XLOC_003049 (march5l)


Basic Information

Item Value
gene id XLOC_003049
gene name march5l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 42500895 ~ 42519773 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005584
GACATTTATTTTGACACGCGGAAGTTGCCCATCCGGAAGTTGTCCTTCATAAGGTTGTTGTTCTGTCCTCGAAGAAATTGAAACTGTCAAATCAGCCAGATATCTGACATAAACGCCCAGCAGAAGCGATTAGATACACGTAACATCTTCAGgtgTGATCTCTGAGGCTGCTGTGGCTCACTCATGCTGGATTTAACCTGACTCATCATGGCCTGTGTTGACGAACCTCCAGAGAAGCACTGCTGGGTGTGTTTTGCCACAGAGAAAGAGGACCGCGCTGCTGAATGGGTCAGTCCCTGCCGCTGTAAGGGCTGCACAAAGTGGATCCATCAGTCGTGTTTACAGCGATGGCTGGATGAGAAGCAGAAGGGAAACAGCGGAGGAGCCGTCAGCTGCCCACAATGTGGCACCGAATACCGCATCGTTTTCCCCAAAATGGGTCCTGTGGTGTACTTCCTCCAGCAGGTGGACCGGGCTCTGTCCAGAGCGAGTCCATTTGCTGCGGCTGGAGTGGTCGTGGGCACCGTCTACTGGTCCGCTGTGACTTACGGGGCCGTCACGGTTATGCAGGTGGTGGGGCATAAGAAGGGTCTGGATGTGATGGAGCGAGCGGATCCTCTGTTTCTGCTCATGGGTTTACCCACCATCCCTGTCATGCTGGTGCTGGGAAAAATGATCCGCTGGGAGGATTATGTGGTGCGGCTCTGGCAAAGACACTCCGCCAAACTGCAGATCTTCAGCGGCCTGGTGCCGGGTATGGGTCGCGCTCTTCCCCGTGTCCCAGTAGAAGGCAGTTATGGAGGAGATCATCTCTCTGTGTCTCGTACCCTGTGCGGTGCCCTCATCTTCCCCTCCATCGCCAACCTGGTGGGCCGTTTGCTGTTTCGCAGAGTCACGTCGAACCTGCAGCGCACAATCCTGGGTGGCATCGCATTTGTGGTGATGAAAGGAGTGCTGAAGGTGTATTTTAAGCAGCAGCAGTATCTCATCCAGGCTAACAGACACATCCTGAACTACCCGGAGCCCGAGGGACAAGCAGACGGAGCGACTGAAGACGAGGACAGCAGCAACGaatgaaacaaacacacattcgAGGACGGCAAACCAATGCACTGTAGTATAGGATTCGCCAAGACTCAAAGAGctcatttttttcagcttcacACGCACTCTGAATCAGCACAAACACATGCTCGCTGTGTGTTATTAAAACGCAAAGATGGCCCGAGTTCTGTTATCATTGAGAAGAAGCAGACGTCGGGGTGTTAAAGTGCCTGTAAATGCAAAATTGACCAGTAGATGGCGCCAAATGCAAAAGCTGGTAAATGCACTGCACACTGATGTCTCTGATGGAAAATAGACGTTGACATTTAGGATGCAAATTGTACCAGCTGAATCATGTTCAGATTGTGAGAATGACGTGATTGATTCTGTTTGAAAGGTAACACGCACTGGCTCTTTAAATATAGATTAAATAAAGGATAATAAACACAGAAATGTTGACTTTTTGTTGCATTTAA

Function

symbol description
march5l Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in negative regulation of cell aging; protein autoubiquitination; and regulation of mitochondrial fission. Predicted to be located in endoplasmic reticulum and mitochondrial outer membrane.

GO:

id name namespace
GO:0090344 negative regulation of cell aging biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0090140 regulation of mitochondrial fission biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4792 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in negative regulation of cell aging; protein autoubiquitination; and regulation of mitochondrial fission. Predicted to be located in endoplasmic reticulum and mitochondrial outer membrane.

Ensembl:

ensembl_id ENSDARG00000028559

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005584 True 1520 mRNA 0.50 7 42500895 42519773

Neighbor

gene id symbol gene type direction distance location
XLOC_003048 NA coding downstream 26956 42470616 ~ 42473939 (-)
XLOC_003047 NA coding downstream 145791 42313639 ~ 42355104 (-)
XLOC_003046 tcf7l1a coding downstream 203006 42195732 ~ 42297889 (-)
XLOC_003045 dusp11 coding downstream 353577 42134256 ~ 42147318 (-)
XLOC_003044 stambpa coding downstream 369487 42111288 ~ 42131408 (-)
XLOC_003050 stc1l coding upstream 158118 42677891 ~ 42685512 (-)
XLOC_003051 zgc:100918 coding upstream 221089 42740862 ~ 42759918 (-)
XLOC_003052 wdr45 coding upstream 242681 42762454 ~ 42776344 (-)
XLOC_003053 FP236542.2 coding upstream 279342 42799115 ~ 42870149 (-)
XLOC_003054 FP236542.1 coding upstream 353390 42873163 ~ 42882215 (-)
XLOC_003040 NA non-coding downstream 514300 41982909 ~ 41986595 (-)
XLOC_003029 CU929265.1 non-coding downstream 1597658 40903121 ~ 40903237 (-)
XLOC_003028 NA non-coding downstream 1643798 40851137 ~ 40857097 (-)
XLOC_003057 CU326366.3 non-coding upstream 392160 42911933 ~ 42912047 (-)
XLOC_003062 NA non-coding upstream 933398 43453171 ~ 43540184 (-)
XLOC_003063 NA non-coding upstream 964854 43484627 ~ 43496216 (-)
XLOC_003064 dre-mir-9-2 non-coding upstream 1016187 43535960 ~ 43536095 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000158_00873090_00877118 MARCH5, MARCH5L coding CI01000158 null 873032 ~ 877875 (-)