amdhd2 (amdhd2)


Basic Information

Item Value
gene id amdhd2
gene name amdhd2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 59586461 ~ 59596187 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021624330.2
CCGGATGCTTCAGATTTATACATCCGCTAAAACGTCATTGTTCTCTCTTCCGCGAGTCCGTTCGTTGTTTTGATCAGCTGACTGCAGCATTCTCACATGATTCCATCCGTCTACCGTTGTTGGAATTCTCACTGACTGCGATTTGACTGTCTTCTATGGGAGCGAGTCTTTCTGAAGTGACTACACTTCAGGAGAGGTGTCATAGAGGTGACATAGCGTCTTGTGGAAGATGCCTACCAATAAGTCTGTGTCGAAGGCGCCGATCACCCAGTTCGTCAACTGCAGGATACTAAGAGATCACAAGCTGCAGCGAGAGGATCTGTGGGTGCGGGAAGGGCGGATCCTAGACCCAGAGAAGTTGTTCTTTGATGAGGAAGGCTACGCAGATCAACGTGTTGACTGTGAAGGCCTCATCATCGCTCCTGGGTTCATTGACGTTCAGATCAATGGAGGATATGGCATTGACTTCTCGCAAGCAACCAGTAATGTCAGAGGAGGTGTGGCCCTAGTAGCCAAGAAAATCTTGGAGCATGGTGTCACCTCTTttttacccaccctagtcacctCCCCTCCAAACATCTACCACAAGGTCTTGTCTGAGGTTAAAGTTCacagtggaggagtggagggagctGGAGTTCTGGgCTGTCATCTAGAAGGTCCATTCATCAGTTTAGAGAAGAAGGGAGCCCACCCGGAGCAGTACCTGCGCTCCTTCCAGTCGGGCGGCATGTTGGACCTGATTGAGACCTACGGGACCCTTGATAACGTTGCCATGGTGACGTTGGCCCCCGAGCTACCCAACAGTGAGAAGGTGGTTAGAGAGCTGGCTCAGAGGGGAATCACTGTTTCTCTAGGACACTCTGTAGCCAACCTGTCCCAAGCTGAGGAGGCTGTGCAGAACGGAGCTTCATTCATCACACATCTCTTCAATGCTATGCTGCCTTTTCACCATCGAGACCCGGGCATTGTGGGTCTCCTCACCAGCGACCAGGTTCCCCAGGACCGGACGGTCTTCTACGGAATGATTGCTGATGGCATCCACACCAACTCTGCCGCCCTGCGTATCGCCCACCGAGCACACCCTACAGGTCTAGTGTTGGTGACTGATGCCATCACAGCGATGGGTCTACCTCCGGGCCGCCACACCTTGGGTCAGCAAGTCATTGAGATCCAGGGGCTCCATGCTTATGTAGCAGGCACCAAGACGCTCAGTGGCAGTATAGCCACAATGGACATGTGTGTCAGGCACTTCAAACAGGCttcagGCTGCAGTGTGGAGCAAGCCCTGGAGGCAGCGTcactccacccggcacagctccTGGGCATCACCCGTTGTAAAGGCACCCTGGACTATGGGGCAGACGcagATCTCGTTCTGCTCGATGATGCTATCAACGTCAGAGCCACCTACATCGCAGGCCAGGAAGTGTGGAGGAAATGACATCATAATAATCAGTCCCCCACCGCTGCCCCACCCGCCCACGTGGACCAAATGggcatgtcccaaatggcatcctatttcctaaatagtgcactacttttgaccagaacagagcatcataaagggaatagggtgccatttgggacacatcaatGCCTGGCTGCATTGTGCTGGACACTTATCTCAGACCATAGATGGCACCACTCTATAAGAAGAATTTTGGATGTAGCACAAAGAAGTACTCTATGTAGGGTGCTATTTGAGCTGCACCCTGGTAAAATGGAGCCACTTGTAAAATGCTACAGTATAGAATTCAATAGTTTTGTGCTATATTTTTATTGACATTTTGCATTAAGACACTTAACACAACATATACTGCATTGAAATTATTTTAATAATCTGTTTGATACATGGGAACATAGCACTGGGGTAACGCAGTTTCTCTGGACCCCCGCAGGGTTAGATCCCTCccgaaaataaaacaaaatcttAAGTGTCAGCCAGACAGCCACTCATAAAGTATAGACTACCGATcattgtccatggtgctgaaattgtGACATATCTATGCAGCTGCATGCATATCGAATCGATGATAGGATTTCTGTGGTGCCAGGGCATGTAAAAGCTTTGCTTTAGCTAATGGATCAATGTTTATTGCTAGGCCTATTTGGTCATCATTTTCTCATGTTTAGCCTAACATTTCACAAAGCTATACACGGTGTTGCAATGCTGACATTTTTTACTGCTGGCTGATGGCAATAATGTAATTACTTGTTAAGTAATTCAAGTTGTAAATTCAGATTGCAGAGTGTAAAATGTATTTGCGATGCAACAGCATACTAATCAGCTACCAattgatttttaaaaatatattgtaaAACTGTCCAGTATAGGCTACCGGAACCTGCATGACATGAGCTGTTCTCGATCTCTCCCAGCTTGGATAGAAAGTTGTTATGCATAAAACTAGTCtattaaagggataatccaccccaATAAATAAAATCATAAAACTCCTGTCAA

