XLOC_030231 (aif1l)


Basic Information

Item Value
gene id XLOC_030231
gene name aif1l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 34549365 ~ 34575502 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059107
CTGCATTCCTGGCGGCCAGTGAGCGCATCACAGGGAGACCTGCGCCTCTAAATAACAGCGTGAGATTCAttccctctctctgtctctctcccgCATAACCGACGCAAGCGGCCAGCAGACGCCAGCGTCTCTCCTCTCTCCACCACCGCCTCTCGACCTTCCCAGCATGCCTTCCAACATGGACTTACAAGGCGGAAAAGCCTTCGGGTTGCTCAAAGCTCAGCAGAGGGACAAGCTGGAGGAAATCAATAAGGAGTTCATGGAAGATCAGAAGTACAGAGACGAAGAGGACTTGCCTGAAAAGCTGGATTCTTTTAAAAATAAATATGCAGAGTTTGACCTGAACGATCAAGGGGAAATCGACATGATGGGCTTGAAGCGAATGATGGAGAAGTTGGGTGTGCCAAAAACTCATCTGCAGATGAAGAAAATGATCTCTGAGGTGACAGGAGGCTGCAGTGACACCATCAACTACAGGGATTTTGTGAAAATGATGCTCGGCAAGCGATCAGCTGTTCTCAAACTGGTTATGATGTTTGAAGACAAAGCTAATGGGTCCAGCTGTAAGCCTGATGGGCCTCCACCCAAACGTGACATCACCAGCCTACCATAGACCAGTGGAGATGAATATGGTCGACGTCCCTACATTCGCAAATCCCGTCCATTTAACATTAGGGACTAGGTTTCTATAGCCTTACCTAGAAACTTTTTTTGCCAAGATCCAGGGAAAATCTTAGTTCATAGATGgtcaaactgaagaaaaaaaaaaaagtgaaagatgTTTATATATTTGCTGTGAAAAAGTCGAAGCGCAGAGTAGCTTTTTATAAGtaaacaaatgtatatatttatatgagaaGTGTTTTTGAATAGTGTTTGCAAGCACAAATCTTGTGAGTGAAGTACTAGTGAAGTTTAGTGTACTAAGTTTAAGGTTTATGGGATGACAATTAGCTTGCAAGAGATTTTGCGAATTAAGTTTGCGAAGTAAGATTTTTCATCTTTCCCCAAAGTGTGTGCTTAATTCATTCCAGTACATTAGTGTTTTCCGTATTCGCTTAAAGCGTGTTGCTAATTCTGCTCACTGTGTCTCGTAGTGTGACGTCGTAGATGTACATGAGGCTCTTTTAAAAAATTCAGTCAGTGCTCTGCTTTTCATTTAGGCTGTTCTGCTTCTGAATCCAGGATTTCTTTTGTATCGGTTCTGTACCGGAAGGTTCAAACCGAGAACGCTGGGATTTGAGTGAGTGAAGACAAAAAGGGAGAAGCGTTTGTTCCTCAAACTTTGTTCATTCTGTCTGTACCTCTTTCACTCACTCTTCACTCTTATTTTCTTGTTGATCTGTTTGTGTGCTCAAATGATTATAAGCTGTAACATTACTGTACTGTATAAGCACATTAACAGTTAAGTACATGCGTACTGTGCAGATACGCTTTGAACCACACTTTTAGGACTTGCTTTTATAAATTTACCTGCTTAAATTAGGGAGGATGTCGCTGGTCTCAGCTTTTAGTTCTGCGGGAGGGCAGGTTTTAGTCGCTAGAGGCGATTCGTTTGAAGCCACTCTTTTCAAGTGCCTCACTCAGTTTAATGTAGCCCAGGTTTTGACTGAAGATTGAGTGAAGCATCTTTGAAATGgattttatgtttgtgtgtgcgcgcgaatgTGTGCTAGAAGTTTTTATTCTGTCGAGTTGTCTTTTGAGACATTCCAAGAATGTCGTCATGTGGTGGAGTCCTTGGAAATGTTGTCATGTTTTAATCCAAGCGAACTTCAATGTTCAGCTCTGATGCAAATATTCCAGTAGTGCTTTTGTCCtctgttttttacttttttttcccacTGGCCTCATCAGCTTTTCTTTCAATAACATGTGCTTTGTAAGGAAAACAATGTGATCTCATTTTTTATATACAGAAATAAGGACATGAGTCAAAAGTAGCAGGTGTGGCTTTCACTTCCATTTCATACTTTATCTGTAATGAAATTGACTTGTTTACTTTACATATTCTGTTTTATGAGTTTTATTTCTGTGCCTCTTTTCAAGTTTatctctttaatgttttttttttcttaaatcatgTACATGTGAGTTAATGGCTGCACTGTATTGCTGTTTATTAGACTTGCCCTTTTAAAGGGTTATTAAACATCATGAATAATTTTCAGCTTATTAGTTAGCAGAggcatttgtattttttttctggaaacaCCAAAGGAAGTAAATACCCTGCTGTTACACCTGA
>TCONS_00059108
GTTTTGGGAATGATGCTTTAGCCACCGTTAAACGCGCGAAGGCTGTTTTTGTTCTGTTGGCGCGCTTGTTTGCCGTTAGCGGCCGACCGTCCTTATCTCATGCCTGCAAGTGCACCAGACAGCCTGGGTGAAGCCTCCAGACCGCTGAATAATTGCTCCCATGTCTCATTTTTCTAGGCGGAAAAGCCTTCGGGTTGCTCAAAGCTCAGCAGAGGGACAAGCTGGAGGAAATCAATAAGGAGTTCATGGAAGATCAGAAGTACAGAGACGAAGAGGACTTGCCTGAAAAGCTGGATTCTTTTAAAAATAAATATGCAGAGTTTGACCTGAACGATCAAGGGGAAATCGACATGATGGGCTTGAAGCGAATGATGGAGAAGTTGGGTGTGCCAAAAACTCATCTGCAGATGAAGAAAATGATCTCTGAGGTGACAGGAGGCTGCAGTGACACCATCAACTACAGGGATTTTGTGAAAATGATGCTCGGCAAGCGATCAGCTGTTCTCAAACTGGTTATGATGTTTGAAGACAAAGCTAATGGGTCCAGCTGTAAGCCTGATGGGCCTCCACCCAAACGTGACATCACCAGCCTACCATAGACCAGTGGAGATGAATATGGTCGACGTCCCTACATTCGCAAATCCCGTCCATTTAACATTAGGGACTAGGTTTCTATAGCCTTACCTAGAAACTTTTTTTGCCAAGATCCAGGGAAAATCTTAGTTCATAGATGgtcaaactgaagaaaaaaaaaaaagtgaaagatgTTTATATATTTGCTGT
>TCONS_00059109
TATTGTCTCGATCTGGAGGCGAGTTTGTCACGTTGGTCTGTTCACTCTCGTGGTGCTGCTAGACGCATTGTCTGGAAATATGAGTGAGGAGTTCATGGAAGATCAGAAGTACAGAGACGAAGAGGACTTGCCTGAAAAGCTGGATTCTTTTAAAAATAAATATGCAGAGTTTGACCTGAACGATCAAGGGGAAATCGACATGATGGGCTTGAAGCGAATGATGGAGAAGTTGGGTGTGCCAAAAACTCATCTGCAGATGAAGAAAATGATCTCTGAGGTGACAGGAGGCTGCAGTGACACCATCAACTACAGGGATTTTGTGAAAATGATGCTCGGCAAGCGATCAGCTGTTCTCAAACTGGTTATGATGTTTGAAGACAAAGCTAATGGGTCCAGCTGTAAGCCTGATGGGCCTCCACCCAAACGTGACATCACCAGCCTACCATAGACCAGTGGAGATGAATATGGTCGACGTCCCTACATTCGCAAATCCCGTCCATTTAACATTAGGGACTAGGTTTCTATAGCCTTACCTAGAAACTTTTTTTGCCAAGATCCAGGGAAAATCTTAGTTCATAGATGgtcaaactgaagaaaaaaaaaaaagtgaaagatgTTTATATATTTGCTGTGAAAAAGTCGAAGCGCAGAGTAGCTTTTTATAAGtaaacaaatgtatatatttatatgagaaGTGTTTTTGAATAGTGTTTGCAAGCACAAATCTTGTGAGTGAAGTACTAGTGAAGTTTAGTGTACTAAGTT

