XLOC_003039 (rhof)


Basic Information

Item Value
gene id XLOC_003039
gene name rhof
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 41969428 ~ 41980797 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005569
AGATCTGAAAGTATATGTGAAAACAGTCACATggtttaacaagaaaaaaaagagcaagaGGAGGAGGAAGTGTGGACCGGATGACAGCATGCTTACCTGCCAGACTTTATTCTCCCCAATGAGTTCACCTGACGCTTCTGAGGATTTGGGCACCTGTTGGAGAATCTGACCGGCCGGTGGACATGACACAGAACGGCACTGTAGCCGGTAATGGCACACACGCTGATGCGCTCAAAATCGTGATCGTCGGGGATGGAGGATGCGGGAAAACATCCTTACTTATGGTGTACGCCAAAGGAGACTTTCCTGAGaaatatgCTCCATCTGTGTTCGACAAATATGTCACCACCGTGTCATACGGAGGGAAGGACATCCAGCTGAATCTCTACGATACAGCAGGCCAGGAGGACTACGATCGCTTGAGGCCTCTGTCGTATCAGGACGTAAACATTGTTCTCATCTGCTACGATGTGACCAATCCAACGTCATTCGACAATGTCAAGATAAAGTGGTACCCAGAAGTTCGTCATTTCTGCCGTGACGCCCCTATTATACTGATAGGCTGCAAGACGGACCTGCGAAAGGACAAGGAGAAGATGAGGAGGCTCAAAGCTTTAGATCAGGCGCCCATCACCTACCTCCTGGGTGAACAGACGCAAAAGGAAATGAACGCTGAGATTTACTTGGAGTGTTCGGCTAAATATAGAGAAAACGTCGAGGACATTTTCAGAGAAGCAACAAAGCGAGCGCTAGCAGCCAGAGCTAAAGCCAGACATCGCAGCAAGAAGAAGAAACACTGCACAGTTTTGTGACCTTTCCTGGAAGACATGCATACATTTTGTATATTCAAACTATGATATGTTATAAACATTCAGGAATCATCTGCAGAGCTTCCGGGAATGTTTAAGACTTCTTGAAggaatattttcaagacactgaGTGCGTGTTTTCAATCTACCCACCTAGCAAGACATACTGTTTGACAGAGATCACCACTGTGTGCACGAGATATGTTTGTTACGATCCACTCCACATATTTTTCTGGTGGTGGTTTCCTCATTTGACTTAATGGAGTTTTATCTTCCATGTTGATCATGGAGATGAAAAAACTGCTGCTGATGTCTCAGGGATGGCCAAACGCATATTAGATGGTCGTATTGTAAGTTTGGTTATAATTGGTGTGATTTATAATGCACACCGCTATTATTATGCACTTGGTGTAACATGTTTCTGCAGTATAAGTCATGCACCAAAGTATTTAACGTTAATTGTTGAGTTAAGACCTGTTCACACCAAGAACTATAACTATACTGTCAACAACAAAGTTTTAAAATTTGGTATTTACGTCACTGATTAATGCCAGCAGACCATGCCAGAATATGCATCTTATTTTTGTAGTGTGTATGCTATTTGATTTGAAAGACCACATAAAATTGTACGTAACAATT
>TCONS_00005570
CAAGTTTTTCCACTCAGCAGTTTCTGCCTACGCCTTGATTTGCTTCTTGTTAAAACACACACTTTTcatgcatcatcatcatccattatgcttgatgtttaacagaaatatgCTCCATCTGTGTTCGACAAATATGTCACCACCGTGTCATACGGAGGGAAGGACATCCAGCTGAATCTCTACGATACAGCAGGCCAGGAGGACTACGATCGCTTGAGGCCTCTGTCGTATCAGGACGTAAACATTGTTCTCATCTGCTACGATGTGACCAATCCAACGTCATTCGACAATGTCAAGATAAAGTGGTACCCAGAAGTTCGTCATTTCTGCCGTGACGCCCCTATTATACTGATAGGCTGCAAGACGGACCTGCGAAAGGACAAGGAGAAGATGAGGAGGCTCAAAGCTTTAGATCAGGCGCCCATCACCTACCTCCTGGGTGAACAGACGCAAAAGGAAATGAACGCTGAGATTTACTTGGAGTGTTCGGCTAAATATAGAGAAAACGTCGAGGACATTTTCAGAGAAGCAACAAAGCGAGCGCTAGCAGCCAGAGCTAAAGCCAGACATCGCAGCAAGAAGAAGAAACACTGCACAGTTTTGTGACCTTTCCTGGAAGACATGCATACATTTTGTATATTCAAACTATGATATGTTATAAACATTCAGGAATCATCTGCAGAGCTTCCGGGAATGTTTAAGACTTCTTGAAggaatattttcaagacactgaGTGCGTGTTTTCAATCTACCCACCTAGCAAGACATACTGTTTGACA

