G1111805 (LOC105030512)


Basic Information

Item Value
gene id G1111805
gene name LOC105030512
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 75418789 ~ 75423163 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1264041
ttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctctgtcccagtctcaggtattttgcagactccatcaggtttggcaagtcggttaggacatctactttgtgcatgacacaagtaattttccatctattgttaacagacagattatttcacttataattcactgcatcacaattccagtgggtcagaagtttgtgcatttaaacagcttggaaaattccagaaaatgatgtcatggctttagaagcttctgataggctaattgacataatttgagtcaattggaggtgtacttgtggatctatttcaaggcctaccttcaaactcagtgactctttgcttgacgtcatgggaaaatcaaaagaaatcagcgcaaaaaattgtagacctccactggttcatccctgggagcaatttccaaacgcctgaaggtaccacgttcatctgtacaaacaatagtacgcaaatataaacaccatgggaccacgcagccatcattccgctcaggaaggagatgcgttctgtctcctagagatgaacgtacttttgtgcgaaaagtgcaaatcaatcccagaacaacagcaaaggaccttgtgaagatgctggaggaaacaggcacaaaagtatctatatccacagtaaaacgagtcctatgtcgacataacctgaaaggccgctcagcaaggaagaagccactgctccaaaaccgccatgaaaaagccagactatggtttgcaactgcacatggggacaaagattgtactttttgaagaaatgtcctctggtctgatgaaacaaaaatggaactgtttggccataatgaccgtcgttatgtttggaggaaaaagagggaggcttgcaagccgaagaacaccatcccaaccgtgaagcacgggggtggcagcatcatgttgtgggggtgctttgctgcaggagggactgatgcacttcacgaaaatagatggcatcatgaagaaagaaaattatgtggatatattgaagcaacatcacaagacatcagtcaggaagtaaaagcttggtcgcaaatgggtcttccaaatgaacaatgaccccaagcaaacttacaaagttgtggcaaaatggcttaaggacaacaaagtcaaagtactTTAGTGGAcatcacctgacctcaatcccatagagaatttgtgggcataactgaaaaagtgtgtgcgagcaaggaggcctacaaacctgacacagttacaccagctttgtcaggaggaatgggccaacattctcccaacttattgtgggaagcttgtggaaggctacctgaaatgtttgatccaagttaaacaatttaaaggcaatgctaccaaatactaattgagtgtatgtaaacttctgacccactgggaatgtgatgaaggaattaaaagctgaaataaatcattcgctctactattattctgacatttcacattcttaaaataaagtggtgatcctaactgacctaagacagggaatatttactaggattaaatgtcaggagtttaaatatatttggctaaagtgcatgtaaacttccgacttcaactgtagagttaaaaatgtattcaattttgagtttgcatcccaagaTATTACTTTACATATATCACGGAAGACTGAAATAAACTCAGCAATaaaagatcattcgtaaaaatccaaataacttcacagatcttcattgtaaagggtttaaacactgttacCCGTGCTTATTcgatgaaccataaacaattaatgaacatgcacctgcggaacggtcgttaagacagcAACAGCTTACAGTTGGGAGGCAGTTAAGGTCACAGTTTTGACTTGAAAAACACCAAAGAAAAGATGCCTGGGGTCTATGCTtttctgcatgaacgtgccttaggcatgctgcaaggaggcatgagtactgcagatgtggctagggcaataaattacaatgtccgtactgtgagacgcctaagacagcgctacagggagacaggacggacagctggtcgtcctcgcagtggcagaccacgtgtaacaacacctgcccaggatcggtacatccgaacatcacacctgcgggacaggtacaggatggcaacaacaactgcccgagttacaccaggaacacacaattcctccatcagtgctcagactgtccacaataggctgagagaggctggactgagggcttgtaggcctgttgttaggcacgtcctcaccagacatcaccagcaacaacgtcgcctatgggcacaaacccaccgtcgctggaccagacaggactggcaaaatgtgCTCCTCACTgatgagtcgtggtt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1264041 True 2414 TUCP 0.43 2 75418789 75423163

Neighbor

gene id symbol gene type direction distance location
LOC110538383 LOC106601250 coding upstream 139247 75236926 ~ 75279542 (+)
LOC110538384 LOC106601293 coding upstream 185242 75231002 ~ 75233547 (+)
LOC110538385 LOC106607175 coding upstream 190385 75221851 ~ 75228404 (+)
LOC110538386 LOC106607176 coding upstream 202343 75136261 ~ 75216446 (+)
LOC110538388 LOC106601254 coding upstream 315794 74960037 ~ 75102995 (+)
LOC110538378 LOC106601246 coding downstream 20825 75443988 ~ 75463480 (+)
LOC110538377 f10a1 coding downstream 87836 75510999 ~ 75517780 (+)
LOC110538373 LOC106601242 coding downstream 170588 75593751 ~ 75608737 (+)
LOC110538372 LOC106601241 coding downstream 196175 75619338 ~ 75623953 (+)
LOC110538366 LOC106607160 coding downstream 215091 75638254 ~ 75649590 (+)
G1111798 NA non-coding upstream 4723 75393498 ~ 75414066 (+)
G1111312 LOC106601248 non-coding upstream 124126 75288131 ~ 75294663 (+)
G1111307 NA non-coding upstream 134330 75284139 ~ 75284459 (+)
G1111306 NA non-coding upstream 134684 75283884 ~ 75284105 (+)
G1111250 NA non-coding upstream 137512 75279802 ~ 75281277 (+)
G1111871 NA non-coding downstream 111577 75534740 ~ 75536458 (+)
G1111872 NA non-coding downstream 115122 75538285 ~ 75538518 (+)
G1111874 NA non-coding downstream 116445 75539608 ~ 75539812 (+)
G1111890 NA non-coding downstream 140253 75563416 ~ 75563759 (+)
G1111911 NA non-coding downstream 163978 75587141 ~ 75587364 (+)
G1111126 LOC106578813 other upstream 370433 74960266 ~ 75048356 (+)
G1109786 NA other upstream 1571995 73846255 ~ 73846794 (+)
G1109778 NA other upstream 1584183 73833643 ~ 73834606 (+)
LOC110538462 rpc11 other upstream 2032922 73384755 ~ 73386199 (+)
G1109505 NA other upstream 2112635 73305425 ~ 73306154 (+)
G1111961 NA other downstream 321976 75745139 ~ 75745620 (+)
G1111970 LOC106601177 other downstream 327707 75750870 ~ 75753593 (+)
LOC110538360 LOC104946491 other downstream 361187 75774976 ~ 75790602 (+)
LOC110538356 LOC106607146 other downstream 425442 75838066 ~ 75853712 (+)
G1111968 LOC106601158 other downstream 472449 75895612 ~ 75895873 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G45129 LOC105030512,LOC106584099,LOC106569888,LOC106613431,LOC106573797,LOC106609167 non-coding CM030125.1 CM030125.1 35141422 ~ 35142529 (+)