LOC110538905 (LOC106567547)


Basic Information

Item Value
gene id LOC110538905
gene name LOC106567547
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 48281750 ~ 48582700 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937674.1
CacaagtgagaaagagagaaagaggaaggggagagcatGGGAGACGCAATTGTAGAGCAACACACTGACGCACTGAGAGTGTGAAcggcagaaagagaaagagagaaagaaagagacagagggagagtgaaacTGTGAGTAAAGCTAGAATGAAGCTGAGCCACCGGCAGCAGGGAAGACTGAAGATTTGATTTTCTGGGAAATAGGAGAGGACATAtaaaaagagagcaggagagaagaCGCACACTCTCTCACTGAGAGAGCAGCAGCTGAAGAAGAGAGCTACAGTGccagcccctcacacacagacagacgcacaaCTCTCTTTATACCTCTGCTACTAACTTTGTCTCGGTGTCACCAACATCTCATAGACGGTAGGCACACGGGAGCAGACTTCTTCCCCCGTTACTTCTCTTTAATGATGATGATCCCTTGGCTGGTTCTGTTCTCTTGGATGGCTGGACTTGGGGCCAGTGCAGTGTTCACCCAGCAGCCCACAgacctggtggtggtggcagGTCAGCCGGTGACCCTGCCCTGCTCCATCCCTGGTTACCACGGCATGGTGCTCTGGCTCAGAGACGGCATGGCCCTTGGGGTCAACAGGGACCTCTCAGGCTACCCACGCTATGACATTGTGGGAGACCACAGCAAGGGAGAATACCACCTCTTGATTCAGAGAACTGAAATGCAGGACGACGCCTTCTTTGAGTGCCAGGCCATCCAGGCAGCTATCAGAACACGCCCCGCCCGACTGACTGTGCTCGTTCCCCCTGATGACCCTGTGATTGTTGGGGCACCCGTGGTGAGCCTAAGGGCCGGCGACCCTCTCAACCTGACGTGCCACGCCGACAATGCCAAGCCTGCTGCCTCCATCATCTGGATTCGCAACGGGCAGGTCCTGAATGGCGCCATGTTCTCTAAGACACTGTTGCGGGATGAGCGAAGGGAGAGTACAGTCAGctcactctacctctctgccTCCAACATCGAGACAGGCCAACAAATCACCTGTCGGGCCTCAAACAAGGCCTTGCCCAATGGGAAAGATGCCATTGTCACCATCGACATCCAACACCTGCCCCTGGTCAACCTATCTGTTGAGCCCCAGCCCATACTGGAGGGCAATCTGGTAAAGTTTCACTGCTCTGCCAAAGCTAACCCACCAGTCATCCACTACAGATGGGCCAAAGGGGGCAGCGTCATCAGACAGGTGTCAGGTGACACCTATGAGGTCATCGTGGACCACTCGTTCTTCACAGAGCCCGTCTCCTGTGAGGTCACCAATGCGCTGGGCAGCACCAACATCAGCAGGAACGTGGATGTCTACTATGGGCCCAGAATGGCTGCTGAGCCACAGTCCCTACAGGTTGACCAGGGATCAGATGCTATCTTCAACTGTGCCTGGACAGGAAACCCCTCCCTCACCATTGTGTGGATGAAACGTGGCTCTGGAGTGGTGCTTAGCAATGACAACATCCTGACGCTCAAGGCGGTGAGGCAGGATGATGCTGGGAAGTACGTATGCCGGGCGGTGGTCCCCCGAGTTGGAGCTGGAGAAAAGGAAGTGTCCCTCACTGTGAATGGTCCTCCCACTATCTCCAGCACCCAGACCCAGCAAGCCCTCTATGGGGAGAAGGGGCAGATCAAGTGTTTCATCCGCAGCACTCCTCCTCCCGACCGCATTGCCTGGTCGTGGAAGGAGACAGTCTTGGAGTCAGGGACGTCTGGCCGATACACCGTGGAGACGGTGAGCACCGAGGAGGGGGTGATCTCCACCCTCACCATGAGTAACATCGTCCCTGCTGACTTCCAGACCATCTACAACTGCACTGCCTGGAACAGCTTTGGGTCCGACACAGAGATCATTACACTGAAGGAACAAGAGTCCCTCCGATTGGCTGTAATCATAGGAGTGGCTGTGGGAGCCTTCCTTGCCCTCATTGTTCTCATGGGCACATTGGGTGCCTTCTGCTGTGCTCGCTTCCAGAGGAAAGATGTTCACCTCGTCATGTCCTCCCTACCCGTCTCCATTGCCTCTTGCCAGAGAGACCTTGCAGGCAAAATGAAAACCGAGAatctcaaaggagtggcttcggcaAAAAACGACATCCGGGTGGAGATTGTTCACAAGGATCACAACGCAGCTCGGGAAACAGAGGAGCATACAGCCATCAAGCAGATAATGATTGAGCGTGGGGAGTTCCAGGCGCAGGAGTCTGTGCTGAAGCAGCTGGAGGTCCTacaagaggaagagaaggagttCCAGCACATTAAGGATCCAACCAATGGCTATTACAGTGTCAATACCTTCAAGGAGCACCATGGCACCCCGACTATGTCAATGACCGCCAACCAGACCAGCGGCGCTGAGGTCAGGAACCCTTTGGCTTCTTCTTCATCCACCATGGGAAAGCAGCGTGTGCCTACGGGCATGTCCTTCACAAACATCTACAACACGCTAGGTGCTGGGCCCAACCGCCTGTACGACTACAGCCAGCGCTTCGTGCTTGGCATGGGCAGCAGCTCTATCGAGTTGTGCGAGCGCGAGTTCCAGCGAGGCTCACTTAGTGACTCCAACTCCTTCATCGACACGCAGTGTGACAGCAGCGTGAGCAGCTACAGCAAGCAGGACGGCTACGTGCAGTTTGACAAGGACAGCAAGGCCTCGGCAGCCTCCTCATCTTCCCACTACTCGCAGTCGTCCTCGCAGAACTCAGACCAGACTCGGCCGCTGCAGAAACGCATGCAGACCCATGTGTAATGGCAGAAGGAGCAATGGCTGGGGGTGGGTTCGGACGGGTTGGGTCGAGGATAGCACCTTTAGACACTTTAAGGAACACTGTCTGACTGGTATACAGTGCTATTTTTTGTTTGGTTTGTACTCTGGTCCACCCGAGGGAGATGATGCAGTATTCCACCTTTGGCAGACGGTGGGCAACtgcggtgtccatattaggacagcctgaAATCCTGCTGAGACTGAGGCTGTCATAATATGGACATTGTACGTACAACTCTTTTTACATGTTACTTGGATTACATGTGGTACACTCTATTCCCCTTGAAACAAGCTTTTCAAACAAAAAAGATCATAACCTTGAGAGCTACAATTGGTGGAAAAAAAGATGACAATCAGAAGTCCACTTCCTAAATGAAAAATGCTCTGCTGTTGTCCCCTATTCTGTTTCAGCTAGTGGACTGCCTCAAAATGCACAGCTGTAGGTATTATTCACACGTCTGTGTCGATAAGTTCCAGAATTGTTTAAAAGTTTATTTTCATTATGGAGGAAGACAAACTCTTGGGCCTATGTTCAGCTGCCCGGTTGGGGTTTGAAGCACAAAGGGGTATTGTTAAAAACCACCCGAGGCATTTCTTGTACGTGCAAAAAAAATATCCTTCGATGGATAATGAAACCTCTGAGGAAATATGGTGTTAGCGGCAGGCAATGTAATAAAGACGAACACTTTGCCAATTGGCTGACCTGCAGGTCTAATAGCCCGACACCTGGACAACTTTAATTCTCAACGGATTATAGATTTTGTCCCTTTTGGTTATCTAGGTAAATTCTATATTTTGCTCCTTTATTTTGGATTTATGGTGATATTTTTGCCTTTTTGATGTATGCCTTGTGAAAGTTCATTACTGAGTCACAGATCATAGATAAATGCATGGAGAAGTGGATGTGTCATACTGTTGTACTACTTCACTTGAGCTGACTTTTCAATTGCTTTGTTCACTCACAAACCATCAGTTCCTGGAACCGTTTTTCTTCTTCTGAAAGGACAGTGTCATATTTACACATCAGAGAAAGGGTCAAGGACCTTATCATCTGTACTTTTCCATTCAATGTGAGACACTTGCAGCCTGATCTTATATGTGTGAGCAGATAGCTGTGGAGCCAAATACAATGTCATCTCTGCCGGAGCTGTTCTAATATTTGTGGCTTGCCATACTTAGCTGATATCGTGTTGTTTACACTGGAGCTCTGTAAATCCAGCATTTTTGTGTACTGTGATTTGACCACTAAATGACGGCGATGAAGATAAAGTAACTTTTTTCTGTCTGTTGCCTCTGTGGTTACAATGACTTGGTGCCCACTGTTTTAAGTTGTCTCTCAAATGGTACTACTCAGTTTGAAGTGACAATTAGGTGGTTCTGTTCAAGAGTAAATACTGAAGGTGGTTAGCAAACAATATAATTAATATTTACTACAGTAGGCCCTAAAACATAGGAACTCGTTGAGAATGTAGGTCGTTTGGAACATAAATGTCTGTAACTTTGAATTCCGCTTTATAGAAAAATAATGATTGCATATTTACATGTGTTTTACTTTTACATATCCCAGTTTGATATTGTCAGTTCGGTTGATCAATCAGTCTGTAACACTGGGGTTTGTGTCTGAGGTCCTACTGTAATAGGACTTcattaaataattaattaaataatAATTGATCAATATAACAATA
