LOC110538173 (LOC106607273)


Basic Information

Item Value
gene id LOC110538173
gene name LOC106607273
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 69823215 ~ 69875030 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036938230.1
CAGCGTCTGAAGCGCTCCCTCTCCTTTAAGTTCCTGACGTGTTGATACCTGTTGTGAATGTTCTCCtgatgctctcctctctccctccctgcagcTCCAGCGTCTGAAGCGCTCCCTCTCCTTTAAGTTCCTGACGTGTTGATACCTGTTGTGAATGTTCTCCtgatgctctcctctctccctccctgcagcTCCAGCGTCTGAAGCGCTCCCTCTCCTTTAAGTTCCTGACGTGTTGATACCTGTTGTGAATGTTCTCCtgatgctctcctctctccctccctgcagcTCCAGCGTCTGAAGCGCTCCCTCTCCTTTAAGACCCTGATGCGCAGTAAGAGCGTGGAGAACTTCTTCCAGAGGTCCTACAGTGACGCCCGTCTCCCCCCAGACTTCATCACCGACCCGCCACCCCCCTCCCCGCCCCCTGGCTCTCCCCTCGCCAGTGAATGCTCACCCTCCCGCTCTCCGTCACTCAGCCCCaacccctccctctgctcccACTCCCCGTCTCTAAGcccctccccctcgctctcttccAAGGCCCCGCCCCCAACCCGCCCACTGACGCAGGTGAACCACTGCTTCCAGGAGCACATTTTCCGCAAGCCCACCCACTGCCAGCTCTGCAAGCACCTGATCGTGGgtaacTCTAAACAGGGTCTTCGGTGTAAAACCTGTAAGATGGGTGCTCACCTGTGGTGCACCTCAGAGTTGTCCCAGCAGCCCTGCAATGGAAAGtctgggGTCGGGGCCTTCAAGCGGAACTTCAGCTCTCCCATGCTGGTTAACGAACAGCTGGCTGTCGTCAAGGAGGTGCAGCCCACCCAAGGGGCAGGCCGGGGGCGTGGGGTGGACCCTATTTACGCAGCCCTGCGCTATGGGACGTCCCTGGCACAGATGAGCCGCTCCAGTTTTGGGAGCGTGTCCGAGTCGCCCACGCACAGCCAGggtgaaggaggagaggagggggagcagaggcagtacagcatggaggaggagatgccaCAGGAGACAGGGGATCTGCCTCCGTGTGAAAACGAGAAGGCTGAACCTGAGGGTGGGGACAGCGAGCAGCTCCAGGAGCCTGTAGAGGAAACCAGTgtgaagGTTCCCAGGCGTATTGAGGTTCACTCCATCCACACGTATGTAGCGCTCTTCAAGTTCCTGCCTCAGGAGCACAACGACCTCGGACTAGAgcCTGGTGATCGGGTGCTGGTCACTGATGATTCTAATGAAGAGTGGTGGAAGGGAAAGAGTGGAGACAAGGTGGGCTTCTTCCCTGCTAACTTCGTTCAGAGGGTGCGCCCAGGGGAGAGGGTGTGGAGGGTCACCCAGCCTGTCCCTGCCAGCCGAGGGATGGGACACATGCCAGTGAAGGAGGATCAGatCTGTGTGGGGAAGAGTGAGGACAATGAGGGTTTCCTGAAGCTGAGCAGTGGGAAGAAGAGAGGACTGGTCCCTGCTGAATCCATTGAGGAGATCTAACCTCTGTCTCAACACCagcccccagtctctctctgtccagcaccCGGTAACCTCCTTCACACACCCCTTTAAGGCCTGAGGAGGACCAGCCAGTCCGGAGGTCCTCCAACACCACCATCATGAGGCCCACCTCCCTACTAAACTGAGTGGGGAGCGTTGACAGTTCAGCTTGTGAATTCCTGGTGATGTGGAGGATGCCCCAGCCTTGTCCTTGCTGACCTTGTCTCCTCCACCCCAATGTAGCTGACAACCCAGACATGAAAGGGTTGGTTTCCCTTCCACAGTGGGTTGGCCTAGGTGTTGTGGAGGACTATCTAAGCCCCCAATGCCCCATGTTTTCCTGCTGTAATGTAACTTTGTGTATTAGTGAACTGGGTTTATCTGTAGTCCAGACCACAGGGGTACGAGTTTTAGGACTGAAGGACTGGCTGCTGTGGACTCCAGTAACTTCCCTCAGGATGGAAGGAACTTTGAGACTATTTTCTGTCTGGTgagtctggtctctctgtgtgtgatttgACCAGTTCTTTTTCACTGTCCTCTGTGGCTGGATATCATGAGGCTGAAGAATGCAGGATTAAGGCCGTCGCATAATATCCAGTCGAAAGGTGGCGCTCCGTTTCGCGCATATATAATGACTAAAACGTGTGCTGTTTCTGTCGGTTTTGGTGTTTGGCAGGGTTTTTTTTGTCTGTTCGCTCAAACAACATTTTGTATTGGGGCAAGTTGAAGTTCGGTAGCCGACGTCTACGCCCTTTCGCCTGTAATTGGTCAACTGTAGTGTTTTCAAATGAAGGTCTTCAAGGGCGTATGAGAGCACAGTCGTGCACGCACACCTAGCCGAGTTCTGCTAGGCGCAAACAGAACCTAGTATTAGTATACGTTACCGTAGTCAGGTACTTAGTCAGgagttcctgttcctgttcctggaCACTGCATGGAAGAAAACATTTGTTCTTTCTCTGATGAACTAGAACAAGCGTCACACTCCTGATGACATCATCACAGGTGGACGCCTACTATGATCATAGTAATTAATTTACGAGTTGACCGTGAAGGAGATAATTGCATGCTGAAGGATGTACTTGTTTGAATGCCCGGTGTCAGTGAGATGTTCAGGAGACTGGTGATGGTTGTAGGTGTAGGTGCTTGCATTTTCTCTCATCCTTTCGTTTggtccaccttctctctctctctctttctttctctctttcactatctctctttctctcgtctctctctccttccatctttcTCAGCTATACATTGGTCCCTTGGCTGGGATTTGACATCATCTTGATTTAGACTGGCACAAAACTTAACTGCTCTGCAAGGACGGATGGGCGGGCAGGCGGGCGACACTGGGCAGAGTACACCCTGGTCAGACCAGACAGCCAGCAGAGGACAGGACAAACTGGGTTTATTTcgacacactctctctcagatCCTGACTCACCGGCTGACTCACTAACGTTCGACCTCGCACTTGACAGGTTCCAGAAGGTCATGGATGTAAGCCCCGTCATTCTATTGTACAGCTGGTGAATCAATCAAACGCTTCAGAAAATCTGTTTTTCTATGTCCTATTTATGAAAAATACAAGCGATTCAATTAGATTTGGGCggtgaatacttacataaataattcaatgtttttttgttcTGAATAGCCTGGACTGTATAAAACATCTATGAATAGAGCCATtgataaaaaaagaaacaa
>TU1256295
ATAGCAGTTGGTAGGTTACTTGCCTCGCAGGGCGGAATAGGACCGTTCTTTGCTGATGCGTAACTAAGGTCCAATCTTTCGAATACCGCCACAGACTACACCCTTTCTGCAGCTCTGAACTGAAATTCCTTTAGACCTGTGATGTGTATTAATTGGATGTAACCCGGTGCATCTCTTGGCGCATGATCCTCAACAGCCTGCCTATTCCCCGCGCGCGTGAATCGTTAAAACGTGGTGAGGTGGTACGCTTTATTTAGCCAATCTCAACGGCTACACTGGGCAGTACTTTTGACTAACTCACATTTGAATGAATTCAGCAGTAACAGTCGGGTTATTCTGGAACCCAGACCACATACAGCCGACTGTCTCATTTCATCCCGTGAAGAGACCGATGATGACGGAGAACAGCGAGATGGAGACCGAGACGCAGCTCCAACGCTCGCCAAGCAACATGTCCATCACACCGGTGTCCAAGcTCCAGCGTCTGAAGCGCTCCCTCTCCTTTAAGACCCTGATGCGCAGTAAGAGCGTGGAGAACTTCTTCCAGAGGTCCTACAGTGACGCCCGTCTCCCCCCAGACTTCATCACCGACCCGCCACCCCC

