XLOC_003053 (FP236542.2)


Basic Information

Item Value
gene id XLOC_003053
gene name FP236542.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 42799115 ~ 42870149 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005591
GTTCAggaaaatatcttgttttgttctcaacataaaaaagaaactcataaaggttttgaacaaTTCGAGGAAGAATAAATGgtaagcatttttatttatatattgatttgtgtgtactatccctttaagaacagCGAACCGGAGCTAACATCTCGTTTGTAGCCTACTCGCTCTCGGcagtaggcgatttcggacgcaTCATTCTTACATAACACGTAAAAATGCCGCTGAAGTGACTTTTATGGCAGGAGATGATGTTCATGTGTTTACTTCTTCATATATCAAGATGACGGACTGGAAACACCACAAGCGAGAATTCATTTTCGGAGATTGGGTCAGATATTCATATGCTCTGTGTAGAGGATTTACTGTCTGGATTGGACCGTGATAACAGACAGCAAATTTTTGAGTTAGGTTTCAGCCATGGATTCAGCCCCAGTGGATTATGGGATTGCATGTTTTGCTTCAGTTTTTCATCATTTCTGTCTCCCACCTCTAAACCGTCTCCTGGTCTCCACCAGCAGTGAATGCCAATCAGATGTTTGAGTTGAGttgttttttggttgttttttaatTACCAGTATAAAATGAgttctctttttttgtttcagttttgtCATTTTAGTCGCCTCCTTTAACTTATTTCATTGAGATAATATTTAACAATTCGATAGG
>TCONS_00006129
acgcaTCATTCTTACATAACACGTAAAAATGCCGCTGAAGTGACTTTTATGGCAGGAGATGATGTTCATGTGTTTACTTCTTCATATATCAAGATGACGGACTGGAAACACCACAAGCGAGAAAAACCACTTCAGGGAGACTAAAtaGAGTAAAGCCGATGTCCTTCAGGGAAATAAACACGCTCATCGATGGAGGTCTAGAGAAACAGCCGGCGGCCTGAACATTTGTTCTGTGGCATCTTCATTATTTGCAGGCCATTATGATGCGTCACGCCTCGTCTCCTGTAGGCTTCACTTTCAACAGCCAAGGGTCTTTTGAAGGAGAAGAGCCGGAGAGGGTTCAATCGATCCGCTCCTGCGAGAACATGTGGAAATGGGCTCCTCTTTTATTTAGCAGAGGCCTGTCAGTCATCAAAGACACGGCAGGATCATACGCCAATGTAAATGAAGATCAGGAGTGCTGGGAAGGTGAACTTGTTGGTCCGACTTCTCCATCATTAGTTCCGGTTTtatgtaggaaaaaaaaaacgtggaGCTGAAGAAATAATGGAAATGATATGCACGAGCTTGAAGGCCATGGCAATCGACTTTCACATTCAACATTCATCTTAAGAGACGCTCAAAAGTTCTCATGGTCGCGATATGGAAtagaaaatgtctttttttctttcttttttttttacgtgaTAAAAGAGCCGTGTGCTTGTCTCACCTTGACAAGGCCATTGTGTGAGAAGAGAAAGCACAGGAATCACAATATtagatcattattattttttgtcaagCATGAGGAGTCAAGAGTGGGAAAATTACAATTCAGGTTTAACCAAACTGTAATAAGTGTAACTAAACCTAAATTTAATGACCTAAATCTTAACCTCAGTAATAACTGAACCAAAACTACAGTATTAAGTAAATAATGTTTCTGTGTCcaaaattttattaataacttcAACAAAGCCAAAATCTCAGCATTGACTTAACCAAAACTTTAGTATTACCCAAACCAGAACTTCAGTGTTACATAAACCAAAACGTTAGTATTAACTAAACCTAAACATCAGTATTAACTAAACCAAAACTTTAGTATTACCTAAACCTAAACATCATTATTAACTAAACCAGAACTTCAGTGTAACCTAAACCAAAACGTTAGTATTAACTAAACCTAAACATCAGTATTAGCTTAACCAAAACTTTAGTATTAATTAAACCTAAACATCATTAACTAAACCAGAACTTCAGTGTAACCTAAACCAAAACGGTAGTATTAACTAAACCTAAACATCAGTATTAACTAAACCAAAACTTTAGTATTAACTAAACCTAAACATCAGTATTGACTAACCAAAACTTTAGTATTAACTAAACCAGAACTTGAGAGTTACCTAAAACAAAACTTTAGTATTAACTAAACCTAAACTTCAGTGTTAACTAAACCAAAACCTCAGCATTAACTAAACCAAAACTtcagtttaaactaaactaatgtTTCAGTATCATCTATGCCAGTATTTCTGTGTTAACTAAAccaaaacattattattagcaAAACCAAAACTTCAGCTTTCCATCTGCTTTCCATGCCCTCGCCGGGCATTACCAGATGTTGTCGCTGGTAAGGCAACGCCTGCAGCAGGCGGTGGATCACAAGCCTTTCGACTACCTGGGCAACTTATAGATGATCTACAAGCAGCCAAAGGCAGGCCAGGTCAATTAGAGCTTTGGCCTGCTCTTTGGCTGAGGCGCACTCATCCAGGGGCCACTGCCGTGAGCGGCGCAGCGCACACTTTCCGTTTCGGCTGGGGGAAGCGCTCTCCGTGAGCCGGAGTTGATGACGACCAGTTCCTCGAGCTGACGGTGAATGAGGCCTATCTTTAGCCCCAGGTGCTGGTGgcATCCTTCATTGATGAACAGAAAAATA
>TCONS_00006130
CGGGAAAAGAGTTTATAGGTGGTCGCTTGGGCAAAGGAGTTCACTTGGAGTAAAGCCGATGTCCTTCAGGGAAATAAACACGCTCATCGATGGAGGTCTAGAGAAACAGCCGGCGGCCTGAACATTTGTTCTGTGGCATCTTCATTATTTGCAGGCCATTATGATGCGTCACGCCTCGTCTCCTGTAGGCTTCACTTTCAACAGCCAAGGGTCTTTTGAAGGAGAAGAGCCGGAGAGGGTTCAATCGATCCGCTCCTGCGAGAACATGTGGAAATGGGCTCCTCTTTTATTTAGCAGAGGCCTGTCAGTCATCAAAGACACGGCAGGATCATACGCCAATGTAAATGAAGATCAGGAGTGCTGGGAAGGTGAACTTGTTGGTCCGACTTCTCCATCATTAGTTCCGGTTTtatgtaggaaaaaaaaaacgtggaGCTGAAGAAATAATGGAAATGATATGCACGAGCTTGAAGGCCATGGCAATCGACTTTCACATTCAACATTCATCTTAAGAGACGCTCAAAAGTTCTCATGGTCGCGATATGGAAtagaaaatgtctttttttctttcttttttttttacgtgaTAAAAGAGCCGTGTGCTTGTCTCACCTTGACAAGGCCATTGTGTGAGAAGAGAAAGCACAGGAATCACAATATtagatcattattattttttgtcaagCATGAGGAGTCAAGAGTGGGAAAATTACAATTCAGGTTTAACCAAACTGTAATAAGTGTAACTAAACCTAAATTTAATGACCTAAATCTTAACCTCAGTAATAACTGAACCAAAACTACAGTATTAAGTAAATAATGTTTCTGTGTCcaaaattttattaataacttcAACAAAGCCAAAATCTCAGCATTGACTTAACCAAAACTTTAGTATTACCCAAACCAGAACTTCAGTGTTACATAAACCAAAACGTTAGTATTAACTAAACCTAAACATCAGTATTAACTAAACCAAAACTTTAGTATTACCTAAACCTAAACATCATTATTAACTAAACCAGAACTTCAGTGTAACCTAAACCAAAACGTTAGTATTAACTAAACCTAAACATCAGTATTAGCTTAACCAAAACTTTAGTATTAATTAAACCTAAACATCATTAACTAAACCAGAACTTCAGTGTAACCTAAACCAAAACGGTAGTATTAACTAAACCTAAACATCAGTATTAACTAAACCAAAACTTTAGTATTAACTAAACCTAAACATCAGTATTGACTAACCAAAACTTTAGTATTAACTAAACCAGAACTTGAGAGTTACCTAAAACAAAACTTTAGTATTAACTAAACCTAAACTTCAGTGTTAACTAAACCAAAACCTCAGCATTAACTAAACCAAAACTtcagtttaaactaaactaatgtTTCAGTATCATCTATGCCAGTATTTCTGTGTTAACTAAAccaaaacattattattagcaAAACCAAAACTTCAGCTTTCCATCTGCTTTCCATGCCCTCGCCGGGCATTACCAGATGTTGTCGCTGGTAAGGCAACGCCTGCAGCAGGCGGTGGATCACAAGCCTTTCGACTACCTGGGCAACTTATAGATGATCTACAAGCAGCCAAAGGCAGGCCAGGTCAATTAGAGCTTTGGCCTGCTCTTTGGCTGAGGCGCACTCATCCAGGGGCCACTGCCGTGAGCGGCGCAGCGCACACTTTCCGTTTCGGCTGGGGGAAGCGCTCTCCGTGAGCCGGAGTTGATGACGACCAGTTCCTCGAGCTGACGGTGAATGA