>XM_036937675.1
CacaagtgagaaagagagaaagaggaaggggagagcatGGGAGACGCAATTGTAGAGCAACACACTGACGCACTGAGAGTGTGAAcggcagaaagagaaagagagaaagaaagagacagagggagagtgaaacTGTGAGTAAAGCTAGAATGAAGCTGAGCCACCGGCAGCAGGGAAGACTGAAGATTTGATTTTCTGGGAAATAGGAGAGGACATAtaaaaagagagcaggagagaagaCGCACACTCTCTCACTGAGAGAGCAGCAGCTGAAGAAGAGAGCTACAGTGccagcccctcacacacagacagacgcacaaCTCTCTTTATACCTCTGCTACTAACTTTGTCTCGGTGTCACCAACATCTCATAGACGGTAGGCACACGGGAGCAGACTTCTTCCCCCGTTACTTCTCTTTAATGATGATGATCCCTTGGCTGGTTCTGTTCTCTTGGATGGCTGGACTTGGGGCCAGTGCAGTGTTCACCCAGCAGCCCACAgacctggtggtggtggcagGTCAGCCGGTGACCCTGCCCTGCTCCATCCCTGGTTACCACGGCATGGTGCTCTGGCTCAGAGACGGCATGGCCCTTGGGGTCAACAGGGACCTCTCAGGCTACCCACGCTATGACATTGTGGGAGACCACAGCAAGGGAGAATACCACCTCTTGATTCAGAGAACTGAAATGCAGGACGACGCCTTCTTTGAGTGCCAGGCCATCCAGGCAGCTATCAGAACACGCCCCGCCCGACTGACTGTGCTCGTTCCCCCTGATGACCCTGTGATTGTTGGGGCACCCGTGGTGAGCCTAAGGGCCGGCGACCCTCTCAACCTGACGTGCCACGCCGACAATGCCAAGCCTGCTGCCTCCATCATCTGGATTCGCAACGGGCAGGTCCTGAATGGCGCCATGTTCTCTAAGACACTGTTGCGGGATGAGCGAAGGGAGAGTACAGTCAGctcactctacctctctgccTCCAACATCGAGACAGGCCAACAAATCACCTGTCGGGCCTCAAACAAGGCCTTGCCCAATGGGAAAGATGCCATTGTCACCATCGACATCCAACACCTGCCCCTGGTCAACCTATCTGTTGAGCCCCAGCCCATACTGGAGGGCAATCTGGTAAAGTTTCACTGCTCTGCCAAAGCTAACCCACCAGTCATCCACTACAGATGGGCCAAAGGGGGCAGCGTCATCAGACAGGTGTCAGGTGACACCTATGAGGTCATCGTGGACCACTCGTTCTTCACAGAGCCCGTCTCCTGTGAGGTCACCAATGCGCTGGGCAGCACCAACATCAGCAGGAACGTGGATGTCTACTATGGGCCCAGAATGGCTGCTGAGCCACAGTCCCTACAGGTTGACCAGGGATCAGATGCTATCTTCAACTGTGCCTGGACAGGAAACCCCTCCCTCACCATTGTGTGGATGAAACGTGGCTCTGGAGTGGTGCTTAGCAATGACAACATCCTGACGCTCAAGGCGGTGAGGCAGGATGATGCTGGGAAGTACGTATGCCGGGCGGTGGTCCCCCGAGTTGGAGCTGGAGAAAAGGAAGTGTCCCTCACTGTGAATGGTCCTCCCACTATCTCCAGCACCCAGACCCAGCAAGCCCTCTATGGGGAGAAGGGGCAGATCAAGTGTTTCATCCGCAGCACTCCTCCTCCCGACCGCATTGCCTGGTCGTGGAAGGAGACAGTCTTGGAGTCAGGGACGTCTGGCCGATACACCGTGGAGACGGTGAGCACCGAGGAGGGGGTGATCTCCACCCTCACCATGAGTAACATCGTCCCTGCTGACTTCCAGACCATCTACAACTGCACTGCCTGGAACAGCTTTGGGTCCGACACAGAGATCATTACACTGAAGGAACAAGAGTCCCTCCGATTGGCTGTAATCATAGGAGTGGCTGTGGGAGCCTTCCTTGCCCTCATTGTTCTCATGGGCACATTGGGTGCCTTCTGCTGTGCTCGCTTCCAGAGGAATGTTCACCTCGTCATGTCCTCCCTACCCGTCTCCATTGCCTCTTGCCAGAGAGACCTTGCAGGCAAAATGAAAACCGAGAatctcaaaggagtggcttcggcaAAAAACGACATCCGGGTGGAGATTGTTCACAAGGATCACAACGCAGCTCGGGAAACAGAGGAGCATACAGCCATCAAGCAGATAATGATTGAGCGTGGGGAGTTCCAGGCGCAGGAGTCTGTGCTGAAGCAGCTGGAGGTCCTacaagaggaagagaaggagttCCAGCACATTAAGGATCCAACCAATGGCTATTACAGTGTCAATACCTTCAAGGAGCACCATGGCACCCCGACTATGTCAATGACCGCCAACCAGACCAGCGGCGCTGAGGTCAGGAACCCTTTGGCTTCTTCTTCATCCACCATGGGAAAGCAGCGTGTGCCTACGGGCATGTCCTTCACAAACATCTACAACACGCTAGGTGCTGGGCCCAACCGCCTGTACGACTACAGCCAGCGCTTCGTGCTTGGCATGGGCAGCAGCTCTATCGAGTTGTGCGAGCGCGAGTTCCAGCGAGGCTCACTTAGTGACTCCAACTCCTTCATCGACACGCAGTGTGACAGCAGCGTGAGCAGCTACAGCAAGCAGGACGGCTACGTGCAGTTTGACAAGGACAGCAAGGCCTCGGCAGCCTCCTCATCTTCCCACTACTCGCAGTCGTCCTCGCAGAACTCAGACCAGACTCGGCCGCTGCAGAAACGCATGCAGACCCATGTGTAATGGCAGAAGGAGCAATGGCTGGGGGTGGGTTCGGACGGGTTGGGTCGAGGATAGCACCTTTAGACACTTTAAGGAACACTGTCTGACTGGTATACAGTGCTATTTTTTGTTTGGTTTGTACTCTGGTCCACCCGAGGGAGATGATGCAGTATTCCACCTTTGGCAGACGGTGGGCAACtgcggtgtccatattaggacagcctgaAATCCTGCTGAGACTGAGGCTGTCATAATATGGACATTGTACGTACAACTCTTTTTACATGTTACTTGGATTACATGTGGTACACTCTATTCCCCTTGAAACAAGCTTTTCAAACAAAAAAGATCATAACCTTGAGAGCTACAATTGGTGGAAAAAAAGATGACAATCAGAAGTCCACTTCCTAAATGAAAAATGCTCTGCTGTTGTCCCCTATTCTGTTTCAGCTAGTGGACTGCCTCAAAATGCACAGCTGTAGGTATTATTCACACGTCTGTGTCGATAAGTTCCAGAATTGTTTAAAAGTTTATTTTCATTATGGAGGAAGACAAACTCTTGGGCCTATGTTCAGCTGCCCGGTTGGGGTTTGAAGCACAAAGGGGTATTGTTAAAAACCACCCGAGGCATTTCTTGTACGTGCAAAAAAAATATCCTTCGATGGATAATGAAACCTCTGAGGAAATATGGTGTTAGCGGCAGGCAATGTAATAAAGACGAACACTTTGCCAATTGGCTGACCTGCAGGTCTAATAGCCCGACACCTGGACAACTTTAATTCTCAACGGATTATAGATTTTGTCCCTTTTGGTTATCTAGGTAAATTCTATATTTTGCTCCTTTATTTTGGATTTATGGTGATATTTTTGCCTTTTTGATGTATGCCTTGTGAAAGTTCATTACTGAGTCACAGATCATAGATAAATGCATGGAGAAGTGGATGTGTCATACTGTTGTACTACTTCACTTGAGCTGACTTTTCAATTGCTTTGTTCACTCACAAACCATCAGTTCCTGGAACCGTTTTTCTTCTTCTGAAAGGACAGTGTCATATTTACACATCAGAGAAAGGGTCAAGGACCTTATCATCTGTACTTTTCCATTCAATGTGAGACACTTGCAGCCTGATCTTATATGTGTGAGCAGATAGCTGTGGAGCCAAATACAATGTCATCTCTGCCGGAGCTGTTCTAATATTTGTGGCTTGCCATACTTAGCTGATATCGTGTTGTTTACACTGGAGCTCTGTAAATCCAGCATTTTTGTGTACTGTGATTTGACCACTAAATGACGGCGATGAAGATAAAGTAACTTTTTTCTGTCTGTTGCCTCTGTGGTTACAATGACTTGGTGCCCACTGTTTTAAGTTGTCTCTCAAATGGTACTACTCAGTTTGAAGTGACAATTAGGTGGTTCTGTTCAAGAGTAAATACTGAAGGTGGTTAGCAAACAATATAATTAATATTTACTACAGTAGGCCCTAAAACATAGGAACTCGTTGAGAATGTAGGTCGTTTGGAACATAAATGTCTGTAACTTTGAATTCCGCTTTATAGAAAAATAATGATTGCATATTTACATGTGTTTTACTTTTACATATCCCAGTTTGATATTGTCAGTTCGGTTGATCAATCAGTCTGTAACACTGGGGTTTGTGTCTGAGGTCCTACTGTAATAGGACTTcattaaataattaattaaataatAATTGATCAATATAACAATA

