XLOC_029993 (cmklr1)


Basic Information

Item Value
gene id XLOC_029993
gene name cmklr1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 20570573 ~ 20590795 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058710
TGGCTTGAGCTGTTGCTTGCTGAACATTCCGGCAAACAAGCTGTTAGATGTTATGGATCAGTGGACGGGTAAGAGGAAATTGAAATAAAATCACAATGGATTTACTAGACTTAACATATGATTACGAAGACTATGGAAATGTCACCGACTATGGAAATTTCACCTTTGGCAATGTAACACATGAAGAAACTTATTACCACCACACAGCCCAAAACATGTGCTTCACTCAGGTCCTCTGCGTGCTGTTGCTGGTGATCAACATGCTCATCTGTCTGCTGGGTCTTAGTGGAAACGGCGTGGTCATCTGGATCGCAGGGTTTGCCATGAAGAAGTCAGTCAACACCACCTGGTACCTGAGTCTGGCTGTGTCTGACTTCATATTTTGCGCCTTTTTGCCTTTTAACATTGCCTACAGTGCCACATCCAACTGGATCTTCGGCCTCTTCATGTGCAAGTTCACTTCGTTCGTCATGTTCCTCAACATGTTCAGCAGCATCTTCATCCTGGTCATCATCAGCGTGGACCGTTGCGTCGCCGTCATGTTCCCCGTTTGGGCACAAAATCACCGCACCATTGGAAAAGCATCGGTGTTGATCATACTTGCCTGGATCGCCTCCGCAGCTTTAAGCATCCCATCAATTGTGTACCGTGACGTCCAGAATTATCTGGGCACAAACGATTGCATGAACAACTACACGTCCAGCAGGTACGGCCATAAAGTCATTGCTGTGAGCCGCTTTATTTTTGGCTTTATAATTCCATTCATCCTCATCATCCTTTGCTACACGGTCATTATCGTCAGGCTGAGAGCTTCCAAAATGGCCAAATCCAACAAGCCATTTAAGATCATGACAGCTCTCATCCTGACCTTCTTCCTTTGCTGGTTGCCGTACCATACATTTGTGCTGATCGAATTTAACCAGACCTTTGAGAATGGCATCATTCGTCTTGGGATGCAAATAGGCACCATCACTGCTGCCGCAAACAGCTTCCTGAACCCTGTGTTGTACGTGTTCATGGGCAATGACTTCAGAAAGAGGTTCAAGAGTTCCATCTTATCCAAGATTGAGAATGCTATTGGAGAAGAAGGACGAACCATCAGTCGCTATCTGTCCCGCTCCAGCTCGGTGGACGCCAGGGCTTCCACTCATATCTGA
>TCONS_00058711
GTTGTCTGCTTACAGGAAATTGAAATAAAATCACAATGGATTTACTAGACTTAACATATGATTACGAAGACTATGGAAATGTCACCGACTATGGAAATTTCACCTTTGGCAATGTAACACATGAAGAAACTTATTACCACCACACAGCCCAAAACATGTGCTTCACTCAGGTCCTCTGCGTGCTGTTGCTGGTGATCAACATGCTCATCTGTCTGCTGGGTCTTAGTGGAAACGGCGTGGTCATCTGGATCGCAGGGTTTGCCATGAAGAAGTCAGTCAACACCACCTGGTACCTGAGTCTGGCTGTGTCTGACTTCATATTTTGCGCCTTTTTGCCTTTTAACATTGCCTACAGTGCCACATCCAACTGGATCTTCGGCCTCTTCATGTGCAAGTTCACTTCGTTCGTCATGTTCCTCAACATGTTCAGCAGCATCTTCATCCTGGTCATCATCAGCGTGGACCGTTGCGTCGCCGTCATGTTCCCCGTTTGGGCACAAAATCACCGCACCATTGGAAAAGCATCGGTGTTGATCATACTTGCCTGGATCGCCTCCGCAGCTTTAAGCATCCCATCAATTGTGTACCGTGACGTCCAGAATTATCTGGGCACAAACGATTGCATGAACAACTACACGTCCAGCAGGTACGGCCATAAAGTCATTGCTGTGAGCCGCTTTATTTTTGGCTTTATAATTCCATTCATCCTCATCATCCTTTGCTACACGGTCATTATCGTCAGGCTGAGAGCTTCCAAAATGGCCAAATCCAACAAGCCATTTAAGATCATGACAGCTCTCATCCTGACCTTCTTCCTTTGCTGGTTGCCGTACCATACATTTGTGCTGATCGAATTTAACCAGACCTTTGAGAATGGCATCATTCGTCTTGGGATGCAAATAGGCACCATCACTGCTGCCGCAAACAGCTTCCTGAACCCTGTGTTGTACGTGTTCATGGGCAATGACTTCAGAAAGAGGTTCAAGAGTTCCATCTTATCCAAGATTGAGAATGCTATTGGAGAAGAAGGACGAACCATCAGTCGCTATCTGTCCCGCTCCAGCTCGGTGGACGCCAGGGCTTCCACTCATATCTGAAAAACAGACTCAAAGCTGAGTGACTGTTTTGTATGGATGTTAGTTTAATGCACTGACAAAGTTTGATTTGTTGTACAATTAAATTGTGCATGAACATTCTACGTtttaagacaaaaatatgatATATAGGACTATAAGAAATGTACTGCCTCAGTGCTGCTTAGTGGATGCCTGGGAAAAGAAAGTAGAACTTGGTTATTTTACAATTAATCATCCACTAATACACC

