Fish Transcriptome and Expression Database

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model fish

XLOC_003057 (CU326366.3)

Basic Information

Item	Value
gene id	XLOC_003057
gene name	CU326366.3
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007121.7
NCBI id	CM002894.2
chromosome length	45420867
location	42911933 ~ 42912047 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005596
gctggcagctagctctctgcaactctcacataatcgctcactgaagctaagcagagctgcaacctgtcagtacctgaatgggagaccacatgggaaagctacgttgctgccagaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000111089

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00005596	True	115	rRNA	0.52	1	42911933	42912047

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_003055	CU326366.2	coding	downstream	13713	42887204 ~ 42898220 (-)
XLOC_003054	FP236542.1	coding	downstream	29718	42873163 ~ 42882215 (-)
XLOC_003053	FP236542.2	coding	downstream	41784	42799115 ~ 42870149 (-)
XLOC_003052	wdr45	coding	downstream	135589	42762454 ~ 42776344 (-)
XLOC_003051	zgc:100918	coding	downstream	152015	42740862 ~ 42759918 (-)
XLOC_003058	ssbp2	coding	upstream	18306	42930353 ~ 43029001 (-)
XLOC_003059	tmem167a	coding	upstream	198741	43110788 ~ 43117644 (-)
XLOC_003060	hapln1b	coding	upstream	357871	43269918 ~ 43334999 (-)
XLOC_003061	edil3b	coding	upstream	443848	43355895 ~ 43404027 (-)
XLOC_003062	NA	coding	upstream	541124	43453171 ~ 43540184 (-)
XLOC_003048	NA	non-coding	downstream	437994	42470616 ~ 42473939 (-)
XLOC_003047	NA	non-coding	downstream	556829	42313639 ~ 42355104 (-)
XLOC_003040	NA	non-coding	downstream	925338	41982909 ~ 41986595 (-)
XLOC_003029	CU929265.1	non-coding	downstream	2008696	40903121 ~ 40903237 (-)
XLOC_003063	NA	non-coding	upstream	572580	43484627 ~ 43496216 (-)
XLOC_003064	dre-mir-9-2	non-coding	upstream	623913	43535960 ~ 43536095 (-)
XLOC_003068	CT583727.1	non-coding	upstream	919835	43831882 ~ 43832668 (-)
XLOC_003075	CABZ01085662.1	non-coding	upstream	1330189	44242236 ~ 44253104 (-)

Expression

Co-expression Network