Function

NR:

description
PREDICTED: kin of IRRE-like protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937674.1 False 4473 mRNA 0.49 16 48281750 48582700
XM_036937675.1 True 4470 mRNA 0.49 16 48281750 48582700

Neighbor

gene id symbol gene type direction distance location
LOC110537708 LOC106567614 coding upstream 290294 47988095 ~ 47991456 (+)
LOC110537707 NA coding upstream 305884 47952857 ~ 47975866 (+)
LOC110537705 LOC106567550 coding upstream 399435 47869876 ~ 47882315 (+)
LOC110537704 LOC106567551 coding upstream 449865 47815907 ~ 47831885 (+)
LOC110538904 rcc1l coding upstream 1968789 46296238 ~ 46312961 (+)
LOC110537709 LOC106567546 coding downstream 198587 48781287 ~ 48905279 (+)
LOC110537710 LOC106567545 coding downstream 340204 48922904 ~ 49098526 (+)
LOC110537711 LOC106567544 coding downstream 529628 49112328 ~ 49141086 (+)
LOC110537712 LOC106567543 coding downstream 584849 49167549 ~ 49209751 (+)
LOC110537713 LOC106567542 coding downstream 679442 49262142 ~ 49300347 (+)
G1080608 NA non-coding upstream 81648 48199877 ~ 48200102 (+)
G1080603 NA non-coding upstream 84245 48197238 ~ 48197505 (+)
G1080595 NA non-coding upstream 90256 48191274 ~ 48191494 (+)
G1080460 NA non-coding upstream 178362 48102991 ~ 48103388 (+)
G1080445 NA non-coding upstream 187884 48087824 ~ 48093866 (+)
G1080878 NA non-coding downstream 7306 48590006 ~ 48652571 (+)
G1081229 NA non-coding downstream 74289 48656989 ~ 48657287 (+)
G1081257 NA non-coding downstream 97193 48679893 ~ 48680176 (+)
G1081284 NA non-coding downstream 128950 48711650 ~ 48711857 (+)
G1081315 NA non-coding downstream 136800 48719500 ~ 48719749 (+)
G1077322 NA other upstream 2273141 46004151 ~ 46008609 (+)
nrgna NA other upstream 2361489 45900621 ~ 45920265 (+)
G1077158 NA other upstream 2667985 45611545 ~ 45613765 (+)
G1075958 NA other upstream 3806084 44473748 ~ 44475666 (+)
G1075963 NA other upstream 3829810 44451306 ~ 44451940 (+)
G1081353 NA other downstream 164255 48746955 ~ 48747499 (+)
G1082266 NA other downstream 1096323 49679023 ~ 49680804 (+)
G1086237 LOC106567502 other downstream 4066904 52649604 ~ 52657495 (+)
G1087914 NA other downstream 5526990 54109690 ~ 54148962 (+)

Expression


Co-expression Network