XLOC_029991 (sart3)


Basic Information

Item Value
gene id XLOC_029991
gene name sart3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 20453874 ~ 20481389 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058707
ACTCCATTCCAgtcggtggcggtaatgcacctatAAGTCTGGTTGCCAACCGCCAGTAAaacccaaagaagaagaagaagaagaagaagttctCAACATGGCGGCGACGGGGAACGAAGAGCAGACGCTGTTGCCAGATATCGAAGAGGAGGCTGAGGGCATGGAGCGAGAGATGGAGTCCGAGGATGACGAGGAGGAAGGCATGGGAGTCGAGCATTCcgaggaggaggatgaagaggacACGTCCGAGGACGAGCGGGAGAATGAAGCCGAGATCCAGCGGCTGGAGGAGCAGCTGTCAATCAATGCATTTGATTACAACTGCCATGTGGACCTGATCAAACTCCTGCGGCAAGAAGGAAAACTTCACAGACTACGCAAAGCCAGACAGAAGATGAGTGAACTCTTTCCTCTCACTGAAGAGATTTGGCTGGACTGGCTGAAGGATGAAATCCGCATAACAGAAGATGAATCAGATCGTGAGAAAGTCTACGAGCTGTTCGAGAGGGCTATCAAGGACTATGTCTGTCCAGAGATCTGGCTGGAGTATGTACAGTACTCCATTGGTGGAATGGGAGCACAGGGGGGCATTGAACGGGTTCGGTCCATCTTTGAGAGGGCTCTGACTGCTGTGGGTTTACACATGACTAAAGGAGCTTCAATCTGGGAGGCCTACAGAGAGTTTGAGATTGTGATTCTCTCCACAGTCCAGCCTCCTCCTGGCACTGTTCCATCACAAGAGCAGCAGGAACTGTTGAGCGCACAGCTCGAGCGCATACACACACTCTTCAGACGGCAGCTAGCTGTACCTCTAATGGATATGGAGGGTACATACGCAGAGTATTCAGACTGGGCAGATGATGGCGTACCAGAGACAGTCACACACCAGTACAGACGTGCCCTGCAACAGATGGAGAAAGGCAAACCGTATGAGGAGGCCTTGctGGTCTCTGAACCTCCAAAGCTGGCCGAGTATCAATCCTACATAGATTTCGAGATAAAGGAAGGAGATCCAGCCCGTGTCCAGATCATATTTGAGCGAGCGCTGGCCGAGAACTGCCTCGTGCCAGATCTCTGGATCAAATACACCACGTATCTGGATCGTCAATTGAAAATTAAAGATCTAGTCTTATCTGCTCATGAGCGAGCTGTCCGGAACTGTCCTTGGACCATGGGTCTATGGAAGAGCTATCTTTTGGCTCTTGAGAGGCATGGGGCTGACCATCAGACAGTGAAAGACGTGTTTGAAAAGGCTCTGAATGCAGGATTCATCCAGGCAACTGACTATGTAGAAATCTGGCAATCTTATCTAGATTACCTGAGGAGACGTGTTGACTTCAGTAAAGAGTGGAGCAGGGAGTTGGACGAGCTGCGGGCAGCTTTCTCGCGCTCCCTTGAATACCTGAAACAGGACGTAGAAGAGAGGTTCAGTGAAAGTGGAGATCTGTCCTGCACGCTAATGCAGATCTGGGCGAGGATAGAGGCCTTACACTGCAAGAACATGCAGAAGGCTCGAGAGCTGTGGGATAGCATCATGACAAAGGGGAATGCGAAGTACGCCAACATGTGGCTGGAATATTACAACCTGGAAAGGTCTTATGGAGATGCTGCTCACTGCAGGAAGGCTCTTCACAGAGCAGTACAGTGTACATCAGACTACCCTGAGCACGTGTGTGATGTCCTGCTCAACTTTGAAAGAGTGGAAGGCTCTCTGGAAGACTGGGATGCTGCAGTCCAAAAAACAGAGACCAAACTTAATAGAGTCTGTGAGCAGAGAGCACGAGTGGCAGAAAAAGAGGCTCTTCACGCCAGACAAGAGGAGGAGAAGGCAGAGCAAAGGAGAAAAGTGAAGGCAGATAAAAAAGCCCAGAAGAAAGGCCAGAAAGCAAACAGAACAGGGGATAAACGGAAAGCTGAAGATGACGATGAGGAGGAATGGGGAGAAGAAGCAGAGCTGCCGTCCAAGAGGCTCAGAGGAGAGGACGACTTTGACAGCACGGTCACGGAGGAGCTCATGGAGACAGAAAGTGGACTTTTCGGCCGCCGAGCTCCACCAGCGCGTAAAACTGAGCCACCTGGTTTTCGAAAGAACCAGCAGGGAGCGCCTGAACCACAGCGACAACCCCACGACATGCCAAAGGAGCAGCGCAAAGATGAAAACTGTGTGTTTGTTAGTAACTTGACCTTTAATATGGAGGACCCTGAAGGCAAGCTGCGAACATTGTTTCAGGGTTGTGGGACCATACAGCAGGTGCGACCTGTGTTTACAGCAAAAGGTACATTTAGAGGCTATTGCTACGTGCAGTTTGAAGACCGACTGGCTGTACCTGAAGCACTGAAAATGGACAGGCAGGAAGTGGACGGGCGGCCCATGTATGTGTCTCCTTGTGTGGACAAGAATAAGAATCCTGACTTCAAGGTTTTTAAGTACAAAACTTCAATGGAAAAGCACAAGATCTTCATCTCGGGCCTGCCATACTCCGCCACTAAAGAGACACTGGAGGATCTCTGTAAAGAACACGGCACAATCAGAGCCATCCGGATAGTCACCAACCGCTCTGGCAAATCCAAGGGTTTGGCGTATGTGGAGTTTGAAGATGAAGCACAGGCCTCTCAGGCGGTGTTGAAGATGGATGGCACCATGTTAGAGAACTTCACCCTCTCTGTTGCTATTAGCAACCCCCCAGGCAGGAGGATGAAAGACGAAGCAGCGCCGAGTCGATTCCTGGGGGCAGCGATGCCAAGGCAACTTCAGGGAGCGAGGGGTAAAGGACGCACTCAAATCTCTCTGCTGCCACGCTCTCTGTACCGGCAGAGCACTCCAGATGCCAAAGCAGAGAACGGCACCATCTCTGCACCTCATGCCACAGTGACAGACGGAGAAACCAGCCTGGACACGCAAACCAAGTCTCTTTCCAATGAGGACTTTGCCAGGATGCTCCTCAAGAAGTGAAACTGTATGCAGATAAACCCCCCTGCCTTCTGACAGAAAGCCATGCTGTGTCCTTATGAAGCCCGGC
>TCONS_00058708
agttctCAACATGGCGGCGACGGGGAACGAAGAGCAGACGCTGTTGCCAGATATCGAAGAGGAGGCTGAGGGCATGGAGCGAGAGATGGAGTCCGAGGATGACGAGGAGGAAGGCATGGGAGTCGAGCATTCcgaggaggaggatgaagaggacACGTCCGAGGACGAGCGGGAGAATGAAGCCGAGATCCAGCGGCTGGAGGAGCAGCTGTCAATCAATGCATTTGATTACAACTGCCATGTGGACCTGATCAAACTCCTGCGGCAAGAAGGAAAACTTCACAGACTACGCAAAGCCAGACAGAAGATGAGTGAACTCTTTCCTCTCACTGAAGAGATTTGGCTGGACTGGCTGAAGGATGAAATCCGCATAACAGAAGATGAATCAGATCGTGAGAAAGTCTACGAGCTGTTCGAGAGGGCTATCAAGGACTATGTCTGTCCAGAGATCTGGCTGGAGTATGTACAGTACTCCATTGGTGGAATGGGAGCACAGGGGGGCATTGAACGGGTTCGGTCCATCTTTGAGAGGGCTCTGACTGCTGTGGGTTTACACATGACTAAAGGAGCTTCAATCTGGGAGGCCTACAGAGAGTTTGAGATTGTGATTCTCTCCACAGTCCAGCCTCCTCCTGGCACTGTTCCATCACAAGAGCAGCAGGAACTGTTGAGCGCACAGCTCGAGCGCATACACACACTCTTCAGACGGCAGCTAGCTGTACCTCTAATGGATATGGAGGGTACATACGCAGAGTATTCAGACTGGGCAGATGATGGCGTACCAGAGACAGTCACACACCAGTACAGACGTGCCCTGCAACAGATGGAGAAAGGCAAACCGTATGAGGAGGCCTTGctGGTCTCTGAACCTCCAAAGCTGGCCGAGTATCAATCCTACATAGATTTCGAGATAAAGGAAGGAGATCCAGCCCGTGTCCAGATCATATTTGAGCGAGCGCTGGCCGAGAACTGCCTCGTGCCAGATCTCTGGATCAAATACACCACGTATCTGGATCGTCAATTGAAAATTAAAGATCTAGTCTTATCTGCTCATGAGCGAGCTGTCCGGAACTGTCCTTGGACCATGGGTCTATGGAAGAGCTATCTTTTGGCTCTTGAGAGGCATGGGGCTGACCATCAGACAGTGAAAGACGTGTTTGAAAAGGCTCTGAATGCAGGATTCATCCAGGCAACTGACTATGTAGAAATCTGGCAATCTTATCTAGATTACCTGAGGAGACGTGTTGACTTCAGTAAAGGCAAGAGCATGGAGTTGGACGAGCTGCGGGCAGCTTTCTCGCGCTCCCTTGAATACCTGAAACAGGACGTAGAAGAGAGGTTCAGTGAAAGTGGAGATCTGTCCTGCACGCTAATGCAGATCTGGGCGAGGATAGAGGCCTTACACTGCAAGAACATGCAGAAGGCTCGAGAGCTGTGGGATAGCATCATGACAAAGGGGAATGCGAAGTACGCCAACATGTGGCTGGAATATTACAACCTGGAAAGGTCTTATGGAGATGCTGCTCACTGCAGGAAGGCTCTTCACAGAGCAGTACAGTGTACATCAGACTACCCTGAGCACGTGTGTGATGTCCTGCTCAACTTTGAAAGAGTGGAAGGCTCTCTGGAAGACTGGGATGCTGCAGTCCAAAAAACAGAGACCAAACTTAATAGAGTCTGTGAGCAGAGAGCACGAGTGGCAGAAAAAGAGGCTCTTCACGCCAGACAAGAGGAGGAGAAGGCAGAGCAAAGGAGAAAAGTGAAGGCAGATAAAAAAGCCCAGAAGAAAGGCCAGAAAGCAAACAGAACAGGGGATAAACGGAAAGCTGAAGATGACGATGAGGAGGAATGGGGAGAAGAAGCAGAGCTGCCGTCCAAGAGGCTCAGAGGAGAGGACGACTTTGACAGCACGGTCACGGAGGAGCTCATGGAGACAGAAAGTGGACTTTTCGGCCGCCGAGCTCCACCAGCGCGTAAAACTGAGCCACCTGGTTTTCGAAAGAACCAGCAGGGAGCGCCTGAACCACAGCGACAACCCCACGACATGCCAAAGGAGCAGCGCAAAGATGAAAACTGTGTGTTTGTTAGTAACTTGACCTTTAATATGGAGGACCCTGAAGGCAAGCTGCGAACATTGTTTCAGGGTTGTGGGACCATACAGCAGGTGCGACCTGTGTTTACAGCAAAAGGTACATTTAGAGGCTATTGCTACGTGCAGTTTGAAGACCGACTGGCTGTACCTGAAGCACTGAAAATGGACAGGCAGGAAGTGGACGGGCGGCCCATGTATGTGTCTCCTTGTGTGGACAAGAATAAGAATCCTGACTTCAAGGTTTTTAAGTACAAAACTTCAATGGAAAAGCACAAGATCTTCATCTCGGGCCTGCCATACTCCGCCACTAAAGAGACACTGGAGGATCTCTGTAAAGAACACGGCACAATCAGAGCCATCCGGATAGTCACCAACCGCTCTGGCAAATCCAAGGGTTTGGCGTATGTGGAGTTTGAAGATGAAGCACAGGCCTCTCAGGCGGTGTTGAAGATGGATGGCACCATGTTAGAGAACTTCACCCTCTCTGTTGCTATTAGCAACCCCCCAGGCAGGAGGATGAAAGACGAAGCAGCGCCGAGTCGATTCCTGGGGGCAGCGATGCCAAGGCAACTTCAGGGAGCGAGGGGTAAAGGACGCACTCAAATCTCTCTGCTGCCACGCTCTCTGTACCGGCAGAGCACTCCAGATGCCAAAGCAGAGAACGGCACCATCTCTGCACCTCATGCCACAGTGACAGACGGAGAAACCAGCCTGGACACGCAAACCAAGTCTCTTTCCAATGAGGACTTTGCCAGGATGCTCCTCAAGAAGTGAAACTGTATGCAGATAAACCCCCCTGCCTTCTGACAGAAAGCCATGCTGTGTCCTTATGAAGCCCGGCGGAGAAACAGCGTTTTAATTTAGCCTACTTTCTGTAAATATGAGCCCAGccctcaatatatatataatatgactATTTTAACACCTCATTCTTGGAGATGCGAGCTgtgttgttttctttatttaatacgTAATAAAGAAAGGGATTTGAGGGGCAGATTTCAGATTTTGTCAGCGAGTATTTTTTTAACAGGATGTTAATGCAAGGTATATGCAAGAACATTTAATAAGAAGATACGTGTATCATAAACCGCTTCATTTCTCAATAGACCCATTCCGGGGAAGCTGTCTTTCACctctacaaaaaaataaagatatacctTTTATTTGACGTTTATCGGAACTGCatgttgtataaataatttatttgcagTACCACATCCATCTGAAACAGTCATGCATGTGTGGATTCACAACTGTCTTCATAACGGCTCTAAATGAAGGCTTATCGATGATCCAGCATCACATACGTTTGTGACCGAAGTTCACCTTTTGTGTTTCCGCAGCGCTTGAACTGAAAGCTGTGCACTCATATTTTAGCTTTTAGATTTTGTATTTTCTCAAAGCGCTGCCCTTTCGGTCTTTTAATTGCAGACACAGCTTGTAAAACCTGCCTTACCTGGTGTGCTCAAGGGTCcgaaagggattgttcacctaaaaataaaaattccctCTGTTTATTTGCCAACAAGTAGCTCCAAATCTTCACAAGTTTCTCTTTTTGGTAAACACAGAAGCAGATGGATGCTGGAAAATGGTAAAAGTAGTGAAAAGGTTTTTAAACTATCTTCGTTTTCTTTTcacgtttaaaatgattttggagAATTTCCAATTTTAGGAGAACTATTCCTTGAAGGTTAAAGCTTGTGTTCCACAGCCTGATTCAGCACAAGGAGTAAAGTTTTAGCtaagttagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggctgagGATCAGAGTTTCTGCTTTAGACCTTCCCCGATGTTGAAGAATCTATGCAGCTGTAAATCGCTCAAACTTTCCACTGCGAGTTCACCTGACTGAATCCCATCCTCTTCTGTATTGtgtatatacacacgcacacacgacATTTATCATCCAAATGTTCTggatattagtattatttactggTTTCGATGATGGACGTGTGCATTTCATCCACTATTTGACGTTAAGCTGAttcgttttgtttatttttgatcgTGTTTTTTCACACCCCTCAATGGTTGGCCATAGttttgtaaaacatttgtatattttaaactaaaatttaGAACAAAGTAGCTCTATATATTTGCGTTTGATCACCACAGTGGCCTAAAGTAGTGATTGAGGaacaaaaaaaaggaataaaaataaaacgtgcTGTTGCAAATGTCTtgttcaacattaaaaaaaaggagAGAGAAAACCTGGTATAAGTGTGGTAAATTGTGCACTTTTTCTTGATTTAGTTTACTGTATGGATTATTTTGATTATAGATTGGTGATTTTTCTTTAGCGCCGTATTCGGTGTCATCTTTAAGGCACATTtataatcatttctaataatgttCTTGTATTTCCTGTGTTGCTCAATTTGTACGGTCATGTTCTTTTCCCCCATTTGTTTTAAGGCCTAAATTGTTTAAGCAATTAAATGTATGTGGTTGTCAAA

