XLOC_003028


Basic Information

Item Value
gene id XLOC_003028
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40851137 ~ 40857097 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006123
CTGAAAGATACAGTCCTTCACACATACATTCTAACGATTATGTGCTGCGCAGTGATACTAGCCTATACCAAAACTATCGTGTTTATAGCACTGCTGGAGCTCTGTATTTGATGAATCGTCAACCAGCTGTGGAATATTTTTTGTCAACAACATTGACGTGTATGGCACACTTTTGTTCACCCTCTAATTACTCATCACCACACTTACCAACGCCTCGACTTACAGAAACTAGAGGGATCGTCGACAGAAGCACATAGGAGAACAATTGCGCCCTCTTGTGATAGTGGTGGTAAGTGCATTGATCTTGTGTAATCATGAGGCGGGAAAagattttatgaaatatttaccAGAAACATTTATTGGGGTTTTTGAGAgattatacatttttgtatttaaaattgtataaagTCATTGTAAAATCACGTGTTCTGTTCAGATGTGAGGAAGCCCAGGTTAAAGTATGGAAAGAGGGTCTCGGTGAAGGTGTCCCTGAAGGTATAGAGGTGCGTCATGCTCTCTGCGTTATAAAACGACACCAGGCCCCTCTTATAGTCCAGATAGACCCCAATCCTGGCCAGCGGCTCCTCCAGGGACAGCAGCGTTGGTGGAGACGTCCCAGCCATATACTGAACTCCATACGACAGAGAGAGCGTCCAGAAGCCGTTTGCAGGCATGGTGTTGATGACACCTTTCCTGGTGACGGATTCACGAGCGACGCCGACGGTCCAGACAGTGCTGCTGTAAACCTCCACCTCCCAGTAATGCCGGCCTTTAGTGAAGCCCTGGCCGCCCATGAGGGACAGCGCCGCGTTGAAGCGTTGAGGATTGTCCTGCACGCTGCTGTTGAAGGTCTGGTATCTCACACAGGTCAGGGAAGAGGTCAGGCTCAGCCAAGGATTCGCAGTTTTGGAGTTAAACGTGATGGCAGAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006123 True 930 lncRNA 0.48 3 40851137 40857097

Neighbor

gene id symbol gene type direction distance location
XLOC_003026 pcna coding downstream 24480 40821804 ~ 40826657 (-)
XLOC_003025 zgc:113625 coding downstream 32001 40786196 ~ 40819136 (-)
XLOC_003024 BX001050.1 coding downstream 109690 40741330 ~ 40741447 (-)
XLOC_003023 NA coding downstream 229182 40620981 ~ 40621955 (-)
XLOC_003022 taar16g coding downstream 233570 40616572 ~ 40617567 (-)
XLOC_003029 CU929265.1 coding upstream 46024 40903121 ~ 40903237 (-)
XLOC_003030 npffr1l1 coding upstream 94600 40951697 ~ 40968095 (-)
XLOC_003031 aak1b coding upstream 203642 41060739 ~ 41157135 (-)
XLOC_003032 brf2 coding upstream 421910 41279007 ~ 41302909 (-)
XLOC_003033 rab11fip1b coding upstream 461486 41318583 ~ 41352608 (-)
XLOC_003015 CR396590.4 non-coding downstream 313090 40537440 ~ 40538047 (-)
XLOC_003010 CR396590.6 non-coding downstream 330037 40520823 ~ 40521100 (-)
XLOC_003009 BX530037.3 non-coding downstream 333539 40516749 ~ 40517598 (-)
XLOC_003040 NA non-coding upstream 1125812 41982909 ~ 41986595 (-)
XLOC_003047 NA non-coding upstream 1456542 42313639 ~ 42355104 (-)
XLOC_003048 NA non-coding upstream 1613519 42470616 ~ 42473939 (-)
XLOC_003053 FP236542.2 non-coding upstream 1942018 42799115 ~ 42870149 (-)

Expression


Co-expression Network