XLOC_030084 (carnmt1)


Basic Information

Item Value
gene id XLOC_030084
gene name carnmt1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 25304499 ~ 25309549 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058828
AACTCATGTTCATGAACGAGTGAATCGAGCCGAACGGCAGTTCCGATGCCTTCCAGATCACCACCAGCAGCTTTTGACCAACTTCCTGCCACATCTAAACAAGCTCCGCTACTGTATCGACCAAAACCAAGAAGTGCTGCAGGCCGTTGTGCACAACTGCCTCCATATGTTTGAGAACATGGAGTATGGACAGGATGTTGACCCAAGGAAAGTACGGCCTTCCTCGACTTTTGATATGGACAAGCTGAAGTCTACCATAAAGCAGTTTGTCCGTGACTGGAGTGAAGCAGGAAAGGCTGAAAGAGACAGCTGTTATAAACCAATTATAGATGAGATCCAGAGACTCTTTCCTCCTGACCAGTGTGACGTGTCCCAGGTCCGAGTGTTAGTGCCGGGGGCTGGCCTGGGTCGACTCGCATGGGAAATCGCTCATCTGGGCTATTCCTGCCAAGGCAACGAGTGGAGTTTCTTCATGCTCTTCTCATCTAATTTTGTTCTTAATAGGTGTGATAAGGAGAATGCTTTGACTCTTTATCCCTGGATTCACCAGTTCAGTAATAACAAAGCATCCTCTGATCAGACAAGACCTGTGTCTTTTCCTGATGTCAACCCACAGAGCCTCCCAGAAGACTCAGACTTTTCTATGGTCGCTGGAGACTTTCAAGAAGTATACAATGATCCTGAAATGTGGGATTGCGTCGCTACTTGTTTTTTCATTGACACTGCCCACAATGTTCTCGATTACATTGAAACCATCTGGAATATTCTAAAGCCTGGTGGTGTTTGGTTGAATTTGGGTCCACTTCTGTACCACTATGAGAATATGGCAAATGAATTATCCATAGAGCTGAGCTATGAAGACATAAAGGCTGTTGCTATGAAATATGGATTTGTCCTGGAGttgGAGAGGGAATCTGTTCCCAGCACATACACAGAGAACGATCGCTCCATGCTCAAGTACCTTTATGACTCTGTCTTTTTTATTGTACGGAAACCTGCAAAACAGTTGATCAATGGAGATAAGGCACTTAAAGATAGCCAAACTGAAGATTCTTTACACACAAAAAACTCAACATGACCATTAGATGGATGGCTGAAGCTCTGGATCATATCACAGATAACTGACCCAATAATAAACTTATGGATCATTTTAGCAAATTCCTGATAATACAAAAAGACTGGAGCTTTATTATGTGCTGACTTATTTCCCATTTACCAAAAAAGTAAGTCATGTTTTGGTGCCTCATTTAACAGTGATGTTCCTCAGGTTTTGGGTGCTGCTTCACTTTATGCTAATGCCACTTATCACTCGACAAGTACATTTCAGTGTTTTTCTTGCAGTTGTTTACATTAATATCTTCCATGTCCAAAATAGTAGAGTGACAGACTCTGCTCTGGATCTTAAACAGATACTTCTCCAGCCTCTTTGAGGAAATTTGCTGTCCATCAATATTGTGATAATTGGCGGCGCTGAAATAAAGTTGTTTTAAACTTACATGATTTTCATGATCTTGTACATATAATGTAATAAAGTTTTTACAAACAC

Function

symbol description
carnmt1 Predicted to enable carnosine N-methyltransferase activity. Predicted to be involved in carnosine metabolic process. Predicted to be active in cytosol and nucleus. Orthologous to human CARNMT1 (carnosine N-methyltransferase 1).

GO:

id name namespace
GO:0035498 carnosine metabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity molecular_function
GO:0030735 carnosine N-methyltransferase activity molecular_function

KEGG:

id description
ko00340 Histidine metabolism

ZFIN:

id description
ZDB-GENE-050306-48 Predicted to enable carnosine N-methyltransferase activity. Predicted to be involved in carnosine metabolic process. Predicted to be active in cytosol and nucleus. Orthologous to human CARNMT1 (carnosine N-methyltransferase 1).

Ensembl:

ensembl_id ENSDARG00000102865

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058828 True 1546 mRNA 0.42 7 25304499 25309549

Neighbor

gene id symbol gene type direction distance location
XLOC_030083 NA coding upstream 54823 25248198 ~ 25249676 (+)
XLOC_030082 paxx coding upstream 217207 25084385 ~ 25087292 (+)
XLOC_030081 mrpl41 coding upstream 229320 25072894 ~ 25075179 (+)
XLOC_030080 rhbdd3 coding upstream 417902 24882633 ~ 24886597 (+)
XLOC_030079 NA coding upstream 424934 24873805 ~ 24879565 (+)
XLOC_030085 NA coding downstream 1714 25311263 ~ 25314752 (+)
XLOC_030086 trpm6 coding downstream 7512 25317061 ~ 25358683 (+)
XLOC_030087 kifl coding downstream 276320 25585869 ~ 25587613 (+)
XLOC_030088 si:dkey-96l17.6 coding downstream 286685 25596234 ~ 25605668 (+)
XLOC_030089 zfand5a coding downstream 371293 25680842 ~ 25694362 (+)
XLOC_030078 NA non-coding upstream 469182 24816325 ~ 24835317 (+)
XLOC_030075 NA non-coding upstream 832423 24469471 ~ 24472076 (+)
XLOC_030074 NA non-coding upstream 853979 24340677 ~ 24450520 (+)
XLOC_030090 NA non-coding downstream 391476 25701025 ~ 25710432 (+)
XLOC_030094 dre-mir-204-1 non-coding downstream 662519 25972068 ~ 25972160 (+)
XLOC_030106 NA non-coding downstream 1170125 26479674 ~ 26481301 (+)
XLOC_030114 NA non-coding downstream 1586485 26896034 ~ 26906786 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_02922115_02925261 CARNMT1 coding CI01000339 null 2922115 ~ 2925304 (+)
bowfin (Amia calva) AMCG00010432 carnmt1,LOC107673371,LOC107599972 coding CM030129.1 CM030129.1 29515759 ~ 29524516 (+)