XLOC_003048


Basic Information

Item Value
gene id XLOC_003048
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 42470616 ~ 42473939 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006127
acaaataatgcATCATAATTCATGTCGGATGAAGGATAATGTTTGTAATGTACATCGTTTGATGCTAAATAATCATCTTTAAAGTGATACAAGACCCCACTCTCACACTTATAATGCAGATACCTGACAAATAAGTTCTCAATTTAACACCTTttgtcatatattatatatactttgaGTCTTTTGTCAGTTTTAGTGATCATTTTCATGCAATAATGGAGAAAATGATACAAATATGCATTGTAATTCATGTCGTATGAAGGTAAATGTACATTGTTTTATGCTAAATAATCATCTTTAGTGATACACGACCCTACTATCACACTTATAACTTAGATATCTGACATATATACGTTCATAATTTAACACTATTTGTCATATCTTATGTATAATTTAGGTGTTTTATCAGTTTTAGTGGTTGTTTTCAAGCAATAACAGtgaaaattatacaaataatgcATCATAATTCATGTTGTATGAAGTATCATGTATATAATATGCATCATTTTATGATAAATAATCGTCTTTAGAGGGATACAAGACTCCACTTTTCCACTTATAATGCAGATACCTGACATATAGATTCATAATATATCAGGTTTAGTGGTTGTGCAATAACAGTGAGATGCAATAAGATTAAAATGGTACAAATAATGCATTATAATTCATGCTGtattattataatgttgtgtTTCTGACAATTTGAAGTTGAAATAGTAAGGGGAAGCTGTCTTAATCATCTCtgagaatgtttttatttactgtaaaaattactgCTGAATTACTACTGTATATTCtctataaaacaatgaaaaaaaatcagcattttattatgatttatgcaGAGTTATGATGCTGAAAACTTCTGTAGAAGgggctaaaaatgttttttttttctcttcataaaGGGGGCCTTGCATGCAGAAtaaagtttgggaaccactgcattaaacaacaaccacaacaacacaTAAACAGAATGAAGACTTTGGTGAGGGCACTGACTCCCTGCTACAGTCATTTTAACAGAGAACATTTACTTTCAATATATCAACAACTCGTGAGCTCTAAAACAATGCAGCTTCATAAATCATTCCTGTCATAACAGGTCATCGCTGGAACAATcgcattaaaaattaaatatacatcCGGTAATCAGAGACAGCACTGACTTGCAATCCTTAAAAGGGTAGTTCACGCGAAAATGAATATTTACCCattatttactctctctctctctctatctctctctcttaagtggtttgactttctttcttctgtttaacacaaaagaagatattttgaagaatgttggaaatgctATCTAAACGAGTTTtacttttctgttaaacacaaaagaagatattttgaagaatgttcagaaGAATGTCAGATCTCATGAAGGTTTGTAACAAATAAAGgatcttctgttaaacagaaaagaagatattttaaagaatggtggaaatgtgtaaccattgacttccatagtaggaaaaacaaatactactctATAAAATGCTGTGATATTCCAACCCAATTCTGGGTGTAATAGGAATAGTtgctttgtttctaaatgaataggaccaaatttaacccaatgtttgggttagtTCATATGTTACCCAATTTGGGTCAAAAtaacattagcatttttttttctggaagtaaatggttacaacctt
>TCONS_00006128
CATttgtcatatattatatatactttgaGTCTTTTGTCAGTTTTAGTGATCATTTTCATGCAATAATGGAGAAAATGATACAAATATGCATTGTAATTCATGTTGTATGAAGGTAAATGTACATTGTTTTATGCTAAATAATCATCTTTAGTGATACACGACCCTACTATCACACTTATAACTTAGATATCTGACATATATATACGTTCATAATTTAGCACTATTTgtcatattttatgtataatttagATGTTTTATCAGTTTTAGTGGTTGTTTTCAAGCAATAACAGTGAAAATCATAGAAATAATGCATCATAATTCATGTCGGATGAAGGATAATGTTTGTAATGTACATCGTTTGATGCTAAATAATCATCTTTAGAGTGATACAAGACCCCACTCTCACACTTATAATGCAGATACCTGACAAATAAGTTCTCAATTTAACACCATttgtcatatattatatatactttgaGTCTTTTGTCAGTTTTAGTGATCATTTTCATGCAATAATGGAGAAAATTATACAAATATGCATTGTAATTCATGTCGTGTGAAGGTAAATGTACATTGTTTTATGCTAAATAATCATCTTTAGTGATACACGACCCTACTATCACACTTATAACTTAGATATCTGACATATATACGTTCATAATTTAACACTATTTGTCATATCTTATGTATAATTTAGGTGTTTTATCAGTTTTAGTGGTTGTTTTCAAGCAATAACAGtgaaaattatacaaataatgcATCATAATTCATGTTGTATGAAGTATCATGTATATAATATGCATCATTTTATGATAAATAATCGTCTTTAGAGGGATACAAGACTCCACTTTTCCACTTATAATGCAGATACCTGACATATAGATTCATAATATATCAGGTTTAGTGGTTGTGCAATAACAGTGAGATGCAATAAGATTAAAATGGTACAAATAATGCATTATAATTCATGCTGtattattataatgttgtgtTTCTGACAATTTGAAGTTGAAATAGTAAGGGGAAGCTGTCTTAATCATCTCtgagaatgtttttatttactgtaaaaattactgCTGAATTACTACTGTATATTCtctataaaacaatgaaaaaaaatcagcattttattatgatttatgcaGAGTTATGATGCTGAAAACTTCTGTAGAAGgggctaaaaatgttttttttttctcttcataaaGGGGGCCTTGCATGCAGAAtaaagtttgggaaccactgcattaaacaacaaccacaacaacacaTAAACAGAATGAAGACTTTGGTGAGGGCACTGACTCCCTGCTACAGTCATTTTAACAGAGAACATTTACTTTCAATATATCAACAACTCGTGAGCTCTAAAACAATGCAGCTTCATAAATCATTCCTGTCATAACAGGTCATCGCTGGAACAATcgcattaaaaattaaatatacatcCGGTAATCAGAGACAGCACTGACTTGCAATCCTTAAAAGGGTAGTTCACGCGAAAATGAATATTTACCCattatttactctctctctctctctatctctctctcttaagtggtttgactttctttcttctgtttaacacaaaagaagatattttgaagaatgttggaaatgctATCTAAACGAGTTTtacttttctgttaaacacaaaagaagatattttgaagaatgttcagaaGAATGTCAGATCTCATGAAGGTTTGTAACAAATAAAGgatcttctgttaaacagaaaagaagatattttaaagaatggtggaaatgtgtaaccattgacttccatagtaggaaaaacaaatactactctATAAAATGCTGTGATATTCCAACCCAATTCTGGGTGTAATAGGAATAGTtgctttgtttctaaatgaataggaccaaatttaacccaatgtttgggttagtTCATATGTTACCCAATTTGGGTCAAAAtaacattagcatttttttttctggaagtaaatggttacaacctt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006127 False 1685 lncRNA 0.31 2 42470616 42473642
TCONS_00006128 True 1985 lncRNA 0.30 2 42470616 42473939

