XLOC_029994 (cmklrl2)


Basic Information

Item Value
gene id XLOC_029994
gene name cmklrl2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 20599658 ~ 20600537 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058712
GAATTCAACATCAGATTATGAAGGAGATTATGATGGGGATTATTTAAACGAActccaaaaaaaagtaaaagcagGAAATCCTGATGATTTTCGAGCTGGTCACTGCAAGGATGCATTATGTGTGATCACAGTCATTGTTAATGTGATAATTTTCCTTCTCGGCATCGTTGGAAACGGTGCGGTGATCTGGATTACTGGTTTTAAGATGAGAAAGTCAGTGAACACCACCTGGTACCTGAGCCTGGCTTTGTCTGACTTCATTTTCTGCTCTACTCTGCCTCTGAGCATCAGCAGAATAGTTATGGACACCTGGATCTTTGGCCTCTTCATGTGCAAGTTCACCTCATTTGTTATGACCCTCAATATGTACAGCAGCATCTTCATCCTGGTCATCATTAGTGTGGATCGCTGCATCGCCGTCAAGTTTCCCGTTTGGGCCCAGAATCGACGCACTGTGCAGAGAGCTTCTTTAGTGGTTTTGTTGGTTTGGTTTGTGTCTGCTTTGCTTAGCATTCCAGCTGCCTACTTCAGAAATGTTGCAGATAAACCACACGTAGTGATATGTTATTCCCATTATGAGCATCATCACAGTACCATTGTGTTTATACGCTTCACTTTTGGGTTTCTGATTCCACTCCTGATGATTTCCACCTGTTACTCTATTCTGATTTGTAAACTTAGATCAAACCAAATGTCCAAATCCACCAAGCCCTACAAGATCATGACGATACTGATCACAGCTTTTTTCCTCTGCTGGTTACCTTTTCACATAGTTACTATTGTAGAGTTGAGCCAAACTAAGGACAGTCAAGCCATGTACAGACCCCAACAAGTATCTGTTACTCTTGCCAGTGTGAACAGCTTTCTAAACCCTTTCCTG

Function

symbol description
cmklrl2 Predicted to enable G protein-coupled receptor activity and complement receptor activity. Predicted to be involved in several processes, including complement receptor mediated signaling pathway; positive regulation of cytosolic calcium ion concentration; and positive regulation of macrophage chemotaxis. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007200 phospholipase C-activating G protein-coupled receptor signaling pathway biological_process
GO:0007204 positive regulation of cytosolic calcium ion concentration biological_process
GO:0006935 chemotaxis biological_process
GO:0006954 inflammatory response biological_process
GO:0010759 positive regulation of macrophage chemotaxis biological_process
GO:0002430 complement receptor mediated signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0050848 regulation of calcium-mediated signaling biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004875 complement receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-127 Predicted to enable G protein-coupled receptor activity and complement receptor activity. Predicted to be involved in several processes, including complement receptor mediated signaling pathway; positive regulation of cytosolic calcium ion concentration; and positive regulation of macrophage chemotaxis. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane.

Ensembl:

ensembl_id ENSDARG00000110362

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058712 True 880 mRNA 0.42 1 20599658 20600537

Neighbor

gene id symbol gene type direction distance location
XLOC_029993 cmklr1 coding upstream 8863 20570573 ~ 20590795 (+)
XLOC_029992 NA coding upstream 53169 20542900 ~ 20546489 (+)
XLOC_029991 sart3 coding upstream 118269 20453874 ~ 20481389 (+)
XLOC_029990 si:ch211-191d15.2 coding upstream 157344 20441653 ~ 20442314 (+)
XLOC_029989 tmem119a coding upstream 161875 20428838 ~ 20437783 (+)
XLOC_029995 cmklrl2 coding downstream 12929 20613466 ~ 20614431 (+)
XLOC_029996 BX510312.1 coding downstream 74396 20674933 ~ 20675050 (+)
XLOC_029997 si:ch211-240b21.2 coding downstream 93187 20693724 ~ 20695903 (+)
XLOC_029998 limk2 coding downstream 222872 20823409 ~ 20863374 (+)
XLOC_029999 si:dkey-174n20.1 coding downstream 321563 20922100 ~ 20928198 (+)
XLOC_029982 BX547941.1 non-coding upstream 521848 20077694 ~ 20077810 (+)
XLOC_029980 NA non-coding upstream 634375 19961795 ~ 19965283 (+)
XLOC_029972 NA non-coding upstream 1193720 19404532 ~ 19405938 (+)
XLOC_029971 NA non-coding upstream 1196280 19400399 ~ 19403378 (+)
XLOC_030005 BX470224.3 non-coding downstream 657681 21258218 ~ 21259238 (+)
XLOC_030006 BX470224.2 non-coding downstream 669913 21270450 ~ 21271359 (+)
XLOC_030007 BX470224.1 non-coding downstream 673628 21274165 ~ 21278501 (+)
XLOC_030008 NA non-coding downstream 684505 21285042 ~ 21285547 (+)

Expression


Co-expression Network