LOC118938642


Basic Information

Item Value
gene id LOC118938642
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 57981197 ~ 58002323 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035849.1
tacctggttgatcctgccagtagcatatgcttgtctcaaagattaagccatgcaagtctaagtacacacggccggtacagtgaaactgcgaatggctcattaaatcagttatggttcctttgatcgctccaacgttacttggataactgtggcaattctagagctaatacatgccaacgagcgctgacctccggggatgcgtgcatttatcagatccaaaacccatgcgggccaatctcggttgccccggccgctttggtgactctagataacttcgagccgatcgcgcgccctttgtggcggtgacgtctcattcgaatgtctgccctatcaactttcgatggtactttctgtgcctaccatggtgaccacgggtaacggggaatcagggttcgattccggagagggagcctgagaaacggctaccacatccaaggaaggcagcaggcgcgcaaattacccactcccgactcggggaggtagtgacgaaaaataacaatacaggactctttcgaggccctgtaattggaatgagtacactttaaatcctttaacgaggatccattggagggcaagtctggtgccagcagccgcggtaattccagctccaatagcgtatcttaaagttgctgcagttaaaaagctcgtagttggatctcgggatcgagctggcggtccgccgcgaggcgagctaccgcctgtcccagcccctgcctctcggcgccccctcgatgctcttaactgagtgtcccgcggggtccgaagcgtttactttgaaaaaattagagtgttcaaagcaggcccggtcgcctgaataccgcagctaggaataatggaataggactccggttctattttgtgggtttttcttctgaactggggccatgattaagagggacggccgggggcattcgtattgtgccgctagaggtgaaattcttggaccggcgcaagacggacgaaagcgaaagcatttgccaagaatgttttcattaatcaagaacgaaagtcggaggttcgaagacgatcagataccgtcgtagttccgaccataaacgatgccaactagcgatccggcggcgttattcccatgacccgccgggcagcgtccgggaaaccaaagtctttgggttccggggggagtatggttgcaaagctgaaacttaaaggaattgacggaagggcaccaccaggagtggagcctgcggcttaatttgactcaacacgggaaacctcacccggcccggacacggaaaggattgacagattgatagctctttctcgattctgtgggtggtggtgcatggccgttcttagttggtggagcgatttgtctggttaattccgataacgaacgagactccggcatgctaactagttatgcggccccgagcggtcggcgtccaacttcttagagggacaagtggcgttcagccacacgagattgagcaataacaggtctgtgatgcccttagatgtccggggctgcacgcgcgccacactgagcggatcagcgtgtgtctacccttcgccgagaggcgtgggtaacccgatgaaccccactcgtgatagggattggggattgcaattatttcccatgaacgaggaattcccagtaagcgcgggtcataagctcgcgttgattaagtccctgccctttgtacacaccgcccgtcgctactaccgattggatggtttagtgaggtcctcggatcggccccgctgaggtcggtcacggccctggcggagcgccgagaagacgatcaaacttgactatctagaggaagtaaaagtcgtaacaaggtttccgtaggtgaacctgcggaaggatcatta
>TU1358105
ggcgggcatgaaggtcaggtatagctttaaatgcattttgaacagttttataatttttgggtgaccaggtgcacacggtccatttgggtgaccaggtgcacgccggcttttgggtgaccaggtgcacacggttcttttgggtgaccaggtgcacgccggcctttgggtgaccaggtgcacatggtccttttgggtgaccaggtgcacatggtcctttgggtgaccaggtgcacgccggcctttgggtgaccaggtgcacatggttcttttgggtgaccaggtgcacgccggcctttgggtgaccaggtgcacgccggcctttgggtgaccaggtgcacgccggcctttgggtgaccaggtgcacgccggcctttgggtgaccaggtgcacatggtccttttgggtgaccaggtgcacgccggcctttgggtgaccaggtgcacatggtccttttgggtgaccaggtgcacatggtcctttgggtgaccaggtgcacgccggcctttgggtgaccaggtgcacgccggcctttgggtgaccaggtgcacatggtccttttgggtgaccaggtgcacgccggcctttgggtgaccaggtgcacgccggcctttgggtgaccaggtgcacacggtccttttgggtgaccaggtgcacatggtcctttgggtgaccaggtgcacgccggtccttttgggtgaccaggtgcacaagttccatttgggtgaccaggtgcacaagttccatttgggtgaccaggtgcacgcggttcataacagcgcggttatctgctttaatgtccgaggaggggtgcttaagtgtgggtgccctggttcacctggtatgcgaggttgtggaggtggggggggtcccctgctggtatcatccccgaaatagaggggtgatacccgggtggtgagtaagggcctacaagcctggaggtcaatagctccagggggtaagctctactgtcatgtccgtaaatagagtggtgttacccgggttttgaaccatattttaatttttgggttaccagatgcacacgggtcttttggaaaacaatcacaatctgcatccatcgtaatatcttaaactgtatataaatcacctaaggacgggcctgaccgagagagggccgtagtagggtactcccctagcgggctatatcaatagaatgaccggtaaaatgatttaaaacagttttacaatttttgggttaccagatgcacacgggtcttttggaaaacaatcacaatctgcatccatcgtaatatttaaaactgtccataaagcactgaaggacgggcctgaccgagagagggctgtagtagggtactcccctagcgggctatatcaatagaatgaccggtaaaatgatttaaaacccttttataatttttgggttaccagatgcacgttttcaatcaccagttgcacggaggattaatagcaatctgcatccatcgtgatttcttaaagtgtctaaaaagcactcaaggacggccctgacagagagagggccgtagtggggcactcccctagcgggctatatcaatagaatgacgggtaaaagtatttaaaaccgttttataatttttgggttaccagatgcacgttttcaatcaccaggtgcacggaggaaaatgagcatttgcatccatagtcatgtcttaaaccgtccataaagcactcttggccggccccggcagagagagaaagagatggtggaaaaaaaaaaaaatcatcatcagaccttccataaataattcgggccggcccccattgctaaaggtccgtagtagggtgcgccataagcggacatgaatagatggaacaccgctaaccgcatagagaaccgtgttttgggtgaccaggtgcacgttttcaatcaccagttgcacattttcaatcaccagttgcacggaggattaatagcaatctgcatccatcgcgatttcttaaagtgtctataaagcactcaggacggccccgaccgagacagggccttagtggggtgctcccatagcgggcaacaatgagaggggtgcctttaaattcattttgaaccatatttgaaattttgggttaccagatgcacgttttcaatcaccagttgcacggaggattaatagcaatctgcatccatcgtgatttcttaaagtgtctaaaaagcactcaaggacggccctgacagagagagggccgtagtggggcactcccctagcgggctatatcaatagaatgacgggtaaaagtatttaaaaccgttttataatttttgggttaccagatgcacgttttcaatcaccaggtgcacggaggaaaatgagcatttgcatccatagtcatgtcttaaaccgtccataaagcactcttggccggccccggcagagagagaaagagatggtggaaaaaaaaaaaaatcatcatcagaccttccataaataattcgggccggcccccattgaaaaggtccgtagtagggtgcatcattatcggacatgaatctcgggaacaccgctaaccgcatagagaaccgtgttttgggttaccagatgcacgttttcaatcaccagttgcacggagagagaaaaaaaaaatcataccttccataaataattcggaccggcccccattgaaaaggtccgtagtagggtgcatcattatcggacatgaatctcgggaacaccgctaaccgcatagagaaccgtgttttgggttaccagatgcacgttttcaatcaccagttgcacggagaaaaaaaaagtaatcataccttccataaataattcaggccggcccccattgaaaaaggtccgtagtagggtgcatcattatcggacatgtatatctgtaacaccggcaagcgcattgagaaccgcatttttgggttaccagatgcacgttttcaatcaccaggtgcacggctgtgaaaagtgggactctgtcattttttcgaccaatttctgtaattttcaaaaaatgattaaaaatacttcccgaagggctagaggtcccaaatttcgtctcataccctctctcgtgatgggcaacaattacataatgtaaaaaaaaattcgcatccacaggaacctatgcatcctgtgaaattcacttttttcccaaaacttgaaacacgatttcctattaaaatgttttatacaaaaacgtttttaattgaatgtaaatgctcgtctatttatgcactttcgtgcaaaaaaaaccccatcaagatcggatgtgtactttttgatttatcacgtttttgttgaatttgacccccgatggtggggcgcacagaagccctgtgaggttcagggcttcatcgatatttggcctgttttggattacacactcagtggcgggtcgaccagacaggtaccggcgcgatttcagaaacctggtttttggcaacaggacttccatgtcctagagagacgggggtggtgtcaaactgctcagtccgaatagaaaatgagtaacggacagttttgagggaagtcagaccctcagaaccatggtactttggacattttcccgccggcgaccgatttagtggtttgaccagacccttcggcgcccgatgtgtcctaacttttgatccacgttgcccagcttggtggtgggaggatattgagccttgtcctgggcaggtgctctatcccagctatcaccttgtgggtttggttcatccaatgaccatggttcttgtccaatgaaggtgcccgtcccttcggcgaccgattggtggtagtttagccctggtgagggctatctctccagtccagtcccacacttgtttcacgatgcgtctccatggttctcccctgttgtccagccagtttaatttcctctgactgatttgcattcgtattccacctgggagggcctctatcggccggcctttgggctggtgttctgatggatgttccctcccgacccaagtggatttgcctctatcaggggagcccctttcggaatcggtttaccccgatttcgatacgctccagctgcgcaccgtcggtacgagatccagccgtactgtctcaccaagtggtcctacattggtgttccggtgcggggagtggctcactcatggctgcgaagcatgtggtgatggtcatcccgtaacgcatcggcgccagaaacacgtattctcaaaccctgtcttaaacgtggacctacccggttgacccaagtggtctgtcccaaccgaggttgtggttcctttttgcccagttgatggcgttccgaatagacgctccagctagacaagatacctctcgagcggcgcccaggcacctgtggctccggccatgggcagttcagggcctcccgctgggcgcacggtggattgcgccagggcctcctcccctgacgggataggaccggtccctggttgttctttgcttagtgcgaccaggtacaacatctacgttgtgagtggctacctggttgatcctgccagtagcatatgcttgtctcaaagattaagccatgcaagtctaagtacacacggccggtacagtgaaactgcgaatggctcattaaatcagttatggttcctttgatcgctccaacgttacttggataactgtggcaattctagagctaatacatgccaacgagcgctgacctccggggatgcgtgcatttatcagatccaaaacccatgcgggccaatctcggttgccccggccgctttggtgactctagataacttcgagccgatcgcgcgccctttgtggcggtgacgtctcattcgaatgtctgccctatcaactttcgatggtactttctgtgcctaccatggtgaccacgggtaacggggaatcagggttcgattccggagagggagcctgagaaacggctaccacatccaaggaaggcagcaggcgcgcaaattacccactcccgactcggggaggtagtgacgaaaaataacaatac

