XLOC_003036 (ggt1b)


Basic Information

Item Value
gene id XLOC_003036
gene name ggt1b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 41624711 ~ 41664427 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005565
AACAAAAACTCACCTGTAGTTGTGAAAAGCTTACTAGAGTGTTTTTTTTCTTGAGTCATCCTCTGGCACGTGTGGATTTAACACCACCACAGCCTGTGCCCTTTTCACCTGTGTTAATAAAACAGTTATGGGTGATTCGACTGGGAGTTACGGTTAAAGTTTGATGGCCATTAGAGTTAGACATTGAGAGGGTTTACAGCGTTGTCTCAGTCAGATAGAAGATCTTCAGACTTTGAGGAGGCCTGTGAAGTCTACAGGAAAATGGTGCAGAAGTCGACAGTTGCGGGTCTTGTTCTGCTGCTGCTGGCTGCCGTCGGGACGTTTCTGGCCGTTTTCTTTTCAGTGCAGGGTAAAAAGGCTTCGTCTGATCCAGAATCGGGCTTCTTCAAGGCAGCAGTGGCCACAGATGCTGGAACATGTTCAGAGATCGGCAGGGACGTCTTGAAGAAAGGAGGATCGGCTGTAGATTCTGCCATCGCTGCGCTGCTGTGTGCGGGACTGATGAATGCCCACAGCATGGGCATCGGAGGAGGCCTTTTCTTCACTATTTATGATGCCAAAACAGGAAAAGCTGAAACCATCAATGCTCGTGAGACAGCCCCTGCTAACGCCACCAGAGACATGTTTGGAAATAGTACAGAGCTTTCCCAGAAAGGTGGTTTGTCCATCGCTGTTCCTGGAGAGATTCGAGGATATGAAATGGCCCATAGACGGCATGGCAGACTTCCATGGAAAGAGCTGTTTTTACCCAGCATTAAACTGGCCAGAGATGGTTTCCCTGTCGGCCGCGCACTGGCCAGCGCCATCAGATCAAATCGAAATAACATACTGGAGGATAAGATGTTATGCTCTGTGTTCTGCAACTCCACCGGAAACATCCTCCAGGAAAACGACACCATCACCTTTACTAAACTGGCCGACACGTATGAGGCCATCGCAGAGCAGGGGCCTGAAGCCTTTTACAGCGGAGCCCTTGCAGAGAGCCTTGTCAGGGACATCCAAGATGCAGACGGGATCATAACTCTGGCGGACTTGAGAGATTATAGGGCTTTGCTGGATGAATATCCTCCTACTGCTTCTGTGGGTGAATTTACTATGGTGACACCAGACGCTCCGTCCAGCGGTCCAGTGCTTACACTCATGCTGAATATCCTCAGTGGTTATTCCTTAAGTCCAGACAGTGTCTCCTCCACTGAGAAGAAAATCCTCACTTATCATCGGGTAGTAGAGGCATTTCGTTTCGCCTATGCTAAGAGGAGCGTCTTGGGGGATCCGCAGTTCCTCAACATCTCTGACTTCATCCAGAACATCACCTCCAAAGGCTACGCTGACATGATCCGCCTCAAGATCACAGATAACAGCACGCAGCAGGAGAGCTACTACGAGCCCGAGTTTTACCTTCCCGAAAACTACGGTACATCACATGTGTCGGTGGTGGCGGAGGACGGCAGTGCGGTCGCCGCTACCAGCACCATCAATACATACTTTGGCTCAAAGTTGATGTCAAAGTCGACAGGTATTTTACTGAACAACGAGATGGACGACTTCAGCTCTCCGTTGATCACCAACAACTTTGGAGTTCCTCCTTCTCCAAACAACTTCATTGTCCCAAATAAAAGGCCCATGTCTTCAATGTGTCCTGCAATCCTGCTGGACAAAAACAATCAGGTTAAGATGGTGGTGGGAGCATCTGGAGGGACAAAGATCACCACAGCAGTGGCTCAGGTGGTATTAAACACTCTGTTCTTCCAATACGATCTGAAGAAAGCAATAGCAGAAGCAAGAGTTCACAATCAGCTCAGTCCAAACACCACGCAGGTGGAGCAGAGCTTTGACAAGGCTGTTTTGGAGGGTCTTGCTGAGAAGAATCATTTCACAGAAGTCTTCACTTCTATGGGCGCAGTGGTTCAGGCTGTAGCACGGTACAGTGAGGGTCTCAGCGCTGAGTCAGACCCCCGAAAGGGAGGATACGCAGCCGGATACTAACATCCAGATGTCCAGTTCAGCCGGAGGCAATGAAGACTCTGCTTTTAGACCCGgaggatgcttttttttttgactcCCATGCTGCTCTCAAACAACCAAGTGCCTCTATCAGAGATCCGACAGGCCAGTATGCATAAACTCTTGTGGTCTTAAGCTCTGCACACTCCACCTTTAGTGAATCTTCAGGGAAAACTTGATTTTGAATTAGTGTTGTGCAATATTTATTGTCTAGAATGCACGACCGAattttgtttgaatgttttaattaTGTGCGATCTGACTCTCACACTGTGAAAAAAGTccttaaataagcagttttctttattgtgtgattcatgtttttatttttttatttatttctgcttttcaaTTATATTATGTGACCTTGAAAAGTTGATAAAAATGACttgtattaacatttttaatagtttaaagcagtggttctcaaactattttcaccaagtaccacctcaaaaaaaaaa