Function

symbol description
aif1l Predicted to enable actin filament binding activity and calcium ion binding activity. Predicted to be involved in actin filament bundle assembly and ruffle assembly. Predicted to colocalize with actin filament and ruffle membrane. Is expressed in several structures, including alar plate midbrain region; fin; immature eye; nervous system; and periderm. Orthologous to human AIF1L (allograft inflammatory factor 1 like).

GO:

id name namespace
GO:0097178 ruffle assembly biological_process
GO:0051017 actin filament bundle assembly biological_process
GO:0032587 ruffle membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0005884 actin filament cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0051015 actin filament binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9646 Predicted to enable actin filament binding activity and calcium ion binding activity. Predicted to be involved in actin filament bundle assembly and ruffle assembly. Predicted to colocalize with actin filament and ruffle membrane. Is expressed in several structures, including alar plate midbrain region; fin; immature eye; nervous system; and periderm. Orthologous to human AIF1L (allograft inflammatory factor 1 like).

Ensembl:

ensembl_id ENSDARG00000009336

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059107 False 2248 mRNA 0.40 6 34549365 34575502
TCONS_00059108 False 783 lncRNA 0.45 5 34549579 34574051
TCONS_00059109 True 765 mRNA 0.41 5 34549845 34574184

Neighbor

gene id symbol gene type direction distance location
XLOC_030230 lamc3 coding upstream 6885 34407763 ~ 34542480 (+)
XLOC_030229 NA coding upstream 254292 34293261 ~ 34295073 (+)
XLOC_030228 NA coding upstream 611945 33935619 ~ 33937420 (+)
XLOC_030227 ttll11 coding upstream 880405 33611951 ~ 33668960 (+)
XLOC_030226 ms4a17c.1 coding upstream 1023688 33519943 ~ 33525677 (+)
XLOC_030232 gfm2 coding downstream 2977 34578479 ~ 34600710 (+)
XLOC_030233 enc1 coding downstream 46818 34622320 ~ 34638624 (+)
XLOC_030234 NA coding downstream 67945 34643447 ~ 34797351 (+)
XLOC_030235 NA coding downstream 145635 34721137 ~ 34731442 (+)
XLOC_030236 NA coding downstream 253302 34828804 ~ 34837166 (+)
XLOC_030221 NA non-coding upstream 1210896 33332449 ~ 33338469 (+)
XLOC_030216 CR855258.1 non-coding upstream 1555474 32993786 ~ 32993891 (+)
XLOC_030213 CR925757.2 non-coding upstream 1662767 32886472 ~ 32886598 (+)
XLOC_030237 BX530075.1 non-coding downstream 344893 34920395 ~ 34921911 (+)
XLOC_030240 CR377210.1 non-coding downstream 545546 35121048 ~ 35127014 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000071_00295772_00298707 NA coding CI01000071 null 295772 ~ 298797 (+)