XLOC_029977 (fam222a)


Basic Information

Item Value
gene id XLOC_029977
gene name fam222a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 19712011 ~ 19752895 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058687
ATGCTGGCCTGTCTGCAGAGGAGGCAGAATCCTGCACCCCAGCACAACCCAGCCgtctgcagcagcagcagcagcaagagTCTTGAGCCAACGCAACACATCAACCGCAAATGTGAGCTGACTGTCCCCATGCCCTCCCCGCGCTACCCCAGCGCAGCAGAGCTGGATGCCTATGCGCAAAAAACAGCCAGCAGCCCCCTGTCCATCAAGATCTTCCCCACCAACATCAGGGTTCCCCAACACAAGCACCTTAACCGGACTGTGAATGGATACGACACCACGGGACAGCGCTACAGCCCCTACCCCCACCTCCACACAGGGGGCTACCAGGGTCTGTTAGCAATCGTCAAagtctcatcatcatcatcctcatcctgCTCATCTTTTGTACCCTCCGCAAAGGGCGTCCTCAAAAACTCAGAGGGCAGGAGGACTAAGTTGTCTCCTGCGCAAATAGCAGTGGCTCCTTATCCACCTCCCAACAGCAGCACTTTAGGTCATTGCCATGGACAGATTGTGTACCACACAGGGCCACCCAAACCACCAGAGGCCACCACTTTATCGGTCCCACCTAACGTCACTGTGGCTGGCTCTGTGATCCCTGTGGCAGGAGGCCGAGGACTGAATCTCCCTCCTCAGTCCAATCTTCCCTCCATCCAGAGCATCATTTACCAGATCAACCAGCACTGCCAAGCCCAGGCTCTGCAGCAGGTGTGTCAGAACGGGACGTCTACGGGACCTCCAAACCCCAGCCCTTCCAAACAGGGCACCACTAACTCCTCAGGGGGGACCTACGTCACTGGTGTGGCTCCACAGGGAAACATGCCCTATTCAGGGACGGTGATACCAGGGCAGAACGGGGAGGTCCTGAAGGCCGGGGTGTATCCCGAAGGTATGGACTATCTGCTGTGGCAGAAACAACAgcatcatcatcagcagcagcaggCAGTTTTGAGGATGTACAGTGGAGGAAGTGGAGGCGGAGGTGCAATCAGCAAGTCGCCAGAAACCTGTGGCCCGGTAGGGTCCATTATGCTTGGAGGGGCGCAGGTGTCCTCTTCCAGGGGTTATCCGATGACGGCCAGTACGAGTGGTGGGGGCGGACTAGAAAAAGTCAGCTCCTCTCCTTTGAACTGTGTTGGGATGCATGGGAACTTTTCTGTCGGCCAGTACTTTGCTCCTCCATGGAACAGTGTTCTGGTGACGCCAGACAGCGACTGCTACAACCCACAAGAGCTGCCAGGAGCTACAACCACAGCTGGACCGGTAACCGGACACAGGGAGCTGGGATTCCCCCATCATCACCAAcaccctcatcatcatcatcaccaccatcaCCAACACCATCATCACCACCACCCACCCATAGACAGCACAGGTGGTCTGTGCTGCAGTTTGCCCAGTAAGAGTCTATGTAATACGTCAGTGTTGAGCAGCAGTCTGCAGTCACTGGAATACCTGATCAATGACATTCATCCCCCCTGCATCAAGGAGCAGATGCTAGGGAAGGGATATGAGACCGTGTCTGTGCCGAGACTTTTGGACCACCAGCATGCGCACATCCGCCTCCCTGTTTACAGATAA

Function

symbol description
fam222a Is expressed in several structures, including margin; nervous system; neural tube; periderm; and tail bud. Orthologous to human FAM222A (family with sequence similarity 222 member A).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050309-42 Is expressed in several structures, including margin; nervous system; neural tube; periderm; and tail bud. Orthologous to human FAM222A (family with sequence similarity 222 member A).

Ensembl:

ensembl_id ENSDARG00000090797

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058687 True 1584 mRNA 0.56 2 19712011 19752895

Neighbor

gene id symbol gene type direction distance location
XLOC_029976 mvk coding upstream 202316 19494198 ~ 19509695 (+)
XLOC_029975 aldh3b2 coding upstream 223877 19477555 ~ 19488134 (+)
XLOC_029974 ube3b coding upstream 239890 19448078 ~ 19472121 (+)
XLOC_029973 myo1ha coding upstream 276028 19413838 ~ 19435983 (+)
XLOC_029972 NA coding upstream 306073 19404532 ~ 19405938 (+)
XLOC_029978 tchp coding downstream 114899 19867794 ~ 19879252 (+)
XLOC_029979 ankrd13a coding downstream 180461 19933356 ~ 19952944 (+)
XLOC_029980 NA coding downstream 208900 19961795 ~ 19965283 (+)
XLOC_029981 sgsm1a coding downstream 277519 20030414 ~ 20093196 (+)
XLOC_029982 BX547941.1 coding downstream 324799 20077694 ~ 20077810 (+)
XLOC_029971 NA non-coding upstream 308633 19400399 ~ 19403378 (+)
XLOC_029966 NA non-coding upstream 632095 19068184 ~ 19079916 (+)
XLOC_029963 NA non-coding upstream 674427 18822811 ~ 19037584 (+)
XLOC_029992 NA non-coding downstream 790005 20542900 ~ 20546489 (+)
XLOC_029996 BX510312.1 non-coding downstream 922038 20674933 ~ 20675050 (+)
XLOC_030005 BX470224.3 non-coding downstream 1505323 21258218 ~ 21259238 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G280443 NA unknown CI01000071 null 905217 ~ 922096 (+)
eurasian perch (Perca fluviatilis) G234152 NA non-coding NC_053135.1 CM020932.1 11336610 ~ 11341839 (-)
bowfin (Amia calva) AMCG00018718 NA coding CM030135.1 CM030135.1 18924508 ~ 18936316 (-)