Function

symbol description
ggt1b Predicted to enable glutathione hydrolase activity and peptidyltransferase activity. Predicted to be involved in several processes, including peptide metabolic process; response to estradiol; and response to tumor necrosis factor. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in gamma-glutamyl transpeptidase deficiency. Orthologous to several human genes including GGT1 (gamma-glutamyltransferase 1).

GO:

id name namespace
GO:0032355 response to estradiol biological_process
GO:0007283 spermatogenesis biological_process
GO:0050727 regulation of inflammatory response biological_process
GO:0006751 glutathione catabolic process biological_process
GO:0002682 regulation of immune system process biological_process
GO:0034612 response to tumor necrosis factor biological_process
GO:0032496 response to lipopolysaccharide biological_process
GO:0031179 peptide modification biological_process
GO:0005886 plasma membrane cellular_component
GO:0000048 peptidyltransferase activity molecular_function
GO:0036374 glutathione hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110408-13 Predicted to enable glutathione hydrolase activity and peptidyltransferase activity. Predicted to be involved in several processes, including peptide metabolic process; response to estradiol; and response to tumor necrosis factor. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in gamma-glutamyl transpeptidase deficiency. Orthologous to several human genes including GGT1 (gamma-glutamyltransferase 1).

Ensembl:

ensembl_id ENSDARG00000018342

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005565 True 2468 mRNA 0.47 13 41624711 41664427

Neighbor

gene id symbol gene type direction distance location
XLOC_003035 cabp1b coding downstream 174257 41409255 ~ 41450454 (-)
XLOC_003034 gpat4 coding downstream 224662 41362390 ~ 41400049 (-)
XLOC_003033 rab11fip1b coding downstream 272103 41318583 ~ 41352608 (-)
XLOC_003032 brf2 coding downstream 321802 41279007 ~ 41302909 (-)
XLOC_003031 aak1b coding downstream 467576 41060739 ~ 41157135 (-)
XLOC_003037 kdm2bb coding upstream 161904 41826331 ~ 41907213 (-)
XLOC_003038 morn3 coding upstream 262461 41926888 ~ 41940302 (-)
XLOC_003039 rhof coding upstream 305001 41969428 ~ 41980797 (-)
XLOC_003040 NA coding upstream 318482 41982909 ~ 41986595 (-)
XLOC_003041 car15 coding upstream 362858 42027285 ~ 42039169 (-)
XLOC_003029 CU929265.1 non-coding downstream 721474 40903121 ~ 40903237 (-)
XLOC_003028 NA non-coding downstream 767614 40851137 ~ 40857097 (-)
XLOC_003024 BX001050.1 non-coding downstream 883264 40741330 ~ 40741447 (-)
XLOC_003023 NA non-coding downstream 1002756 40620981 ~ 40621955 (-)
XLOC_003015 CR396590.4 non-coding downstream 1086664 40537440 ~ 40538047 (-)
XLOC_003047 NA non-coding upstream 649212 42313639 ~ 42355104 (-)
XLOC_003048 NA non-coding upstream 806189 42470616 ~ 42473939 (-)
XLOC_003053 FP236542.2 non-coding upstream 1134688 42799115 ~ 42870149 (-)
XLOC_003057 CU326366.3 non-coding upstream 1247506 42911933 ~ 42912047 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000158_00522039_00535779 NA coding CI01000158 null 521745 ~ 535804 (-)