XLOC_003058 (ssbp2)


Basic Information

Item Value
gene id XLOC_003058
gene name ssbp2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 42930353 ~ 43029001 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005597
CGACCAATGGGAGGCATCGCTCCTGCAGTCGCCATGGTGACGGGGTTGTGTCCGGGGAGGCTGTGATGGGTTGACAGGTGCGTGACAATCGGAGCTCTCTGCAAGCATGTACGCCAAAGGCAAGAGTAACAACGTACCGTCCGACAGCCAAGCGAGGGAAAAgCTAGCGCTCTACGTATACGAGTACTTGTTACATGTAGGAGCCCAGAAGTCGGCACAGACCTTCCTGTCAGAGATAAGATGGGAGAAGAACATAACGTTAGGAGAACCTCCTGGATTTCTACATTCATGGTGGTGTGTATTCTGGGATTTGTATTGTGCGGCACCTGAGCGGAGAGAAAACTGCGAGCATTCCAGTGAAGCCAAGGCATTTCATGACTACAGCGCAGCAGCGGCTCCAAGTCCTGTTCTTGGAAACATGCAGCCAGGAGAAGGGATGCCAGTCGGCCCTGTTCCTCCAGGCTTCtttcagCCTTTTATGTCGTCTCGTTATCCCGGTGGCCCCAGACCTGCTCTCAGAATACCAAACCAGGCGTTAGCTGGAGTTCCGGGAAACCAGCCGCTGATCGACCCGTCACGACAGCAGGGTCATCCAAATATGGCCGGGGCTATGCAGAGAATGACTCCGCCCAGAGGGATGGTTCCTCTGGGGCCGCAGtaTGGAGGAGGCATGAGGCCCCCACTCAACGCCCTCGGTGGACCCCCAATGAACATGGGTCCTGGAGGAAGACCGTGGCCCAATCCACCAAACTCCAACTCGATCCCGTATTCATCGGCGTCTCCTGGCAGTTACGTGGGTCCGCCGGGAGGAGGAGGGCCGCCAGGGACACCCATCATGCCCAGCCCTGCAGACTCAACAAACTCTGGAGAAAACATGTACACCATGATCAACGCAGTGCCGCCCGGAGCAAACCGGCAAAATtttcctctgggtgcggGTGGCGAGGGGCCGTTGGGGGGTCTGGCAGGACTGGAGCCGCATCATATGAACGGATCATTAGGCTCAGCTGATATGGACAGTATGCCCAAAAATTCTCCTGGTAACCTGAGCATGAGCAACCAGCCCGGGACGCCTCGAGACGATGGGGAAATGGCCGGAAATTTCCTCAACCCTTTCCAGAACGAGAGCTATTCTCCCAACATGACCATGAGTGTGTGAAGAGCTCTTCTGTTGGAGATCCAGCACTGCTTATGGATGTTCTGAAGCGCTGTAGCCTGAGCTCTTCTGCTCTCTGAAGATCAAGGGTCCAAGACTCTCCGTCCTCCTCTCTCCTTCTGCCGTTTCTTTCATTTCCAGAATCATCCTTTCAGCCGAAGCCGTCCAGATGATGAAACAACAACCTGTCTATATTTACCTACAGttctgtgcaaaagtcttaggcctCTAAAATTTTAACCTCCCAATTAAAGGTTTAAAGTGGGTTATTTCTATATTTTCCTGTAGCATGTCAGTTTCAAGGATTAATTTACATtcccaaacattatttttgtcatatAACTGTTAGATTATTTGCAGTctttctggaatgacatgaagaagcAGAACAAACTGAGACAAACTTAATCCAGAAGATCTTAGGCAACATCTCCAAGATACTTCAGACAATCGCCATAAAAAGCTGCGGTACTGTTTAAAGTTTTGGGCACTTGTGTAAAAAAGCTGTGAAATAaagatgctttaaaaaataatgcataaatacattttattaatcaataaaCTTATTTAGCATTTGATCTGAGCACACTTTGCATTTGAAACACTTGCTACTCTTGCCCAGAGTTTCTCAAGTAACTTTGCATGTGGGTTTTCTGAAGCATCTAGAGATATTTGCCAAGTTCTTCTCGGTTTGTTTTGCTTCTTCTTGTCATTCCAGACAGCCTGGATATAATCTCACAGCAGAAAtacaattaatgacaaaaatattgtTGGAGTTTCCAAATAGAGGCCTCTTTTTTTAGTGACTGGCTTCTTGGACTTACCTCCACTTTACATTTGGAAAGAATTAGAAATGCCACCTCGGGGAACAATGCAAAATTTGATAAAATGTGggatccagttttttttttaaagactttaaagACTAGTAATGTTATTTAAGTTCTGAAGATttgtaagttgttgtttttttctctctttacaTCCATTGTGATCTCTTTTTGTAGGTCATATATGTCTTGTATGTGGCCGTTTTTCCTTGTTTCAtgctttatttaacattttgcaCAGTTTGTTACACAATGGGGATTGTCTGTCTGTTCTCCGTCtccaaaaacaataataaaaaaatgtttggaa
>TCONS_00005598
gaagGAGGGGGGTCTCTATAATGAAGACAGCGCGCGGACAGACTTTTAACAAGCAGATGATGATACGCTCTGCGCCTTTGGATGCTGTGTTGTCTCTGACAGCGCTTGTAGATCATGCTAGAAAAGTTGTTGTCAGTTATCAGTCACGCGCTGCTTGAATGTCTTGCGTCCAATTAACGCGACGCGCAGTCTTGAGTGAACGCGCGGAAGTATATTATAAACTTTTCATGTTGTGGACTATTGGGGAAAGGAGTCAGTCTTGTTTAAGCATCTTTAAGCAATGTTTATTCAAAGTTGTCACAGGTAACCGAACGCATCGTGAGGTAACTTCACGGATTGCTGCATCTCATTTGTGTATTGGAATTGAGgCTAGCGCTCTACGTATACGAGTACTTGTTACATGTAGGAGCCCAGAAGTCGGCACAGACCTTCCTGTCAGAGATAAGATGGGAGAAGAACATAACGTTAGGAGAACCTCCTGGATTTCTACATTCATGGTGGTGTGTATTCTGGGATTTGTATTGTGCGGCACCTGAGC

