XLOC_029987 (coro1ca)


Basic Information

Item Value
gene id XLOC_029987
gene name coro1ca
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 20319519 ~ 20419863 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058701
GCGTGCCTTCCGGCGAGTCTCGGACAAGTTGAGTGAGGCAGAGGCATAGGGAACATTCGCGCGATAAGGGACTGCTGCTGGGAAACTAAAGCTGTCTAGTACAAAATTAAAGTCGGGCTTGGATATATTTTGCCTACGACAGCTGAGAAGATATGTTCAAACGGGTTGTACGACAGAGTAAGTTCCGGCATGTGTTCGGCCAGGCGGTGAAGAATGACCAGTGCTATGATGACATCAGGGTGTCCCGGGTCACATGGGACAGCGCGTTCTGTGCAGTTAACCCCAAATTTGTTGCCTTAATTGTGGAAGCCAGCGGAGGCGGAGCGTTCATGGTTTTGCCTCTACACAAgACGGGTCGTATAGACAAGGCCTACCCTACAGTATGTGGTCACACCGGCCCTGTTCTGGACATCGACTGGTGCCCTCATAATGACCAGGTCATCGCTAGTGGATCTGAAGACTGCACCGTCATGGTGTGGCAGATCCCAGAGAACGGGTTGGTGACTTCCATGTCAGAGCCAGTGGTGGTTCTGGAGGGTCATTCAAAAAGAGTGGGAGTTGTTACCTGGCATCCTACTGCACGCAACGTCCTCCTCAGTGCAGGCTGTGATAATATGATCATCATCTGGAACGTGGGGACGGGGGAGTCTATGATCACTCTGGAGGACCATCATCCGGACATCATCTACAGCATCTGCTGGAACCGCAACGGCAGCCTCATCTGCACCGCCTGCAAGGACAAGAAGATCCGCGTCATCGACCCGCGCAAGGAGGAAATCATCGCGGAGAAGGACAAGGCCCATGAGGGAGCGAGACCCATGAGAGCCATTTTCCTGTCTGATGGCAAAGTGTTCACCACTGGCTTCAGCCGCATGAGTGAGAGACAACTCGCCCTATGGGACCCAGAGAACATTGATGAGCCTGTTGCTGTCCACGAGATGGACACCAGTAACGGAGTCCTCCTGCCCTTCTATGATCCCGATACTAATGTGGTCTACCTGTGTGGAAAGGGTGACAGCAGTATTCGTTACTTTGAGATCACAGATGAAGCTCCGTTTGTCCATTACCTCAACACCTTTACCACTAAGGAGCCTCAGAGGGGCATGGGGTACATGCCTAAGAGAGGTCTGGATGTCAACAAGTGCGAGATCGCAAGGTTTTACAAACTGCATGAGAGAAAGTGTGAGCCTATCATCATGACCGTGCCAAGAAAATCGGACTTGTTCCAGGATGATCTTTACCCAGACACGGCAGGTCCTGATGCCCCTCTGGAGGCTGAGGAATGGTTTGAAGGGAAGAATGGAGACCCGGTCCTGATATCCCTGAAGCACGGATACATCCCAGGGAAGAACCGCGACCTCAAAGTAGTCAAGAAGAACATCCTAGACAACAAGATGAGCAAGAACACGGAGAACACCACTCCTGCCCACAAGACTGCCACCTCCACACCATCTATTAAAAGCGAAGCTAAGCTGGAGGAGGTTTTGAAAGAAATCAAATCTCTCCGAGAGCTGGTCAGCAGTCAGGAAAAGAGAATCGGCAAGCTGGAGGAGCAGTTGTCTAAAATGGACATCTAAAGGACCCTGCAGACCCCTCCCCCTTCTCTTCAGGATTTTCCATTGGCCAGGTGGGCGGGACCCGTCACTGCCAATCACCATGACAGCGTTCCGTCTGAAACCTGCCTCGCAAAGACTCCAAACAACATTCCAAAAAATCACCAATTCCTTTCGCAAATCCCCTTTTCCACCTCAGAGCCATTTGGAAAACTAGAAACGCCTTCCGTTTCGCTCCAAAAGTTCACCCGTTTCGCTTCTTACTCCAAATCTTTCCGCAAACCTTGTGTTTTATCTGGTATCCTTGAACAGTCTTAAGCttgttttcttattaaaaaattgtGACCAAAACGTTTCGCAGTTATATGAACTTGATGAGCTCAAAGTTTGAAGTAGCCCATCAGTATTGCAGTTTCCCTCTCGCCCTTCTGAGTTGCCAAATTTATAGAGGATTTTGCCACCTCCCTGACAGTATTTGACCAGCTTTTTTATGTTGTACTGATAAGGGACAAAGCAATATGCAAGGAGGGGAAATCACTggattttgttttcaaatgttaTAGCTGTCTTTCTagagaataaaaataaagattttaatcaAGCCGGCAAACATGTAGAGTCGAAAACGTTTACAAAACTGTACTGGAAAATCATACAAATGTCTCACTGTGCATGAACCCACATTTAAAGATATTAATAGGCcaaataatttaaagtaattcTAGTTTAAAGCCAATGTGTGCTTTTCCTACAGCCTCAGACACTTGCTGGCAAAAAAAAGAGTCAGCTTTTCCCCTACTAATCCATATTGACACATCTGCACTTTTCTTCTGTTTCTTGAATGAATCCAGAAACCTTCAGGTCTCACCACATACCtctaaaatgtttttagtttCTCATAAGCTCAGAGTAACAAAAAAAAAGCCCATGTATATTCTAAAATAGTAGCTTTTTCCAGCTTGATGGCGCTTTTACTCTGACTTTGTTCCAGTCAGATGTCTTTCAGATCTAAAAATGCTGTTTACTTTGCTTTCTCACCCATTCCTCCAAAATCTTGTGCCGTCTTCAACATCCAAACATGCAAACATTTGCATCATAGACCATGACTAAAAGCAAAGTAGTGAGTCACGATGATCGACTTCCTTCCTAATAGGCCTTTTTATGTCTACCGTGCTCTCCTAGCCAAGCAGAACCAATTCTCTCAAGCGGAGCTCATGTTGATGCTTATACAGCTGAGTGCCATGCGTTTGAGGTGAAGAAGCCtggcttttttattgttttgtttggttgTGTTATTGTTCTTGCCAAGAAGAGAGGAAACTGTGATTCTGTTGATCAGATTGCTTTGGCTACATCCTTTCATCAGAACGTTCTCATTTTGTGGTTTTCATGTTCGACGCTTCTACTTGTCTCGTTTCTGTTTGCGTCACTGGCCCAGCGCCTCTTTCACAGGATTTGAAAAGCACCTTCTCTCCTCCCTTGCTTAAAGTCTATAAAGCAGCTTTCTAAAACACTCAGATGACCTAGATGTTTGTGTGAAGCAGTACTGCAAAAAATGTGTCTCTCACTTGGAGTTTGTGTCTTGTTTATAATTTAAGTATCGAACTATTCTTAAAACTCGAAGCAATTCTTTAACTAGTTAAAATGTTGATTTGTTTTCAGAAGTAACAAGtcaaaattaaattagttttgactttaaataaagcaaaataatcttgttggTCTAAAAATAGGATTTTGTTCAacagcagattatttagcttattttaaggaaaaactcacttcatattgacttattaaaaacaaaaaaaaaacatgaagccTTTTCTGGACAAGTTAAACTGTtgatttgttttcagaaataataagtcaaaatgaattaagttttaacttttaaaaagtgaaataatcttgCCAGTGGGGGGTAGCTAAAATAATCAGGTTTAggtctaaaaataaaattaatttaacggcattaatttatttagcttgttttaaggaaaaactcatttcattttgacttgttttatttgaaaacatgaAGCCTTTCTTGACAATGTAAATGTTGATTTGATTTCAGATATGATACAGTTAGTcgaaattaaatgagtttttaacttaaaaaaaaaaaaaaaaaagctaagtcTTTCCAGTAGGAATAGCTAAAATAATCTCGTCTTTgttctaaatttaaattaatttgttcaacggcagattatttagctcgtcttaatgaaaaactcactttattttgatttattaaaaaaaaaaaaaacatgaagtgtAATTTGACCATAAAAATGTtgatttgttttcaaaaataataaatcaaaattatgtgaattttaacttttaaaaaagcaaaataatcttgccaGTGGGGCTAACAGATAATCTTGTTTTTGTTCTGAAATGAGATTCATTTGTTCAacggcagattatttagcttgttttaaggaaaaacttaattcatttttacttatttcagaaaacaaaacatgaagTGTTTTCTTGACAAGTTaaaatattgatttgtttttggaaataataagtgagttttaacttttaaaaaagtgaCATCTTTGCCAGTGGGGGTGGCTAAAATAATCTTAAATTTGGTCTGAAATAAGATGATTTTGCTTACCTCAtctgcagattatttagcttgttttaaggaaaaactcatcaTGGTATGAGATATTATATCTGACaaaacaaactgtattttttaaaagatattaatTGACCAAATATTGTAAAGCTGTTTTAGTTTAAAGCCAATATGTGCTTTTCTTACAGCCTCAAACACTTGCTAGCAACAAATGAGTCACTTTTTCCCCTTACTAATTCATTGACACAtctgcacttttttttaaatgaatccaGAAACCTACAGGTCTCACCGCATACCTCTAAAATGTCTTTAGTTTCTCATCCTAATATAAGCTcagagcaacaacaaaaaaattccaAGGTATGTTCCAAAATTTTAGCTTTTggtatttttacttgtctagaaatgcttctagatttaagaatttgtagatattttgactaaaacaagacaaaatatttaagaaagaaaagcaGGGAAGGCTTCATCGACAGCAAAAACTCAAtacctctcattctctctctctctctctctctctctctctctgtctctctttcaaTTGTTTTTGGTGCAGTTTTAAAGTGAAGGGTTTGACTATGTAGGGGTTGTATTTATGGGTACAGATGTGCCAAGCTGGATCATCTTTAGGACGTGTGATGGATCCTTGGCCTCAGGAGGCCTCGAGTGTGTGCTTTCAGAGGAGCGAATGAAGTGACAAGGGTTTTTTGTAGGTTGAAAAGATAATGCAGGAATAAGGCTGGATTTATTTTGATTCGTTGTAAATATGCCgtcttttgttttagttttccttttttctttgcCTATAGGAAGGTGTTTGTCCCATTTTGGAATTTGCTGATTTTAAAGAACCCATTTCCCTCATCATGATGCATACTGAGAGCATTTAAAGCTTTCGTTGATACAATGGAAAAGGAAGGAGTTTTGTGCATAACTGTTCCACTTTTGTTCATTCATCTGCTTCAGTTATAAAGAGTCTTACTGATTAccaggaaaataaaaaataaactgaactaTTG
>TCONS_00058702
ATGTTCAAACGGGTTGTACGACAGAGTAAGTTCCGGCATGTGTTCGGCCAGGCGGTGAAGAATGACCAGTGCTATGATGACATCAGGGTGTCCCGGGTCACATGGGACAGCGCGTTCTGTGCAGTTAACCCCAAATTTGTTGCCTTAATTGTGGAAGCCAGCGGAGGCGGAGCGTTCATGGTTTTGCCTCTACACAAgACGGGTCGTATAGACAAGGCCTACCCTACAGTATGTGGTCACACCGGCCCTGTTCTGGACATCGACTGGTGCCCTCATAATGACCAGGTCATCGCTAGTGGATCTGAAGACTGCACCGTCATGGTGTGGCAGATCCCAGAGAACGGGTTGGTGACTTCCATGTCAGAGCCAGTGGTGGTTCTGGAGGGTCATTCAAAAAGAGTGGGAGTTGTTACCTGGCATCCTACTGCACGCAACGTCCTCCTCAGTGCAGGCTGTGATAATATGATCATCATCTGGAACGTGGGGACGGGGGAGTCTATGATCACTCTGGAGGACCATCATCCGGACATCATCTACAGCATCTGCTGGAACCGCAACGGCAGCCTCATCTGCACCGCCTGCAAGGACAAGAAGATCCGCGTCATCGACCCGCGCAAGGAGGAAATCATCGCGGAGAAGGACAAGGCCCATGAGGGAGCGAGACCCATGAGAGCCATTTTCCTGTCTGATGGCAAAGTGTTCACCACTGGCTTCAGCCGCATGAGTGAGAGACAACTCGCCCTATGGGACCCAGAGAACATTGATGAGCCTGTTGCTGTCCACGAGATGGACACCAGTAACGGAGTCCTCCTGCCCTTCTATGATCCCGATACTAATGTGGTCTACCTGTGTGGAAAGGGTGACAGCAGTATTCGTTACTTTGAGATCACAGATGAAGCTCCGTTTGTCCATTACCTCAACACCTTTACCACTAAGGAGCCTCAGAGGGGCATGGGGTACATGCCTAAGAGAGGTCTGGATGTCAACAAGTGCGAGATCGCAAGGTTTTACAAACTGCATGAGAGAAAGTGTGAGCCTATCATCATGACCGTGCCAAGAAAATCGGACTTGTTCCAGGATGATCTTTACCCAGACACGGCAGGTCCTGATGCCCCTCTGGAGGCTGAGGAATGGTTTGAAGGGAAGAATGGAGACCCGGTCCTGATATCCCTGAAGCACGGATACATCCCAGGGAAGAACCGCGACCTCAAAGTAGTCAAGAAGAACATCCTAGACAACAAGATGAGCAAGAACACGGAGAACACCACTCCTGCCCACAAGACTGCCACCTCCACACCATCTATTAAAAGCGAAGCTAAGCTGGAGGAGGTTTTGAAAGAAATCAAATCTCTCCGAGAGCTGGTCAGCAGTCAGGAAAAGAGAATCGGCAAGCTGGAGGAGCAGTTGTCTAAAATGGACATCTAAAGGACCCTGCAGACCCCTCCCCCTTCTCTT

