XLOC_029988 (selplg)


Basic Information

Item Value
gene id XLOC_029988
gene name selplg
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 20421539 ~ 20423541 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058703
GCGTCACAGTGACAGAACCTCAGCCTTAGCCTGACGCTTCATGAGGGTTTGACTTCctgtatttgcttttatttttttttgcatcgaGTAGGTTTTGTGACATTGCGTTGTACATGTGAGAGACATTTCAAACGAACTCCTAAACGACACCCAGCCAGCGACAGAAGTGGACGATGGCGGCGATGGTGGCTTACAAACTTGGTTGTTTATCAGTTCTTGTTTTGCTGCTGACTTTAAGCAGTACGGTCACCTCAAGATCTCTTAGGATGGAAAGAGAAATCAATCCCAACATAACCTcgaaaaacaacacagaaatgcaGAGCCCATCAACCGTAGCCGAAGCTGAGAAAAACATGACCATCACAATCAAAACTCCAGTGCAGACCGTTAATGTAACGCCCAAATCAAACGTCTCAACGGTTACAGATTACCACCACACCCAGCAAAATACCTCTGCAGGAACCGGGAACCTGACTGTCCACCCACCGGCAGAGAAGGAGATTAGTTTGCACACCCAACCTCCCACAACAAATAACAGCACTGGGCACATTGCGCAAGCAGGAAGCTCTGCACCCACATTTTCTCCGACATCGGTGCCTATTAAGGTAACAGAAAAGCCTACAACCACTGATAAGTCTTCATCCCATGTCTCTACGACCACTAGAAAGTCAAGCACTGTGACAACCCACTCATGTCCCACTGCTATTTCTAAACAAAACGGCCTTGTAAGCCGCTGTCTCATCGCCATTGCCTCAATGGCCGCTCTAACCACCATCTTCATCATCAGCACCATCTGCTTGGCTACAAAGCTCTCGGCGTACAGATACAGGCACAAGGCGCATCTTCTCCAGGAGACCGAGATGGTGTGTATTTCTGCTCTAATGAATGACACCGATCACCCAGTTCCAAAACCAAGACGACATCCTAAAAGTAATGGAGCCTTGATCCCAAATGCTGAGGATGGAGATCCTGATGGAGATGACCTGACTTTGAACAGCTTTCTTCCTGATACCGAAGGCCCTCTTTAGAGGAGCTTTATTTTCCTTAAAGGACCAAGAATTTACTGATGGGTGACAGAAATGTTTACTGTCTAACACTGTGGTTTTGTTGAGTTGGTGATGGTGCACACTTAACAAAGATGAATGATGAAAGGCCTGGCTTTGAACTgccattttaaagttgggtgatCAGTGTTAAGCTTGGCAGAGACATGAGATGACCTGTTTTGATATGTTAAAATATTCAGTGTAACATGTATTTATCCAAGCACGGTCTTATTATAATGTATGTTGTGAGAGAGATTAtaagttttgttattttaaatgattaggaACTTGTCATATGGGTAAAACCTTTTAGTTTGAAGCATAATGAGCATTTAAATCAAAGTATAATGATTTAAAATGGCAATTGGTATTTTTGGGCTTCGCTATAATCCTTAAACCGGCTTTTAATCACATGCTTAACCTATTTTCATCcttgatctttttttatttttgtctatttaaagggatagttcaccccaaaataaacacTTTCTTACTATTAACATGC

Function

symbol description
selplg Predicted to enable carbohydrate binding activity. Acts upstream of or within hematopoietic stem cell migration to bone marrow and hemopoiesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in cardiovascular system; head; intermediate cell mass of mesoderm; trunk; and vasculature. Human ortholog(s) of this gene implicated in carotid artery disease. Orthologous to human SELPLG (selectin P ligand).

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0050901 leukocyte tethering or rolling biological_process
GO:0035701 hematopoietic stem cell migration biological_process
GO:0097241 hematopoietic stem cell migration to bone marrow biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
ko04514 Cell adhesion molecules
ko04613 Neutrophil extracellular trap formation
ko05150 Staphylococcus aureus infection
ko04090 CD molecules

ZFIN:

id description
ZDB-GENE-120410-1 Predicted to enable carbohydrate binding activity. Acts upstream of or within hematopoietic stem cell migration to bone marrow and hemopoiesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in cardiovascular system; head; intermediate cell mass of mesoderm; trunk; and vasculature. Human ortholog(s) of this gene implicated in carotid artery disease. Orthologous to human SELPLG (selectin P ligand).

Ensembl:

ensembl_id ENSDARG00000105023

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058703 True 1554 mRNA 0.42 2 20421539 20423541

Neighbor

gene id symbol gene type direction distance location
XLOC_029987 coro1ca coding upstream 1676 20319519 ~ 20419863 (+)
XLOC_029986 ssh1a coding upstream 132247 20255568 ~ 20289292 (+)
XLOC_029985 svopa coding upstream 255851 20147830 ~ 20165688 (+)
XLOC_029984 isg15 coding upstream 308255 20112032 ~ 20113284 (+)
XLOC_029983 gatc coding upstream 313070 20103085 ~ 20108469 (+)
XLOC_029989 tmem119a coding downstream 5297 20428838 ~ 20437783 (+)
XLOC_029990 si:ch211-191d15.2 coding downstream 18112 20441653 ~ 20442314 (+)
XLOC_029991 sart3 coding downstream 30333 20453874 ~ 20481389 (+)
XLOC_029992 NA coding downstream 119359 20542900 ~ 20546489 (+)
XLOC_029993 cmklr1 coding downstream 147032 20570573 ~ 20590795 (+)
XLOC_029982 BX547941.1 non-coding upstream 343729 20077694 ~ 20077810 (+)
XLOC_029980 NA non-coding upstream 456256 19961795 ~ 19965283 (+)
XLOC_029972 NA non-coding upstream 1015601 19404532 ~ 19405938 (+)
XLOC_029971 NA non-coding upstream 1018161 19400399 ~ 19403378 (+)
XLOC_029966 NA non-coding upstream 1341623 19068184 ~ 19079916 (+)
XLOC_029996 BX510312.1 non-coding downstream 251392 20674933 ~ 20675050 (+)
XLOC_030005 BX470224.3 non-coding downstream 834677 21258218 ~ 21259238 (+)
XLOC_030006 BX470224.2 non-coding downstream 846909 21270450 ~ 21271359 (+)
XLOC_030007 BX470224.1 non-coding downstream 850624 21274165 ~ 21278501 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_00095291_00096742 NA coding CI01000339 null 95291 ~ 97825 (+)