>TCONS_00006131
atttcggacgcaTCATTCTTACATAACACGTAAAAATGCCGCTGAAGTGACTTTTATGGCAGGAGATGATGTTCATGTGTTTACTTCTTCATATATCAAGATGACGGACTGGAAACACCACAAGCGAGAAAAACCACTTCAGGGAGACTAAAtaCATAGAAGCACCGCAGCGTCCGTCTCTGCCCACTTCACCAACCATTACTGTTAAACGCAGCAGATAATGTCCTGAGTAAAGCCGATGTCCTTCAGGGAAATAAACACGCTCATCGATGGAGGTCTAGAGAAACAGCCGGCGGCCTGAACATTTGTTCTGTGGCATCTTCATTATTTGCAGGCCATTATGATGCGTCACGCCTCGTCTCCTGTAGGCTTCACTTTCAACAGCCAAGGGTCTTTTGAAGGAGAAGAGCCGGAGAGGGTTCAATCGATCCGCTCCTGCGAGAACATGTGGAAATGGGCTCCTCTTTTATTTAGCAGAGGCCTGTCAGTCATCAAAGACACGGCAGGATCATACGCCAATGTAAATGAAGATCAGGAGTGCTGGGAAGGTGAACTTGTTGGTCCGACTTCTCCATCATTAGTTCCGGTTTtatgtaggaaaaaaaaaacgtggaGCTGAAGAAATAATGGAAATGATATGCACGAGCTTGAAGGCCATGGCAATCGACTTTCACATTCAACATTCATCTTAAGAGACGCTCAAAAGTTCTCATGGTCGCGATATGGAAtagaaaatgtctttttttctttcttttttttttacgtgaTAAAAGAGCCGTGTGCTTGTCTCACCTTGACAAGGCCATTGTGTGAGAAGAGAAAGCACAGGAATCACAATATtagatcattattattttttgtcaagCATGAGGAGTCAAGAGTGGGAAAATTACAATTCAGGTTTAACCAAACTGTAATAAGTGTAACTAAACCTAAATTTAATGACCTAAATCTTAACCTCAGTAATAACTGAACCAAAACTACAGTATTAAGTAAATAATGTTTCTGTGTCcaaaattttattaataacttcAACAAAGCCAAAATCTCAGCATTGACTTAACCAAAACTTTAGTATTACCCAAACCAGAACTTCAGTGTTACATAAACCAAAACGTTAGTATTAACTAAACCTAAACATCAGTATTAACTAAACCAAAACTTTAGTATTACCTAAACCTAAACATCATTATTAACTAAACCAGAACTTCAGTGTAACCTAAACCAAAACGTTAGTATTAACTAAACCTAAACATCAGTATTAGCTTAACCAAAACTTTAGTATTAATTAAACCTAAACATCATTAACTAAACCAGAACTTCAGTGTAACCTAAACCAAAACGGTAGTATTAACTAAACCTAAACATCAGTATTAACTAAACCAAAACTTTAGTATTAACTAAACCTAAACATCAGTATTGACTAACCAAAACTTTAGTATTAACTAAACCAGAACTTGAGAGTTACCTAAAACAAAACTTTAGTATTAACTAAACCTAAACTTCAGTGTTAACTAAACCAAAACCTCAGCATTAACTAAACCAAAACTtcagtttaaactaaactaatgtTTCAGTATCATCTATGCCAGTATTTCTGTGTTAACTAAAccaaaacattattattagcaAAACCAAAACTTCAGCTTTCCATCTGCTTTCCATGCCCTCGCCGGGCATTACCAGATGTTGTCGCTGGTAAGGCAACGCCTGCAGCAGGCGGTGGATCACAAGCCTTTCGACTACCTGGGCAACTTATAGATGATCTACAAGCAGCCAAAGGCAGGCCAGGTCAATTAGAGCTTTGGCCTGCTCTTTGGCTGAGGCGCACTCATCCAGGGGCCACTGCCGTGAGCGGCGCAGCGCACACTTTCCGTTTCGGCTGGGGGAAGCGCTCTCCGTGAGCCGGAGTTGATGACGACCAGTTCCTCGAGCTGACGGTGAATGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117289