Function

symbol description
sart3 Predicted to enable U6 snRNA binding activity and histone binding activity. Involved in spliceosomal snRNP assembly. Acts upstream of or within exocrine pancreas development; hematopoietic or lymphoid organ development; and spliceosomal complex assembly. Predicted to be located in Cajal body. Predicted to be part of ASAP complex. Predicted to be active in cytoplasm and nucleoplasm. Orthologous to human SART3 (spliceosome associated factor 3, U4/U6 recycling protein).

GO:

id name namespace
GO:0030098 lymphocyte differentiation biological_process
GO:0006334 nucleosome assembly biological_process
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0031017 exocrine pancreas development biological_process
GO:0000387 spliceosomal snRNP assembly biological_process
GO:0048538 thymus development biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:1903586 positive regulation of histone deubiquitination biological_process
GO:0000245 spliceosomal complex assembly biological_process
GO:0008380 RNA splicing biological_process
GO:0015030 Cajal body cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0016607 nuclear speck cellular_component
GO:0061574 ASAP complex cellular_component
GO:0005691 U6atac snRNP cellular_component
GO:0071001 U4/U6 snRNP cellular_component
GO:0005737 cytoplasm cellular_component
GO:0042393 histone binding molecular_function
GO:0017070 U6 snRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03041 Spliceosome
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040724-10 Predicted to enable U6 snRNA binding activity and histone binding activity. Involved in spliceosomal snRNP assembly. Acts upstream of or within exocrine pancreas development; hematopoietic or lymphoid organ development; and spliceosomal complex assembly. Predicted to be located in Cajal body. Predicted to be part of ASAP complex. Predicted to be active in cytoplasm and nucleoplasm. Orthologous to human SART3 (spliceosome associated factor 3, U4/U6 recycling protein).

Ensembl:

ensembl_id ENSDARG00000008032

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058707 False 3020 mRNA 0.51 19 20453874 20479665
TCONS_00058708 True 4657 mRNA 0.46 19 20453961 20481389

Neighbor

gene id symbol gene type direction distance location
XLOC_029990 si:ch211-191d15.2 coding upstream 11560 20441653 ~ 20442314 (+)
XLOC_029989 tmem119a coding upstream 16091 20428838 ~ 20437783 (+)
XLOC_029988 selplg coding upstream 30333 20421539 ~ 20423541 (+)
XLOC_029987 coro1ca coding upstream 34011 20319519 ~ 20419863 (+)
XLOC_029986 ssh1a coding upstream 164582 20255568 ~ 20289292 (+)
XLOC_029992 NA coding downstream 61511 20542900 ~ 20546489 (+)
XLOC_029993 cmklr1 coding downstream 89184 20570573 ~ 20590795 (+)
XLOC_029994 cmklrl2 coding downstream 118269 20599658 ~ 20600537 (+)
XLOC_029995 cmklrl2 coding downstream 132077 20613466 ~ 20614431 (+)
XLOC_029996 BX510312.1 coding downstream 193544 20674933 ~ 20675050 (+)
XLOC_029982 BX547941.1 non-coding upstream 376064 20077694 ~ 20077810 (+)
XLOC_029980 NA non-coding upstream 488591 19961795 ~ 19965283 (+)
XLOC_029972 NA non-coding upstream 1047936 19404532 ~ 19405938 (+)
XLOC_029971 NA non-coding upstream 1050496 19400399 ~ 19403378 (+)
XLOC_029966 NA non-coding upstream 1373958 19068184 ~ 19079916 (+)
XLOC_030005 BX470224.3 non-coding downstream 776829 21258218 ~ 21259238 (+)
XLOC_030006 BX470224.2 non-coding downstream 789061 21270450 ~ 21271359 (+)
XLOC_030007 BX470224.1 non-coding downstream 792776 21274165 ~ 21278501 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_00117608_00135474 SART3 coding CI01000339 null 117608 ~ 135672 (+)