XLOC_003050 (stc1l)


Basic Information

Item Value
gene id XLOC_003050
gene name stc1l
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 42677891 ~ 42685512 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005585
ttttaataatgacaaaaaacactCGTACCTTTAGCACATTTATCTGTGCCAGGTGTTGGTTAAAACTACATCCAAGAACATGACATACGACAGATATGCATTAACTAAATATCTTTGACGTGAAATCCAAACCAAACATACTGATTGGTTTTCCACAAAGGAGCCATTGAGATTCACCTGCTTGAAAGGAATATCCTTTATCTTTCTTGTTATTTGATAATGTAATCCACACATAATTCAAGGTCATTATTAGAAACATTGTTATGGTAGTTGGTGATTAATGGTTTTAAatggacagttttttttaataagtatcTACTGTAAAAGTTTGAATTGCAGCAATCACAGAAATGCCCAACTGGAGATAAAATCATAGCAGGTGGTTCTGCATTATTATCAACCCATGAATATTTATGAAGAGATGGAAAGTTTGAGCTTTCGTTTCCTTCGTTCTGATTGGTCAAGGCGGTGATTTATGAGCTGTCGAGTTCAGCTGAAGATCAGTATAAAGCTCAGCCCATCTTCAAGCTGCAGCACAAACCCTCAGAATCAGCAAACATCTCCTGCTTTGGTTGTAAAGTTGCAGACATGCTCCTGAAAAGCGGATTTCTTTTGCTGGTGGTTTTGGCTGCTTGTGCATTTTGCACAACTCAGGAATCCACACAACCGAGACGAGCACGGTTCTCATCCAACACCCCTTCTGATGTTGCCCGCTGTCTGAATGGCGCTCTGCAAGTGGGTTGTGCGACCTTCGCATGTCTGGAAAACTCCACCTGCGACACCGACGGCATGCACGAGATCTGCAACGTCTTCCTCCACACAGCTGCTGTTTTTAACACAGAGGGTAAAACATTTGTGAAAGAGAGCATCAAGTGCATGGCCAACGGCATCACCTCCAAAGTGTTCCAGACCATTAAGCGCTGCTCCACCTTCCAGAAGATGATCGCTGAAGTGCAGGAGGAGTGTTATAAGAAGCTGGACCTCTGTGAAGTGGCCCGATCAAACCCTGAGGCCATTGGAGACGTGGTGCAGGTGCCCAACACTTTCCCCAACAGgTATTACAGCACACTTCTGCAGAGTTTAATGGAGTGCGAGGAGGACACAGTGGAGGTGGTTCGAGCTGGTCTGGTGTCCAGACTGGGACCGGATATGGCCACACTCTTCCAGCTGCTTCAAAACAAACCCTGCTCATCCGAACCCGCAGCCGCCGAGCCTTCTGGGACTGAGAGTCAAACCGGCTTCCGCTGGCCCCCAATGTTCAAGATCCAGCCAAACATGTACAACAGAGACCAGACTCACCTGTTCGCCAGAAAACGCTCCATCGTGGGAAGTCCTTAAGAGTCCTAAGAGAAGATTCAATGACAAGTGCATTAAAACAGTAGTGTTTTAACAGTAATCTTTGCTTAGTATCACAAAATCCAAGTACTAATTGCATTGCATTGAATATTCATGCCATTAAACTGTTTTAGATTGTTCAtatttattgcattatgttttggtttatttggacctTCATGCAAGTGTGCAGGATATCGAGAAATGctggaaaacaaaagaagaaaccAACTTGAAGCGGCAGGGCAGGAGTATTTATTAGTGTACActgaatataatttattttttcctaCCAAATGTAATTTATATAGTTTACTGTTGTTTCTTGTGGTCTGAGtttgaaagtaaagaatgaaCGAGAGAGAAAGATAAGAGTGAGAGAAGAATAATGCAGTTTTCTGGATGTGGTTGAGATGTTTTCTGTGCTGGTCATGGGAAATATTATACATTAAGAAGGGCTAACTTTGTTCATGTTGGTTGTATAGTTGGATGTGCTTGGatagaaataaagttttaaagctGCCTTGTGTTGTATTACTGATTTATTGAATTAATGCGTCTATGATCTGATCAATGGCATCCATACAAAAACAGAATAGGATCTAAATTAAGactttaaactacaaaaactgTCACA

Function

symbol description
stc1l Predicted to enable hormone activity. Acts upstream of or within several processes, including cellular calcium ion homeostasis; negative regulation of macromolecule metabolic process; and response to calcium ion. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including central nervous system; corpuscles of Stannius; gill; integument; and pleuroperitoneal region. Orthologous to human STC1 (stanniocalcin 1).

GO:

id name namespace
GO:0010629 negative regulation of gene expression biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0051592 response to calcium ion biological_process
GO:0006874 cellular calcium ion homeostasis biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1521 Predicted to enable hormone activity. Acts upstream of or within several processes, including cellular calcium ion homeostasis; negative regulation of macromolecule metabolic process; and response to calcium ion. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including central nervous system; corpuscles of Stannius; gill; integument; and pleuroperitoneal region. Orthologous to human STC1 (stanniocalcin 1).

Ensembl:

ensembl_id ENSDARG00000058476

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005585 True 1972 mRNA 0.41 4 42677891 42685512

Neighbor

gene id symbol gene type direction distance location
XLOC_003049 march5l coding downstream 158118 42500895 ~ 42519773 (-)
XLOC_003048 NA coding downstream 203952 42470616 ~ 42473939 (-)
XLOC_003047 NA coding downstream 322787 42313639 ~ 42355104 (-)
XLOC_003046 tcf7l1a coding downstream 380002 42195732 ~ 42297889 (-)
XLOC_003045 dusp11 coding downstream 530573 42134256 ~ 42147318 (-)
XLOC_003051 zgc:100918 coding upstream 55350 42740862 ~ 42759918 (-)
XLOC_003052 wdr45 coding upstream 76942 42762454 ~ 42776344 (-)
XLOC_003053 FP236542.2 coding upstream 113603 42799115 ~ 42870149 (-)
XLOC_003054 FP236542.1 coding upstream 187651 42873163 ~ 42882215 (-)
XLOC_003055 CU326366.2 coding upstream 201692 42887204 ~ 42898220 (-)
XLOC_003040 NA non-coding downstream 691296 41982909 ~ 41986595 (-)
XLOC_003029 CU929265.1 non-coding downstream 1774654 40903121 ~ 40903237 (-)
XLOC_003028 NA non-coding downstream 1820794 40851137 ~ 40857097 (-)
XLOC_003057 CU326366.3 non-coding upstream 226421 42911933 ~ 42912047 (-)
XLOC_003062 NA non-coding upstream 767659 43453171 ~ 43540184 (-)
XLOC_003063 NA non-coding upstream 799115 43484627 ~ 43496216 (-)
XLOC_003064 dre-mir-9-2 non-coding upstream 850448 43535960 ~ 43536095 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000158_00944536_00948113 STC1L coding CI01000158 null 943955 ~ 948113 (-)