Function

NR:

description
plasminogen, partial

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0060071 Wnt signaling pathway, planar cell polarity pathway biological_process
GO:0042074 cell migration involved in gastrulation biological_process
GO:0021535 cell migration in hindbrain biological_process
GO:0014812 muscle cell migration biological_process
GO:0001756 somitogenesis biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0000902 cell morphogenesis biological_process
GO:0003401 axis elongation biological_process
GO:0055002 striated muscle cell development biological_process
GO:0035844 cloaca development biological_process
GO:0045813 positive regulation of Wnt signaling pathway, calcium modulating pathway biological_process
GO:0000132 establishment of mitotic spindle orientation biological_process
GO:0044782 cilium organization biological_process
GO:0060972 left/right pattern formation biological_process
GO:0001839 neural plate morphogenesis biological_process
GO:0001841 neural tube formation biological_process
GO:0097475 motor neuron migration biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0030903 notochord development biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035849.1 False 1836 mRNA 0.53 1 57981197 57983032
TU1358105 True 4947 lncRNA 0.50 3 57982531 58002323

Neighbor

gene id symbol gene type direction distance location
LOC118938561 NA coding downstream 571 57980473 ~ 57980626 (-)
LOC118938644 NA coding downstream 1099 57976168 ~ 57980098 (-)
LOC118938640 NA coding downstream 11089 57968273 ~ 57970108 (-)
LOC118938684 NA coding downstream 13495 57967549 ~ 57967702 (-)
LOC110486920 LOC106606537 coding downstream 25584 57897166 ~ 57955613 (-)
LOC118938645 NA coding upstream 6060 57989092 ~ 57994514 (-)
LOC118938562 NA coding upstream 11857 57994889 ~ 57995042 (-)
LOC118938643 NA coding upstream 12581 57995613 ~ 57997448 (-)
LOC110486937 LOC106606542 coding upstream 259475 58242507 ~ 58274289 (-)
iqck LOC106606545 coding upstream 369695 58352727 ~ 58371333 (-)
G1190635 NA non-coding downstream 5347 57972296 ~ 57975850 (-)
G1190664 NA non-coding downstream 16442 57963997 ~ 57964755 (-)
G1190651 NA non-coding downstream 41964 57938974 ~ 57939233 (-)
G1190649 NA non-coding downstream 45997 57934303 ~ 57935200 (-)
G1190644 NA non-coding downstream 55303 57925565 ~ 57925894 (-)
G1190631 NA non-coding upstream 19440 58002472 ~ 58003900 (-)
G1190674 NA non-coding upstream 26718 58009750 ~ 58010072 (-)
G1190678 NA non-coding upstream 28358 58011390 ~ 58011685 (-)
G1190693 NA non-coding upstream 63816 58046848 ~ 58047083 (-)
LOC110486915 LOC106606556 other downstream 274407 57698059 ~ 57706813 (-)
G1190405 NA other downstream 482042 57495988 ~ 57499155 (-)
G1190199 LOC106601813 other downstream 891282 57089171 ~ 57089915 (-)
LOC110486894 LOC106601810 other downstream 895726 57054453 ~ 57085521 (-)
G1189660 LOC106601786 other downstream 1306959 56670293 ~ 56674238 (-)
LOC110514412 NA other upstream 604293 58561680 ~ 58588526 (-)
LOC110486955 NA other upstream 613744 58588778 ~ 58603975 (-)
G1191298 LOC106606554 other upstream 776691 58759723 ~ 58762086 (-)
G1191335 NA other upstream 885031 58868063 ~ 58868971 (-)
G1192082 NA other upstream 923121 58906153 ~ 58909232 (-)
LOC110486946 LOC106601863 coding upstream 370346 58372669 ~ 58426053 (-)
LOC110538558 LOC106606549 coding upstream 452020 58454343 ~ 58499967 (-)
LOC110538556 LOC106606549 coding upstream 502427 58504750 ~ 58507829 (-)
G1190694 NA non-coding upstream 44791 58047114 ~ 58047427 (-)

Expression


Co-expression Network