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005591 False 675 lncRNA 0.37 3 42799115 42870149
TCONS_00006129 False 1924 lncRNA 0.40 4 42819761 42869956
TCONS_00006130 False 1768 lncRNA 0.40 2 42819956 42833064
TCONS_00006131 True 1948 lncRNA 0.40 4 42819956 42869963

Neighbor

gene id symbol gene type direction distance location
XLOC_003052 wdr45 coding downstream 22771 42762454 ~ 42776344 (-)
XLOC_003051 zgc:100918 coding downstream 39197 42740862 ~ 42759918 (-)
XLOC_003050 stc1l coding downstream 113603 42677891 ~ 42685512 (-)
XLOC_003049 march5l coding downstream 279342 42500895 ~ 42519773 (-)
XLOC_003048 NA coding downstream 325176 42470616 ~ 42473939 (-)
XLOC_003054 FP236542.1 coding upstream 3014 42873163 ~ 42882215 (-)
XLOC_003055 CU326366.2 coding upstream 17055 42887204 ~ 42898220 (-)
XLOC_003056 ACOT12 coding upstream 32942 42903091 ~ 42923385 (-)
XLOC_003057 CU326366.3 coding upstream 41784 42911933 ~ 42912047 (-)
XLOC_003058 ssbp2 coding upstream 60204 42930353 ~ 43029001 (-)
XLOC_003047 NA non-coding downstream 444011 42313639 ~ 42355104 (-)
XLOC_003040 NA non-coding downstream 812520 41982909 ~ 41986595 (-)
XLOC_003029 CU929265.1 non-coding downstream 1895878 40903121 ~ 40903237 (-)
XLOC_003028 NA non-coding downstream 1942018 40851137 ~ 40857097 (-)
XLOC_003062 NA non-coding upstream 583022 43453171 ~ 43540184 (-)
XLOC_003063 NA non-coding upstream 614478 43484627 ~ 43496216 (-)
XLOC_003064 dre-mir-9-2 non-coding upstream 665811 43535960 ~ 43536095 (-)
XLOC_003068 CT583727.1 non-coding upstream 961733 43831882 ~ 43832668 (-)

Expression


Co-expression Network