Function

symbol description
amdhd2 Predicted to enable N-acetylglucosamine-6-phosphate deacetylase activity. Predicted to be involved in N-acetylglucosamine catabolic process. Predicted to act upstream of or within N-acetylglucosamine metabolic process and carbohydrate metabolic process. Is expressed in blood vessel; immature eye; neural crest; retina; and yolk syncytial layer. Orthologous to human AMDHD2 (amidohydrolase domain containing 2).

NR:

description
N-acetylglucosamine-6-phosphate deacetylase

GO: NA

KEGG:

id description
K01443 nagA, AMDHD2; N-acetylglucosamine-6-phosphate deacetylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021624330.2 True 2470 mRNA 0.48 12 59586461 59596187

Neighbor

gene id symbol gene type direction distance location
LOC118936462 LOC106600673 coding downstream 11898 59571144 ~ 59574563 (-)
LOC110537880 LOC106600673 coding downstream 17150 59567856 ~ 59569311 (-)
asphd1 asphd1 coding downstream 305884 59214586 ~ 59280577 (-)
pitpnbl LOC107739385 coding downstream 398712 59144152 ~ 59187749 (-)
LOC110537866 LOC106600637 coding downstream 752829 58825792 ~ 58833632 (-)
LOC118937689 LOC106567469 coding upstream 112038 59708225 ~ 59710379 (-)
mapk8ip3 mapk8ip3 coding upstream 173545 59769732 ~ 59838516 (-)
jpt2 hn1l coding upstream 262028 59858215 ~ 59881634 (-)
dhrs7b dhrs7b coding upstream 358836 59955023 ~ 59963331 (-)
tmem11 LOC106600685 coding upstream 368836 59965023 ~ 59967584 (-)
G1094717 NA non-coding downstream 20130 59565359 ~ 59566331 (-)
G1094716 NA non-coding downstream 21437 59564378 ~ 59565024 (-)
G1094704 NA non-coding downstream 42819 59543438 ~ 59543642 (-)
G1094699 NA non-coding downstream 48122 59508598 ~ 59539380 (-)
G1094691 LOC106600647 non-coding downstream 84136 59491622 ~ 59502325 (-)
G1094797 NA non-coding upstream 90712 59686899 ~ 59687137 (-)
G1094798 NA non-coding upstream 91018 59687205 ~ 59687431 (-)
G1094800 NA non-coding upstream 106429 59702616 ~ 59702893 (-)
G1094802 NA non-coding upstream 108625 59704812 ~ 59705861 (-)
G1092523 NA other downstream 2229187 57291444 ~ 57357274 (-)
G1092205 LOC106567410 other downstream 2727314 56857338 ~ 56859147 (-)
LOC110537819 LOC106567417 other downstream 3293844 56283753 ~ 56378107 (-)
G1094783 NA other upstream 104281 59700468 ~ 59702147 (-)
natd1 natd1 other upstream 372081 59968254 ~ 59971543 (-)
snrnp70 LOC106583923 other upstream 742687 60336697 ~ 60349405 (-)
G1097645 NA other upstream 1442529 61038716 ~ 61324712 (-)
LOC110539101 NA other upstream 1547925 61144112 ~ 61244327 (-)

Expression


Co-expression Network