XLOC_003051 (zgc:100918)


Basic Information

Item Value
gene id XLOC_003051
gene name zgc:100918
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 42740862 ~ 42759918 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005586
GCACAGTTTAATCCTCAAGGATGGCTTCTCGTAAGAAGGTGCTGCTGAAGGTGATCATTCTGGGGGATTCTGGTGTTGGGAAAACCTCTCTGATGAACCAGTATGTCAACAAGAAGTTCAGCAATCAGTATAAAGCCACCATCGGCGCAGACTTTCTTACCAAGGAGGTGATGGTGGACGACAGACTGGTGACGATGCAGATCTGGGATACGGCAGGACAGGAGCGTTTCCAGTCTCTCGGGGTGGCGTTTTACCGTGGTGCTGACTGCTGTGTTCTGGTGTACGATGTGACCGCGCCTAACACCTTCAAGACTCTGGACAGCTGGAGGGACGAGTTCCTGATTCAGGCCAGTCCTCGAGACCCGGAGAACTTCCCCTTCGTGGTGCTCGGAAACAAGATCGACTTGGAGAACAGACAGGTGACGACGAAACGAGCCCAGGCGTGGTGTCAGAGCAAAAGCAATATCCCGTACTTTGAAACCAGCGCAAAAGAGGCCATCAATGTGGACCAAGCTTTCCAAACCATCGCCCGCAACGCCCTCAAACAGGAGTCTGAGGTGGAGACGTACGATTTCCCTGACCAGATCAAACTGCGAGACGACAGACCTGTGTCCTCCGGTGATGGCTGCAGCTGCTgagacactgacacacacacgcacacacacatccagcATCCAGAAGAAAACACTCTTTTCCAAAACTTGTATGTAAAGAACTGTTAGCGGTTTCAAGAAACTCCCTGCCACAGCATCAGTTTTAATAGAACTACCTTTATGAATATTATTTCTACGAGAAAGAGATAGCTATTCTATTATTTACAAGTGATTATGTTTTTGCTTCATTCATGCACATTATATAGTGTCTCCTGCTTATGTCTGTCCGTGCCTTTTACTTCgtattttcttttatgttttaggATGTAAATGCAGTCACACTTCCTTGTAATTCCTTTTATTTGCCAAATCCCTTCACATGTTGAACTGTGGACGCTTGTTTCAACAGGGAGACTTTAAAAAAAGGTATGACTTTTTTTGTCTTGCTTGACTTTGATCTCAGAATTCTGAGGTTAAGTTTCAAATTTAAAAGTTTTGTACGATTTTTGAGAATGCCAGACTTGCAAAACAGTCAATAAACTGATATAACTGCaggaaaaaatgtaatgtttaggaCAAACTCACAATTAAGAAAAATCTGAATTTGAGGTTACATTTCTAGTGAAGATCCTGCAGTTTTTTCCCTATAATTCCTCTAAATATTACATGAAATTTGCATTTTGTGAGGGGAAAAAGCAGCAGTTACCAGCACAAAAAAGGTAAAAACTGCAAGATATAAAGCAGATCACAATGCTAAACAGCCTATAAACCTGCAAAATACACTACAGTTGAAGTTTTATAGCGCTGCAGacaaactcagaattgtgagatatcaACAAAATTActgataattttaataaaatctgCTAAAATGCACAATATTATTCCTTACAAACTTGCAatagaaatgaaggaaaaactgtTTCTTATCAGAAATGTACTTTAAAATGGTATTTTCATGTCACAAAAATGGCCAAGATATAAATGAACtgcaaatataaacaaaaaactgAGCAAAAATCTGAATTTGAAGTCACATTTCAAGATATAAAGCAGCTTACAAAGCTAAACAGCCTATAAACCTGCAAAATTACACTAAAGCTTATAGAGCTGCAGacaaactcagaattgtgagatatcaacaaaaaataatagttattttaataatctgCTAAATTGCAAGttacatcatatttttttcttcataattCCCCACACAAATTATAAACTTGCaataaaaatgaaggaaaaactgtTTCCAATGcagaaaaattactttaaaatgatattttgataaatgataaaatgataaaaattgcCAAAATATAAAAGAACTGCAAATGTGAAGTAAAAACCAAGCAAAAATCTGAATTTGAAGTCACATTTCAAGATATAAAGCAGCTCACAATGCTAAACAGCCTATAAACCTGCAAAATTACACTAAAGCTTATAGAGCTGCAGacaaactcagaattgtgagaaatcaACAAATATAATAGTAATTTAACAATCTGCTAATTGGCAAGTTACATCCTATTTTTCCCTCATAATTTCTCACAAAACTTACAAActtgcaataaaaataaagaaaaagctgTTTCTGATGCAGGAAAATTACTTTAATATAAAAGCACtgcaaatataaagtaaaaaccAAGCAAAAATGTGAATTTGAAGTCACATTTCATGTTAAGATCCTGCAGTTCTTCCCTAACATTtctctaaatatttaattaaacttgcctttctgagaaaaaaatctgCCGTTTTCAAGTCTCAAAAATGGCCAAGATATAAATGAACTGCAAATATAAACTAAAAACCAAGCAAAAATCTGAATTTGAAGTCACATTTCAAGATATAAAGCAGCTCACAATGCTAAACAGCCTATAAACCTGCAAAATTACACTAAAGTTGAAGTTTTATATCGCTGCAGacaaactcagaattgtgagatatcaacaaaaaataatagttattttaataatctgCTAAATTGCAAGttacatcatatttttttcttcataattCCCCACACAAATTATAAACTTGCaataaaaatgaaggaaaaacagTTTCCAATGCAGAACAATtactttaaaatgctattttgataaatgattaaatgataaaaattgtcaaaatatAAAAGACCTGCAAATGTAAAGCAAAAATCTGAATTTGAAGTCACATTTCAAGTTAAGATCCTGCAGTTTTTCTTTATAATTcctctaaatatttaattaaacttgcataactgagaaaaaaaatctgcagttttCAAGTCTCAAAAATGGCAAGATATAAAGCAGCTCACAATGCAAAACAGCCTATACACTTGCAAAATTACACTAAAGTTGAAGTTTTATAGCGCTGCAGACAAACTCAGAATTGTTCGAAatcaacaattataataattatctGCTAATTTGCATGTTGCATAATACTTTCCCCTTATCATTCCTCACAAAACTTACAAACTTGCAATAGAAATGAAAGGAAAAAACTGTTTCTGATGCAGAAATCtactttaaaatgatattttcatGTCACTAAAATGGCCAAAATataaaagaactgcaaatataaactaaatataaccaaattcagattttttttaaaaagttaagatCCTGCAGTTTTTCTTTATAATTCctctaaatattaaattaaacttgcATTTccgaagaaaaaaaatctgcagttttCAAGTCTCAAACATTTCAAGATATAAAGCCGCTCACAATGCTAAACAGCCTATAAACCTGCAAAATTACACTAAAGTTGAAGTGTTATAGCGCTGCAGacaaactcagaattgtgagaaatcaacaaaaataatattgacTTAAAAATCTGCTAATTTGCAAGTTACTTTTTCCTCACAAACTTGCAataaaaaatgaaggaaaaactgcTTCTGATGCAGGACAATGACTTTTCAAAAATGGCCAAAATATAACCTAAAAACCaagaaaaatctaaatttgaAGTTACATTTCAAGTTAAGATCCTGCAGTTTTTCCCTAAAATTCctctaaatattaaattaaacttgcATTTGTGAGGGGTGAAAAAACAGCAGCTTTCAAGTCTCAAAAATTACAAGATATTAAGCAGATCCCAATGCTAAACAGCCTATAAACCTGCAAAATTACACTAAAGTTCAGGCTTTATAGCGCTGCAGGCAAACTCAGATTTGTGagaaatcaacaataataataataataataataataataataaaatgttaaattgcaAGTTGCATTATATTTTCCCCTCATAATTTCACACAAACCTTACAAACTTGCAATAGAAATTATGAAAAAACTGTTTCCAATGCAGAAAAATGActttgaaattatatttttaagtcaCAAAAATAGCCAAAACAAACTCCGAATTGTGAGATATcaacaaaagtaataataataattttaaaaaatctgttaaattgcAAGATACATAATATTTTTCACTTATAATCACTTAGAAAACTTGCAATATAAATGAAGCAAACGCTGTTTCTGATGCaggaaaatgactttaaaattatattttcatgtcacaaaatataaaagaactgcaaatatAATCTGAAAACCAAgcaaaaatctgaattgtgatattaaaaaagtcaaaatgacCTTTTTTTATTGAATCTCACAGCAGAAACAAGCTTCCACGTTAACCTTAATCAATTATTTAACTataaaactacacacacacacacacacacacacacacacagtacaagcAGTCCACATGATCAAAATCTACAGCGTAATTGAAGAGTTTAGAATCTCCAGCCAGAATAAGTGAGCGATTGTGCCTGagaacgaacacacacacacacacacacacacactccagcgcAGAGGGCCGTGTGGCTGTCAAATGAAGGTTTTGGGGGACATGAAATATCCAGTGCAATCATTTTAACCATGCAGCAGGTTTCCTTGGAAGCGTCTCCCGGGTTTTAATGTATGAATGTAACATTACTGATTCATTTACATCTCTACAGCTTATGTTTCTACATGCGCTTAGTTGATGTTTCTAACCAAATAATGATGCAGTTTATGGATATGATCAAATGTGAAGGAGAAAAACAAACGGAGAGCGAGTCCTGGCaacctttgatttatttttaacatccTTATTTCCATCCTCCAGTATTGTAGATGATTTAGATCGGAGAATCATAGTGACGTCTGCCAATAGAAACCAATAAACACATCTGTCCCTCTTTTATAAAACAATGACCTTTCCTAGAACGCTGTTCGATCATCTCTCGGTATTGTTTCCTCAACAATGCtcataaataaatctttattcaCATGGCAACGCTGTGGATCTTGTTTGTTTTAGATCTGaacacaacacatttttttgaaaGTAGTCTAATTTTACAGCTCCCCTAGAGATAAACAGTGGagttttactttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattcagatgaTTTTCGGGTCTGGcggaaacacttttagcttagcttagcataaatcattgaatcggattagaccattagcatctcactaaaAAATAGTCTGATTTTACTGTCCCTCTGGGATTAAACTGctgatttttaccattttttaacacattcagTT
>TCONS_00005587
GGGAGGAGTGTTTGCGGCTCATTATTATTACACACGGATGTGCAGAACCGTCCGTGGCAGAAATCTGAAAACAAGCCACGAACAACAAGCCGAGAATAAGCGAGTCTGAAGATTTGTGGCCAAAGATTTATTTTATGACAGCAGGAATTTGTTGAGCCGAAGCCGGGATTTCTCCTCAGAAAGCACAGTTTAATCCTCAAGGATGGCTTCTCGTAAGAAGGTGCTGCTGAAGGTGATCATTCTGGGGGATTCTGGTGTTGGGAAAACCTCTCTGATGAACCAGTATGTCAACAAGAAGTTCAGCAATCAGTATAAAGCCACCATCGGCGCAGACTTTCTTACCAAGGAGGTGATGGTGGACGACAGACTGGTGACGATGCAGATCTGGGATACGGCAGGACAGGAGCGTTTCCAGTCTCTCGGGGTGGCGTTTTACCGTGGTGCTGACTGCTGTGTTCTGGTGTACGATGTGACCGCGCCTAACACCTTCAAGACTCTGGACAGCTGGAGGGACGAGTTCCTGATTCAGGCCAGTCCTCGAGACCCGGAGAACTTCCCCTTCGTGGTGCTCGGAAACAAGATCGACTTGGAGAACAGACAGGTGACGACGAAACGAGCCCAGGCGTGGTGTCAGAGCAAAAGCAATATCCCGTACTTTGAAACCAGCGCAAAAGAGGCCATCAATGTGGACCAAGCTTTCCAAACCATCGCCCGCAACGCCCTCAAACAGGAGTCTGAGGTGGAGACGTACGATTTCCCTGACCAGATCAAACTGCGAGACGACAGACCTGTGTCCTCCGGTGATGGCTGCAGCTGCTgagacactgacacacacacgcacacacacatccagcATCCAGAAGAAAACACTCTTTTCCAAAACTTGTATGTAAAGAACTGTTAGCGGTTTCAAGAAACTCCCTGCCACAGCATCAGTTTTAATAGAACTACCTTTATGAATATTATTTCTACGAGAAAGAGATAGCTATTCTATTATTTACAAGTGATTATGTTTTTGCTTCATTCATGCACATTATATAGTGTCTCCTGCTTATGTCTGTCCGTGCCTTTTACTTCgtattttcttttatgttttaggATGTAAATGCAGTCACACTTCCTTGTAATTCCTTTTATTTGCCAAATCCCTTCACATGTTGAACTGTGGACGCTTGTTTCAACAGGGAGACTTTAAAAAAAGGTATGACTTTTTTTGTCTTGCTTGACTTTGATCTCAGAATTCTGAGGTTAAGTTTCAAATTTAAAAGTTTTGTACGATTTTTGAGAATGCCAGACTTGCAAAACAGTCAATAAACTGATATAACTGCaggaaaaaatgtaatgtttaggaCAAACTCACAATTAAGAAAAATCTGAATTTGAGGTTACATTTCTAGTGAAGATCCTGCAGTTTTTTCCCTATAATTCCTCTAAATATTACATGAAATTTGCATTTTGTGAGGGGAAAAAGCAGCAGTTACCAGCACAAAAAAGGTAAAAACTGCAAGATATAAAGCAGATCACAATGCTAAACAGCCTATAAACCTGCAAAATACACTACAGTTGAAGTTTTATAGCGCTGCAGacaaactcagaattgtgagatatcaACAAAATTActgataattttaataaaatctgCTAAAATGCACAATATTATTCCTTACAAACTTGCAatagaaatgaaggaaaaactgtTTCTTATCAGAAATGTACTTTAAAATGGTATTTTCATGTCTCAAAAATGGCCAAGATATAAATGAACTGCAAATATAAACTAAAAACCAAGCAAAAATCTGAATTTGAAGTCACATTTCAAGATATAAAGCAGCTCACAATGCTAAACAGCCTATAAACCTGCAAAATTACACTAAAGTTGAAGTTTTATATCGCTGCAGacaaactcagaattgtgagatatcaacaaaaaataatagttattttaataatctgCTAAATTGCAAGttacatcatatttttttcttcataattCCCCACAC
>TCONS_00005588
GCACAGTTTAATCCTCAAGGATGGCTTCTCGTAAGAAGGTGCTGCTGAAGGTGATCATTCTGGGGGATTCTGGTGTTGGGAAAACCTCTCTGATGAACCAGTATGTCAACAAGAAGTTCAGCAATCAGTATAAAGCCACCATCGGCGCAGACTTTCTTACCAAGGAGGTGATGGTGGACGACAGACTGGTGACGATGCAGATCTGGGATACGGCAGGACAGGAGCGTTTCCAGTCTCTCGGGGTGGCGTTTTACCGTGGTGCTGACTGCTGTGTTCTGGTGTACGATGTGACCGCGCCTAACACCTTCAAGACTCTGGACAGCTGGAGGGACGAGTTCCTGATTCAGGCCAGTCCTCGAGACCCGGAGAACTTCCCCTTCGTGGTGCTCGGAAACAAGATCGACTTGGAGAACAGACAGGTGACGACGAAACGAGCCCAGGCGTGGTGTCAGAGCAAAAGCAATATCCCGTACTTTGAAACCAGCGCAAAAGAGGCCATCAATGTGGACCAAGCTTTCCAAACCATCGCCCGCAACGCCCTCAAACAGGAGTCTGAGGTGGAGACGTACGATTTCCCTGACCAGATCAAACTGCGAGACGACAGACCTGTGTCCTCCGgATGTAAATGCAGTCACACTTCCTTGTAATTCCTTTTATTTGCCAAATCCCTTCACATGTTGAACTGTGGACGCTTGTTTCAACAGGGAGACTTTAAAAAAAGGTATGACTTTTTTTGTCTTGCTTGACTTTGATCTCAGAATTCTGAGGTTAAGTTTCAAATTTAAAAGTTTTGTACGATTTTTGAGAATGCCAGACTTGCAAAACAGTCAATAAACTGATATAACTGCaggaaaaaatgtaatgtttaggaCAAACTCACAATTAAGAAAAATCTGAATTTGAGGTTACATTTCTAGTGAAGATCCTGCAGTTTTTTCCCTATAATTCCTCTAAATATTACATGAAATTTGCATTTTGTGAGGGGAAAAAGCAGCAGTTACCAGCACAAAAAAGGTAAAAACTGCAAGATATAAAGCAGATCACAATGCTAAACAGCCTATAAACCTGCAAAATACACTACAGTTGAAGTTTTATAGCGCTGCAGacaaactcagaattgtgagatatcaACAAA