Function

NR:

description
SH3 and cysteine-rich domain-containing protein 2-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036938230.1 False 3210 mRNA 0.52 10 69854780 69875030
TU1256295 True 603 TUCP 0.52 2 69823215 69855195

Neighbor

gene id symbol gene type direction distance location
LOC110538170 LOC106601006 coding upstream 34963 69799674 ~ 69819817 (+)
LOC110486238 LOC106607270 coding upstream 119475 69730257 ~ 69735305 (+)
LOC110538162 LOC106600999 coding upstream 242525 69610799 ~ 69612255 (+)
LOC110538157 LOC106600994 coding upstream 419503 69402993 ~ 69435277 (+)
LOC110538155 LOC106600992 coding upstream 533262 69315451 ~ 69321518 (+)
LOC110538175 LOC106601009 coding downstream 32391 69907421 ~ 69935378 (+)
LOC110538177 LOC106607277 coding downstream 77392 69952422 ~ 69957520 (+)
LOC110539166 LOC106601013 coding downstream 90476 69965506 ~ 69967488 (+)
LOC110538185 kbrs2 coding downstream 169555 70044585 ~ 70048245 (+)
LOC118937908 NA coding downstream 507139 70382169 ~ 70382221 (+)
G1104856 cdk12 non-coding upstream 66363 69787294 ~ 69788417 (+)
G1104843 NA non-coding upstream 136498 69685230 ~ 69718282 (+)
G1104857 NA non-coding upstream 159575 69683678 ~ 69695205 (+)
G1104859 NA non-coding upstream 164557 69689362 ~ 69690223 (+)
G1104842 NA non-coding downstream 1223 69876253 ~ 69878388 (+)
G1105129 NA non-coding downstream 16188 69891218 ~ 69936515 (+)
G1105148 NA non-coding downstream 41643 69916673 ~ 69917046 (+)
G1104841 NA non-coding downstream 61868 69936898 ~ 69937341 (+)
G1104162 NA other upstream 1322919 68528281 ~ 68531861 (+)
G1104149 LOC106600798 other upstream 1349485 68504041 ~ 68505295 (+)
G1103416 eif1b other upstream 1846303 67987694 ~ 68048717 (+)
LOC110538103 LOC106600823 other upstream 2044717 67793428 ~ 67810071 (+)
G1105194 NA other downstream 147678 70022708 ~ 70048987 (+)
G1105281 NA other downstream 287659 70162689 ~ 70194672 (+)
G1105357 NA other downstream 449928 70324958 ~ 70327126 (+)
G1105393 NA other downstream 495725 70370755 ~ 70371211 (+)
G1105467 LOC106601028 other downstream 737273 70612303 ~ 70633971 (+)
G1105120 NA non-coding downstream 15823 69871018 ~ 69871310 (+)

Expression


Co-expression Network