XLOC_003030 (npffr1l1)


Basic Information

Item Value
gene id XLOC_003030
gene name npffr1l1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 40951697 ~ 40968095 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005549
CGGAGCCAAAGCGACAGTTGCGCATTGCAGCCAAAGCAAGAACAGCAGAGCGCGCTCCTCATCCGAGTGGATATATTACACGGAAGCAACAGatccgAGATGGACACAATGACCCTCAACCACTCTGCTGCCAACCTGAGCTGGCAAAACTGCACACTGTTGCCGTATTACATCCACTCGGCGGGGATGGCGGTCAGCTACATCCTCTCGTATCTGCTGGTGTTGCTGCTGTGTGTGGTGGGCAACGGGCTGGTCTGTCTGGTGGTCATCAGGAACAGAAACATGCGCTCCGTCACTAATCTCTTCATCCTCAACCTGGCCGTCAGCGACCTGCTGGTGGGCATTTTCTGCGTGCCCACCACACTGATTGACAGCCTCATCTCAGGTTGGCCTTTTAGCCAGATCACCTGCACTATGAGTAACCTGGTTCAGGGCATGTCCGTGTCTGCTTCTGTCTTCACCCTGGTTGCCATAGCAGTAGACAGATTTACAGGGATCGTCTACCCTTTCCACCACCGCCTGCGTCCGGTCACGGCCCTCTTTGCCATCGTTTTCATCTGGCTGCTCGCCTTCGCCATCATCTTTCCTTCCGCCGCCACTCTCACCGTCATCCACCTGGACGACATGTACATGGTGCAAAACGACCAGATCTACCCCCTGTTCGTGTGCTTCGAGGACTGGCCCAGGGCTGACATGCGGCGCGTCTACACCACCGTCATCTTCGTCCACGTTTACCTGGCGCCGCTCGGCCTCATCAGCATCATGTACGGCTGCATCGCAGCCAAACTCTCCAGCAACCTCCAGGAGAACCGTTTACGCTCCAGACGGAGGATGAAGGTGATAAAGATGCTAATAATGGTGGCAGTGCTCTTCATGGTGTCCTGGCTGCCGCTCTGGACACTGATGCTCCTCACGGATTATCAGGATCTGGACCGCCAGCAGATCGATTTTCTGAGCAGCTATCTGTTCCCTGTGGCGCACTGGCTGGCGTTCTTCAACAGCGGCGTCAATCCCATCATCTACGGCTTTTTCAATGAGAATTTTCGCAGGGGTTTTCAGGCCGCCGTGGCTTGTGGGTTCTGCAGTTCTGTGGCATCAGAGATGCGACACACGCATTTCGTTCTGCCACCCCCTAACAAAGTGTCCGACGGGAGTCGCGGGGTGACCAGCGGGAGGAAAGAGCGATGTTTTCCGGTGATACCTCACGGGGCGGCTCATGGGATTCAAGGGATTCTTTTGGAGGATATGAACGGGACGGTTGCTTCACACAGGGTGCTCGGAGCATGGATGGAGTGAATGGTGCAGtttagggctgaacaatacatCGGttgagcattgatattgcaatgtgtggtACATATTTATTATAGTACACATGGAATCAAAACTAAACATCGGTTTTGTTAGCTCACTTTGCAAGAAGTCTGGTCTAGATTTGGTATGAAGCTAGCACAGcaggcactggcatacagcatttGGGCCAAACggtggcaccatctttaaaggttcaggacacaatggagaacttttttttaatattaatagatgtgtgtgtgtgttgagcatcagttaagacaatgttagcacctgtcagctttaattgtggggaaaactggataattttgagcttttgtcagctaacttcagcttccgggtttaaaatgatttttggggcgggatcaaaatcggcgacgttgCGCattactgcaagtgcaatgatgaggcgtcggtttctcattattattcatagcggagttttcttatcctatgagaagagccggctgcttaattattcatgagagcacgtgctttccggaggcagacctgccagtttcaagcaagctgtgagacacagaccaacggcacgcagtagccgttcatgaaggctcgcatgtgtttgtttccatgatccacggcgtttgttgcatgttttttttccccgcgatcttgtcagggccgatcatacagcaaagctgtgtgtgtgctgcaagcattttgccgggagagcagtgcgagaactgaagaatggcggacgttgacttttatcaggagttcgttcacattcagacacatcgccgtgctgctgtgtttgcctaaatcctccagattaccagcagggttaatggttaaaatagacaggtcaggagacctgctgcactgagtctgctggatacggggattgagggagaatcctcatttatagtgtttacatgaacacacttatctttataatgatataaattatggttatgtgtatatgaaattacgaataacaaatgtagcagggcattaaattactgtttatttctttgcattttaactttgtgaactataaactcatgcgtctcctcacggtttgtctcattttgtgagctaactgtcaacaacagttcgctccccttctcccctgctggccacgcccactcctgcccgatgctcgcggagctccacgcccattaatcatgcatctttttaaaaaattctgaagtagactttaaccgaaagtggggggtgtcatggccctttaaggcggtgtaaatgttacatttagtttaaatttttcCTCCATTTAGTAATTTTGCTTCATGCAGTGAATGCCATTCAGCTTGAAAGACAATTAAATACGAGCACTTTTCATATCTGAGCAcctttttgttgttaaaaatttATTCTGAATGGTGTTTAACAGATACACTATTTTGTAAAGTAAAAGGAACTAAGTTAGGAACTAACAAAAGGAACCAACTGCTGTGCCTGCATAGAGAAggaacattaaaatgaatgttaaaaatgtcTAGAAAAAGAGAAATTCTTAATCAGAAGTAGAAGGTCTCGTATTGTGGTTACGCAAGGATTTTGCAGATGCATCCTCATATTCCATATTTAAATTCCCTGTTGCAtctggaaatgaaaaaaatccagAGGGCGTAAACTTTGCATGCAAATGAAGCCCACCTGGAGTTGCAGTGTGACatttaataacttgcctaaaggGTCCATCCTGAAGTGCCACTCAGAAATAACAATAGCAGACACAGAAACAGATGTTCCACATGTCCGGGAACAAATTAATTCAAAAGGGCAATCTGAAGGATTCTGTGCTCATGCATTAAATTGtacatatttgaaaagaaaagagACGTTTTCCAGAGTTGTGCATTTAATACAGGGTTGAAGCGAGATCAGACCAAAGGT
>TCONS_00005550
ATGGACACAATGACCCTCAACCACTCTGCTGCCAACCTGAGCTGGCAAAACTGCACACTGTTGCCGTATTACATCCACTCGGCGGGGATGGCGGTCAGCTACATCCTCTCGTATCTGCTGGTGTTGCTGCTGTGTGTGGTGGGCAACGGGCTGGTCTGTCTGGTGGTCATCAGGAACAGAAACATGCGCTCCGTCACTAATCTCTTCATCCTCAACCTGGCCGTCAGCGACCTGCTGGTGGGCATTTTCTGCGTGCCCACCACACTGATTGACAGCCTCATCTCAGGTTGGCCTTTTAGCCAGATCACCTGCACTATGAGTAACCTGGTTCAGGGCATGTCCGTGTCTGCTTCTGTCTTCACCCTGGTTGCCATAGCAGTAGACAGATTTACAGGGATCGTCTACCCTTTCCACCACCGCCTGCGTCCGGTCACGGCCCTCTTTGCCATCGTTTTCATCTGGCTGCTCGCCTTCGCCATCATCTTTCCTTCCGCCGCCACTCTCACCGTCATCCACCTGGACGACATGTACATGGTGCAAAACGACCAGATCTACCCCCTGTTCGTGTGCTTCGAGGACTGGCCCAGGGCTGACATGCGGCGCGTCTACACCACCGTCATCTTCGTCCACGTTTACCTGGCGCCGCTCGGCCTCATCAGCATCATGTACGGCTGCATCGCAGCCAAACTCTCCAGCAACCTCCAGGAGAACCGTTTACGCTCCAGACGGAGGATGAAGGTGATAAAGATGCTAATAATGGTGGCAGTGCTCTTCATGGTGTCCTGGCTGCCGCTCTGGACACTGATGCTCCTCACGGATTATCAGGATCTGGACCGCCAGCAGATCGATTTTCTGAGCAGCTATCTGTTCCCTGTGGCGCACTGGCTGGCGTTCTTCAACAGCGGCGTCAATCCCATCATCTACGGCTTTTTCAATGAGAATTTTCGCAGGGGTTTTCAGGCCGCCGTGGCTTGTGGGTTCTGCAGTTCTGTGGCATCAGAGATGCGACACACGCATTTCGTTCTGCCACCCCCTAACAAAGTGTCCGACGGGAGTCGCGGGGTGACCAGCGGGAGGAAAGAGCGATGTTTTCCGGTGATACCTCACGGGGCGGCTCATGGGATTCAAGGGATTCTTTTGGAGGATATGAACGGGACGGTTGCTTCACACAGGGTGCTCGGAGCATGGATGGAGTGAATGGTGCAGtttagggctgaacaatacatCGGttgagcattgatattgcaatgtgtggtACATATTTATTATAGTACACATGGAATCAAAACTAAACATC