Function

symbol description
zgc:100918 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in endosome to lysosome transport and phagosome-lysosome fusion. Predicted to be active in late endosome; lysosome; and phagocytic vesicle.

GO:

id name namespace
GO:0090385 phagosome-lysosome fusion biological_process
GO:0008333 endosome to lysosome transport biological_process
GO:0005764 lysosome cellular_component
GO:0005770 late endosome cellular_component
GO:0045335 phagocytic vesicle cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040927-2 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in endosome to lysosome transport and phagosome-lysosome fusion. Predicted to be active in late endosome; lysosome; and phagocytic vesicle.

Ensembl:

ensembl_id ENSDARG00000087243

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005586 False 5267 mRNA 0.33 5 42740862 42751641
TCONS_00005587 False 2000 mRNA 0.40 7 42743498 42759918
TCONS_00005588 True 1135 mRNA 0.44 6 42744696 42751641

Neighbor

gene id symbol gene type direction distance location
XLOC_003050 stc1l coding downstream 55350 42677891 ~ 42685512 (-)
XLOC_003049 march5l coding downstream 221089 42500895 ~ 42519773 (-)
XLOC_003048 NA coding downstream 266923 42470616 ~ 42473939 (-)
XLOC_003047 NA coding downstream 385758 42313639 ~ 42355104 (-)
XLOC_003046 tcf7l1a coding downstream 442973 42195732 ~ 42297889 (-)
XLOC_003052 wdr45 coding upstream 2536 42762454 ~ 42776344 (-)
XLOC_003053 FP236542.2 coding upstream 39197 42799115 ~ 42870149 (-)
XLOC_003054 FP236542.1 coding upstream 113245 42873163 ~ 42882215 (-)
XLOC_003055 CU326366.2 coding upstream 127286 42887204 ~ 42898220 (-)
XLOC_003056 ACOT12 coding upstream 143173 42903091 ~ 42923385 (-)
XLOC_003040 NA non-coding downstream 754267 41982909 ~ 41986595 (-)
XLOC_003029 CU929265.1 non-coding downstream 1837625 40903121 ~ 40903237 (-)
XLOC_003028 NA non-coding downstream 1883765 40851137 ~ 40857097 (-)
XLOC_003057 CU326366.3 non-coding upstream 152015 42911933 ~ 42912047 (-)
XLOC_003062 NA non-coding upstream 693253 43453171 ~ 43540184 (-)
XLOC_003063 NA non-coding upstream 724709 43484627 ~ 43496216 (-)
XLOC_003064 dre-mir-9-2 non-coding upstream 776042 43535960 ~ 43536095 (-)

Expression


Co-expression Network