Function

symbol description
rhof Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including cytoskeleton organization; regulation of actin cytoskeleton organization; and regulation of cell shape. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and cytoskeleton. Is expressed in macrophage and yolk syncytial layer. Orthologous to human RHOF (ras homolog family member F, filopodia associated).

GO:

id name namespace
GO:0016477 cell migration biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0007015 actin filament organization biological_process
GO:0030865 cortical cytoskeleton organization biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0008360 regulation of cell shape biological_process
GO:0007163 establishment or maintenance of cell polarity biological_process
GO:0042995 cell projection cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005938 cell cortex cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0031982 vesicle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0019901 protein kinase binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-050522-280 Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including cytoskeleton organization; regulation of actin cytoskeleton organization; and regulation of cell shape. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and cytoskeleton. Is expressed in macrophage and yolk syncytial layer. Orthologous to human RHOF (ras homolog family member F, filopodia associated).

Ensembl:

ensembl_id ENSDARG00000054389

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005569 False 1448 mRNA 0.43 5 41969428 41980797
TCONS_00005570 True 779 processed_transcript 0.44 4 41969891 41979664

Neighbor

gene id symbol gene type direction distance location
XLOC_003038 morn3 coding downstream 29126 41926888 ~ 41940302 (-)
XLOC_003037 kdm2bb coding downstream 62215 41826331 ~ 41907213 (-)
XLOC_003036 ggt1b coding downstream 305001 41624711 ~ 41664427 (-)
XLOC_003035 cabp1b coding downstream 518974 41409255 ~ 41450454 (-)
XLOC_003034 gpat4 coding downstream 569379 41362390 ~ 41400049 (-)
XLOC_003040 NA coding upstream 2112 41982909 ~ 41986595 (-)
XLOC_003041 car15 coding upstream 46488 42027285 ~ 42039169 (-)
XLOC_003042 dgcr2 coding upstream 63423 42044220 ~ 42087230 (-)
XLOC_003043 ess2 coding upstream 108470 42089267 ~ 42108137 (-)
XLOC_003044 stambpa coding upstream 130491 42111288 ~ 42131408 (-)
XLOC_003029 CU929265.1 non-coding downstream 1066191 40903121 ~ 40903237 (-)
XLOC_003028 NA non-coding downstream 1112331 40851137 ~ 40857097 (-)
XLOC_003024 BX001050.1 non-coding downstream 1227981 40741330 ~ 40741447 (-)
XLOC_003023 NA non-coding downstream 1347473 40620981 ~ 40621955 (-)
XLOC_003015 CR396590.4 non-coding downstream 1431381 40537440 ~ 40538047 (-)
XLOC_003047 NA non-coding upstream 332842 42313639 ~ 42355104 (-)
XLOC_003048 NA non-coding upstream 489819 42470616 ~ 42473939 (-)
XLOC_003053 FP236542.2 non-coding upstream 818318 42799115 ~ 42870149 (-)
XLOC_003057 CU326366.3 non-coding upstream 931136 42911933 ~ 42912047 (-)

Expression


Co-expression Network