Function

symbol description
coro1ca Predicted to enable actin filament binding activity. Involved in neural crest cell migration. Predicted to be located in endosome membrane. Is expressed in several structures, including digestive system; nervous system; neural tube; periderm; and solid lens vesicle. Orthologous to human CORO1C (coronin 1C).

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0016477 cell migration biological_process
GO:0007015 actin filament organization biological_process
GO:0016197 endosomal transport biological_process
GO:0090148 membrane fission biological_process
GO:0097750 endosome membrane tubulation biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0032587 ruffle membrane cellular_component
GO:0005768 endosome cellular_component
GO:0042995 cell projection cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005938 cell cortex cellular_component
GO:0030027 lamellipodium cellular_component
GO:0010008 endosome membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030114-6 Predicted to enable actin filament binding activity. Involved in neural crest cell migration. Predicted to be located in endosome membrane. Is expressed in several structures, including digestive system; nervous system; neural tube; periderm; and solid lens vesicle. Orthologous to human CORO1C (coronin 1C).

Ensembl:

ensembl_id ENSDARG00000035598

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058701 False 5204 mRNA 0.40 11 20319519 20419863
TCONS_00058702 True 1455 mRNA 0.52 10 20366453 20416266

Neighbor

gene id symbol gene type direction distance location
XLOC_029986 ssh1a coding upstream 30227 20255568 ~ 20289292 (+)
XLOC_029985 svopa coding upstream 153831 20147830 ~ 20165688 (+)
XLOC_029984 isg15 coding upstream 206235 20112032 ~ 20113284 (+)
XLOC_029983 gatc coding upstream 211050 20103085 ~ 20108469 (+)
XLOC_029981 sgsm1a coding upstream 226323 20030414 ~ 20093196 (+)
XLOC_029988 selplg coding downstream 1676 20421539 ~ 20423541 (+)
XLOC_029989 tmem119a coding downstream 8975 20428838 ~ 20437783 (+)
XLOC_029990 si:ch211-191d15.2 coding downstream 21790 20441653 ~ 20442314 (+)
XLOC_029991 sart3 coding downstream 34011 20453874 ~ 20481389 (+)
XLOC_029992 NA coding downstream 123037 20542900 ~ 20546489 (+)
XLOC_029982 BX547941.1 non-coding upstream 241709 20077694 ~ 20077810 (+)
XLOC_029980 NA non-coding upstream 354236 19961795 ~ 19965283 (+)
XLOC_029972 NA non-coding upstream 913581 19404532 ~ 19405938 (+)
XLOC_029971 NA non-coding upstream 916141 19400399 ~ 19403378 (+)
XLOC_029966 NA non-coding upstream 1239603 19068184 ~ 19079916 (+)
XLOC_029996 BX510312.1 non-coding downstream 255070 20674933 ~ 20675050 (+)
XLOC_030005 BX470224.3 non-coding downstream 838355 21258218 ~ 21259238 (+)
XLOC_030006 BX470224.2 non-coding downstream 850587 21270450 ~ 21271359 (+)
XLOC_030007 BX470224.1 non-coding downstream 854302 21274165 ~ 21278501 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location