Function

symbol description
ssbp2 Predicted to enable single-stranded DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human SSBP2 (single stranded DNA binding protein 2).

GO:

id name namespace
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0003697 single-stranded DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-197 Predicted to enable single-stranded DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human SSBP2 (single stranded DNA binding protein 2).

Ensembl:

ensembl_id ENSDARG00000099727

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005597 False 2296 mRNA 0.46 17 42930353 43029001
TCONS_00005598 True 538 processed_transcript 0.46 4 42992846 43028806

Neighbor

gene id symbol gene type direction distance location
XLOC_003056 ACOT12 coding downstream 6968 42903091 ~ 42923385 (-)
XLOC_003057 CU326366.3 coding downstream 18306 42911933 ~ 42912047 (-)
XLOC_003055 CU326366.2 coding downstream 32133 42887204 ~ 42898220 (-)
XLOC_003054 FP236542.1 coding downstream 48138 42873163 ~ 42882215 (-)
XLOC_003053 FP236542.2 coding downstream 60204 42799115 ~ 42870149 (-)
XLOC_003059 tmem167a coding upstream 81787 43110788 ~ 43117644 (-)
XLOC_003060 hapln1b coding upstream 240917 43269918 ~ 43334999 (-)
XLOC_003061 edil3b coding upstream 326894 43355895 ~ 43404027 (-)
XLOC_003062 NA coding upstream 424170 43453171 ~ 43540184 (-)
XLOC_003063 NA coding upstream 455626 43484627 ~ 43496216 (-)
XLOC_003048 NA non-coding downstream 456414 42470616 ~ 42473939 (-)
XLOC_003047 NA non-coding downstream 575249 42313639 ~ 42355104 (-)
XLOC_003040 NA non-coding downstream 943758 41982909 ~ 41986595 (-)
XLOC_003064 dre-mir-9-2 non-coding upstream 506959 43535960 ~ 43536095 (-)
XLOC_003068 CT583727.1 non-coding upstream 802881 43831882 ~ 43832668 (-)
XLOC_003075 CABZ01085662.1 non-coding upstream 1213235 44242236 ~ 44253104 (-)

Expression


Co-expression Network