Function

symbol description
npffr1l1 Predicted to enable G protein-coupled receptor activity and peptide binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within neuropeptide signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human NPFFR1 (neuropeptide FF receptor 1).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008188 neuropeptide receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0042277 peptide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091118-18 Predicted to enable G protein-coupled receptor activity and peptide binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within neuropeptide signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human NPFFR1 (neuropeptide FF receptor 1).

Ensembl:

ensembl_id ENSDARG00000054203

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005549 False 3195 mRNA 0.47 4 40951697 40968095
TCONS_00005550 True 1297 mRNA 0.54 3 40953496 40964739

Neighbor

gene id symbol gene type direction distance location
XLOC_003027 bmp1b coding downstream 11991 40848354 ~ 40939706 (-)
XLOC_003029 CU929265.1 coding downstream 48460 40903121 ~ 40903237 (-)
XLOC_003028 NA coding downstream 94600 40851137 ~ 40857097 (-)
XLOC_003026 pcna coding downstream 125040 40821804 ~ 40826657 (-)
XLOC_003025 zgc:113625 coding downstream 132561 40786196 ~ 40819136 (-)
XLOC_003031 aak1b coding upstream 92644 41060739 ~ 41157135 (-)
XLOC_003032 brf2 coding upstream 310912 41279007 ~ 41302909 (-)
XLOC_003033 rab11fip1b coding upstream 350488 41318583 ~ 41352608 (-)
XLOC_003034 gpat4 coding upstream 394295 41362390 ~ 41400049 (-)
XLOC_003035 cabp1b coding upstream 441160 41409255 ~ 41450454 (-)
XLOC_003024 BX001050.1 non-coding downstream 210250 40741330 ~ 40741447 (-)
XLOC_003023 NA non-coding downstream 329742 40620981 ~ 40621955 (-)
XLOC_003015 CR396590.4 non-coding downstream 413650 40537440 ~ 40538047 (-)
XLOC_003040 NA non-coding upstream 1014814 41982909 ~ 41986595 (-)
XLOC_003047 NA non-coding upstream 1345544 42313639 ~ 42355104 (-)
XLOC_003048 NA non-coding upstream 1502521 42470616 ~ 42473939 (-)
XLOC_003053 FP236542.2 non-coding upstream 1831020 42799115 ~ 42870149 (-)
XLOC_003057 CU326366.3 non-coding upstream 1943838 42911933 ~ 42912047 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000158_00234248_00237084 NPFFR1L1 coding CI01000158 null 233777 ~ 237084 (-)