCCCAAATACAGAGAGGCCTATCTGAAAGAGTGCTGGCCGCTGGTGCAGAAGGCCCTCGCCGAGCTCTTCATCAATGCCACACTGGACCTGATTGAGGGCAGTATGACGGTGAACACCACCAAGAAAACATTTGATCCGTATTCAATCATCAGAGCGAGGGATCTCATCAAGTTACTGGCTAGAAGTGTGCCCTTTGAACAGgCTGTACGGATACTCGATGATGACATGGCATGTGACATCATAAAAATTGGGACTCTCGTCCGAAACAGAGAGCGTTTTGTGAAGAGACGACAAAGACTGATCGGCCCCAAAGGCTCCACGCTAAAGGCTTTAGAGCTGCTGACGAACTGTTATGTGATGGTTCAGGGAAACACAGTGTCTGCTTTAGGCCCGTTCAATGGTTTAAAGGAGGTGAGGAAGGTTGTTCTGGACACAATGAAGAACATTCATCCCATTTACAACATAAAGacgcTGATGATCAAGCGTGAGCTTGCGAATGACCCAGAGCTGCGCACTCAGAGTTGGGGCAGATTTCTGCCAAACTTCAGACACAAGAGCCTCTCCAAACGCAAGCAGCCCAAGAAGAAGAGGGTGAAGAAGGAGTACACGCCGTTCCCACCGCCACAGCCCGAGAGCAAGATTGATAAGGAGTTGGCAACAGGCGAGTTCTTCCTTCGTGAGAGCGAGAAGAGACGCAAGAAGATGAGTGAGATTAAGgttaagcAGGCTGAGGCTTTATCTAAACGACAAGAGGAGCGAAAGAAAGCCTTCGTTCCTCCCAAAGAGAAAACAGCAGTGAAGAAGAGCAAACCAGCGACCTCAGAAAACAAAATTGACGTTCAAGCCATTAAAGAAAAAGTGAAGAAAGCGAAAAATAAAAAGCTCGGAGCTCCTCCTGTAAATCCCGACATGTCTTCAGCGAAAGTCGgcaaacagaagaaaaacaagaGCTAAAAAACTCTGGACACCCACAAAAACATGTCAAACATTGTGTTTATTAGCCGTATGTTTATATTAAACTCTCTGATTTCAAAGTGCTCAATGAA

Function

symbol description
krr1 Predicted to enable RNA binding activity. Predicted to act upstream of or within rRNA processing. Predicted to be located in nucleus. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Orthologous to human KRR1 (KRR1 small subunit processome component homolog).

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0032040 small-subunit processome cellular_component
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-060623-10 Predicted to enable RNA binding activity. Predicted to act upstream of or within rRNA processing. Predicted to be located in nucleus. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Orthologous to human KRR1 (KRR1 small subunit processome component homolog).

Ensembl:

ensembl_id ENSDARG00000011246

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00055172 True 1267 mRNA 0.47 10 2258935 2265271

Neighbor

gene id symbol gene type direction distance location
XLOC_028413 si:ch73-278m9.1 coding downstream 39230 2210317 ~ 2219705 (-)
XLOC_028412 kcnc2 coding downstream 62007 2060524 ~ 2196928 (-)
XLOC_028411 cpsf6 coding downstream 199633 2041067 ~ 2059302 (-)
XLOC_028410 FAR2 coding downstream 222315 1988460 ~ 2036620 (-)
XLOC_028408 NA coding downstream 279878 1915786 ~ 1979057 (-)
XLOC_028415 phlda1 coding upstream 84064 2349335 ~ 2350371 (-)
XLOC_028416 nap1l1 coding upstream 89621 2354892 ~ 2380173 (-)
XLOC_028417 NA coding upstream 126801 2392072 ~ 2440175 (-)
XLOC_028418 NA coding upstream 180486 2445757 ~ 2479720 (-)
XLOC_028419 csrp2 coding upstream 246358 2511629 ~ 2525934 (-)
XLOC_028406 NA non-coding downstream 403164 1848660 ~ 1855771 (-)
XLOC_028393 NA non-coding downstream 999194 1054661 ~ 1259741 (-)
XLOC_028394 NA non-coding downstream 1024699 1223164 ~ 1234236 (-)
XLOC_028392 NA non-coding downstream 1222889 1028836 ~ 1036046 (-)
XLOC_028422 NA non-coding upstream 398897 2664168 ~ 2666870 (-)
XLOC_028427 NA non-coding upstream 985503 3250774 ~ 3257564 (-)
XLOC_028428 NA non-coding upstream 1040874 3306145 ~ 3308415 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000066_02325374_02330855 KRR1 coding CI01000066 null 2324998 ~ 2330855 (-)