Function

symbol description
cmklr1 Predicted to enable C-C chemokine binding activity and C-C chemokine receptor activity. Predicted to be involved in several processes, including calcium-mediated signaling; nervous system development; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Orthologous to human CMKLR1 (chemerin chemokine-like receptor 1).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007204 positive regulation of cytosolic calcium ion concentration biological_process
GO:0006935 chemotaxis biological_process
GO:0006955 immune response biological_process
GO:0007420 brain development biological_process
GO:0019722 calcium-mediated signaling biological_process
GO:0022008 neurogenesis biological_process
GO:0007165 signal transduction biological_process
GO:0060326 cell chemotaxis biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016493 C-C chemokine receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0019956 chemokine binding molecular_function
GO:0019957 C-C chemokine binding molecular_function

KEGG:

id description
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-060526-126 Predicted to enable C-C chemokine binding activity and C-C chemokine receptor activity. Predicted to be involved in several processes, including calcium-mediated signaling; nervous system development; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane. Orthologous to human CMKLR1 (chemerin chemokine-like receptor 1).

Ensembl:

ensembl_id ENSDARG00000090890

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058710 False 1157 mRNA 0.47 2 20570573 20590568
TCONS_00058711 True 1324 mRNA 0.44 1 20589472 20590795

Neighbor

gene id symbol gene type direction distance location
XLOC_029992 NA coding upstream 24084 20542900 ~ 20546489 (+)
XLOC_029991 sart3 coding upstream 89184 20453874 ~ 20481389 (+)
XLOC_029990 si:ch211-191d15.2 coding upstream 128259 20441653 ~ 20442314 (+)
XLOC_029989 tmem119a coding upstream 132790 20428838 ~ 20437783 (+)
XLOC_029988 selplg coding upstream 147032 20421539 ~ 20423541 (+)
XLOC_029994 cmklrl2 coding downstream 8863 20599658 ~ 20600537 (+)
XLOC_029995 cmklrl2 coding downstream 22671 20613466 ~ 20614431 (+)
XLOC_029996 BX510312.1 coding downstream 84138 20674933 ~ 20675050 (+)
XLOC_029997 si:ch211-240b21.2 coding downstream 102929 20693724 ~ 20695903 (+)
XLOC_029998 limk2 coding downstream 232614 20823409 ~ 20863374 (+)
XLOC_029982 BX547941.1 non-coding upstream 492763 20077694 ~ 20077810 (+)
XLOC_029980 NA non-coding upstream 605290 19961795 ~ 19965283 (+)
XLOC_029972 NA non-coding upstream 1164635 19404532 ~ 19405938 (+)
XLOC_029971 NA non-coding upstream 1167195 19400399 ~ 19403378 (+)
XLOC_030005 BX470224.3 non-coding downstream 667423 21258218 ~ 21259238 (+)
XLOC_030006 BX470224.2 non-coding downstream 679655 21270450 ~ 21271359 (+)
XLOC_030007 BX470224.1 non-coding downstream 683370 21274165 ~ 21278501 (+)
XLOC_030008 NA non-coding downstream 694247 21285042 ~ 21285547 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_00210534_00211598 NA coding CI01000339 null 210059 ~ 211601 (+)
bowfin (Amia calva) G118285 NA non-coding CM030135.1 CM030135.1 19456142 ~ 19456983 (+)