Neighbor

gene id symbol gene type direction distance location
XLOC_003047 NA coding downstream 115512 42313639 ~ 42355104 (-)
XLOC_003046 tcf7l1a coding downstream 172727 42195732 ~ 42297889 (-)
XLOC_003045 dusp11 coding downstream 323298 42134256 ~ 42147318 (-)
XLOC_003044 stambpa coding downstream 339208 42111288 ~ 42131408 (-)
XLOC_003043 ess2 coding downstream 362479 42089267 ~ 42108137 (-)
XLOC_003049 march5l coding upstream 26956 42500895 ~ 42519773 (-)
XLOC_003050 stc1l coding upstream 203952 42677891 ~ 42685512 (-)
XLOC_003051 zgc:100918 coding upstream 266923 42740862 ~ 42759918 (-)
XLOC_003052 wdr45 coding upstream 288515 42762454 ~ 42776344 (-)
XLOC_003053 FP236542.2 coding upstream 325176 42799115 ~ 42870149 (-)
XLOC_003040 NA non-coding downstream 484021 41982909 ~ 41986595 (-)
XLOC_003029 CU929265.1 non-coding downstream 1567379 40903121 ~ 40903237 (-)
XLOC_003028 NA non-coding downstream 1613519 40851137 ~ 40857097 (-)
XLOC_003024 BX001050.1 non-coding downstream 1729169 40741330 ~ 40741447 (-)
XLOC_003057 CU326366.3 non-coding upstream 437994 42911933 ~ 42912047 (-)
XLOC_003062 NA non-coding upstream 979232 43453171 ~ 43540184 (-)
XLOC_003063 NA non-coding upstream 1010688 43484627 ~ 43496216 (-)
XLOC_003064 dre-mir-9-2 non-coding upstream 1062021 43535960 ~ 43536095 (-)

Expression


Co-expression Network