LOC110539152 (csn6)


Basic Information

Item Value
gene id LOC110539152
gene name csn6
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 58513225 ~ 58526183 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021626113.2
CAGCTCCAGTGTTATGGCGTCTGGGGTCACCGGCAGTGTCTCTGTTGCCTTGCATCCTCTAGTCATCCTCAACATCTCAGACCACTGGATTCGTATCCGCTCCCAGGAGGGGCGGCCCATGCAGGTGATTGGCGCCCTAATCGGGAAGCAGGAGGGTAGAAACATTGAGGTGATGAACTCCTTTGAGCTGCTTCATCAGTTGGTAGATGACCGAGCACACATTGACAAGGAGTACTACTACACCAAGGAGGAGCAATTCAAACAGGTTTTCAAGGACATGGAATTCCTGGGCTGGTATACCACAGGCGGTCCTTGTGACCAATCAGACATCCACATTCACAAGCAGgTGTGTGAGATCATTGAGAGTCCTCTGTTCCTCAAGCTCAAcccaatgaccaaacacacagatctCCCTGTCAACGTGTACGAGTCTGTCATCGACATCATCAACGGAGAGGCAACCATGTTGTTTGCTGAGCTGGGGTACACTCTGGCCACAGAAGAGGCGGAGCGAATCGGAGTGGACCACGTGGCTCGCATGACAGCCACTGGCACAGGGGAGAATTCAACAGtggcagaacatcTCATAGCCCAACACAGTGCAATTAAGATGCTCCACAGCAGGGTGAAAGTCATCCTGGAATACGTCAAAGCTGTGGAAGCAGGAGAGGTGCCATTTAACCACGAGATCCTCAGAGAAGCCAATGCTTTGTGCCATAGACTGCCTGTTCTCAGCACCATCAAATTCAAGACCGACTTCTACGATCAATGCAATGACGTGGGCCTCATGGCTTACCTAGATACCATCACCAAGACCTGCAACAGCATGAACCAGTTCATCAACAAGTTCAACGTCTTGTACGACAGACAGGGCATCGGCCGGAGGATGAGAGGACTGTTCttttgagcgagagagagagagcgggagggagggaggggggggcatGAAAGAAGATGTCACACGAACTGCAAATGTTCATTTGCTTGTCTGTATTTTGTTAAGTTGTCTCATCGAACCAGTTTACTGTTTTCAAAGGTAGCAAATGCTAGAAGTGTCTCAGACCACTTGTCTATACCATAAAATCACACAAACAAACTTCTCACTCGCAGTTTAAGGTTGGTGACTATTCACATTAACGAATCCATGTACACGAACAGAAATCACATTTTTTgctttgttttgttccatgtttcTGTAAGTAATAAATAATCTGCAGATTTTTCGTGGGACTTTGATTCCTGTTTATCACAAAAATaaacgtggatcagaaaaccagtcagtatctagtgtgaccaccatttgcctcatgcagcgcaacatctTTTGTATAGAGTTGATTGTGGAGCGTTGTCCCACTTTTCTTcagtggctgtgcgaagttgctgggtattggcggaaactggaacaCACTGGTACACATCGATTCAGAGCATCCTaaacatgcttaatgggtgacGTCTGgcgagtatgcaggccatagaagaactgggacaatttcagcttctaggaattgtgtgcagatccttgcggaacatgaggtgatggcagcggatgaacggcacgacaatgggcctcaggatctcgtcacggtatcccTGTGCTTTCAAATTGCTATTgataatgcaattgtgttcgttgtccgtagcttttgCCATAACCCCACAATGTTGACATGAGCAAACCGCTCATCCGCACAGCCATCTGCCCAGTAGAGTTGAAacggattcatccatgaagagcacacttttccAATGTGCTTGTGGCCATTGATGGtaaacatttgcccactgaagtcagttacgacaccgaactgcagtccggtcaagaccctggtgagaacGAAGAGCacccagatgagcttccctgcgattgtttctgaccgtttgtgcagaaatcttcagttgtgcaaacccacagtttcatcagttgtccttGTGGCTGGTCTTAgaagatcccgcaggtgaagaagctggacgtggaggtcctgggctggtacGGTTACACGTAGTCTGGGGTAGTGAGGCCAGTtgaaattctctaaaatgaagttggaggtggcttatggtagagaagttAATAACATTATCTGGTGGACAtccttgcagtcagcatgccaattgcacgctccttcaaaacttgagatcTGTGGCATTATGATGTGACAAACACCCAACGGCTAAGACTTTTAGAGTTGAGATCCTAATGTATAATAGCTATTTGGCAGGTGTTTTATctaaagcgacttacagtagtgctTCCATTTCTGGCGTGGACAGGCGTACACTGGTATCTGAAACAGTTACGCAAGAGCCCTGTTTATATCTGGGCAAACATGCGTCCTTGGACttatccacattctgattgtgctgGTCGTAAATTGTCTCATCTGTCTGCATTTTGTCCAGATATCCTGTCCCCTCCCCTGTATGCAAATTATTTGACATTGATGACATTTACAGGTGATGCAATCAAGTTAAGTCACCTGTAGAGGGTGGGATAATTATGGTTTAAATTTCCAGGTCCCTCTACACTTGTAAGATATCCAGACAATGCTTGTCTGATGACATCCAGAGTTTTAAGGGAGCCTGTAGTCAAGTAGATACAGATCCTTCAGAGAGTATTCCctttgactttatccacattttgttgttacagcttgaatttaaaaggGATTGAATTGAGATTGTTTAACGACACACAATACTTCATGTCAAACTGAAATtatggttttagaaatgtttacaaataaattaaatca

Function

symbol description
csn6 Predicted to enable isopeptidase activity. Involved in female germ-line stem cell population maintenance; gamete generation; and protein stabilization. Predicted to be part of COP9 signalosome. Is expressed in several structures, including adult head; anterior endoderm; anterior endoderm anlage; embryonic/larval midgut; and extended germ band embryo. Orthologous to human COPS6 (COP9 signalosome subunit 6).

NR:

description
COP9 signalosome complex subunit 6-like

GO: NA

KEGG:

id description
K12179 COPS6, CSN6; COP9 signalosome complex subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021626113.2 True 2759 mRNA 0.46 9 58513225 58526183

Neighbor

gene id symbol gene type direction distance location
LOC110537849 hand1 coding downstream 222555 58288963 ~ 58290670 (-)
LOC110537845 vkorc1l1 coding downstream 295256 58199388 ~ 58217969 (-)
LOC110538911 NA coding downstream 867279 57640129 ~ 57645946 (-)
LOC110537836 LOC106567402 coding downstream 1108234 57389613 ~ 57404991 (-)
LOC100136198 LOC100136198 coding downstream 1134113 57366383 ~ 57379112 (-)
LOC118937820 LOC106600617 coding upstream 115398 58641581 ~ 58658331 (-)
LOC118936505 atp8a1 coding upstream 151418 58677601 ~ 58687102 (-)
LOC110537866 LOC106600637 coding upstream 299609 58825792 ~ 58833632 (-)
pitpnbl LOC107739385 coding upstream 617969 59144152 ~ 59187749 (-)
asphd1 asphd1 coding upstream 688403 59214586 ~ 59280577 (-)
G1093329 NA non-coding downstream 5766 58507138 ~ 58507459 (-)
G1093287 NA non-coding downstream 21308 58419752 ~ 58491917 (-)
G1093314 NA non-coding downstream 26903 58485512 ~ 58486322 (-)
G1093286 NA non-coding downstream 32187 58412971 ~ 58481038 (-)
G1093301 NA non-coding downstream 62448 58450363 ~ 58450777 (-)
G1093495 NA non-coding upstream 95029 58621212 ~ 58621664 (-)
G1093499 NA non-coding upstream 105942 58632125 ~ 58632342 (-)
G1093501 NA non-coding upstream 108056 58634239 ~ 58634474 (-)
G1093511 NA non-coding upstream 122524 58648707 ~ 58648918 (-)
G1093538 NA non-coding upstream 144232 58670415 ~ 58670867 (-)
G1092523 NA other downstream 1155951 57291444 ~ 57357274 (-)
G1092205 LOC106567410 other downstream 1654078 56857338 ~ 56859147 (-)
LOC110537819 LOC106567417 other downstream 2220608 56283753 ~ 56378107 (-)
G1090502 NA other downstream 2450518 56062430 ~ 56062707 (-)
G1087093 NA other downstream 5380350 53131805 ~ 53132875 (-)
G1094699 NA other upstream 982415 59508598 ~ 59539380 (-)
G1094783 NA other upstream 1174285 59700468 ~ 59702147 (-)
natd1 natd1 other upstream 1442085 59968254 ~ 59971543 (-)
snrnp70 LOC106583923 other upstream 1812691 60336697 ~ 60349405 (-)

Expression


Co-expression Network