XLOC_003059 (tmem167a)


Basic Information

Item Value
gene id XLOC_003059
gene name tmem167a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 43110788 ~ 43117644 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005599
CCGACAGGGGATAGCAAGATGGTAAGcgcaaaagtgttattttggagTAGTTAAGAGATGCGTGTtctgCCATATTTAATTTCCAGAGTCTGTTGACGGTCATCTTACTGCTCATCTGCACATGCGCGTACATACGGTCCCTCACTCCCAGCCTGTTGGACAAGAACAAAACAGGATTCCTTGGAATATTCTGGAAGTGTGCAAGAATAGGCGAGCGCAAGAGCCCGTACGTAGCGTTTTGCTGCATCGTCATGGCCTTCACCATCTTATTCTCAGAGTAACGTCGCAGGATTTGAATAAGATGATTTCCAAAAACAGCTTCGAGACTCTCCAGCAGGGAACAAGATGTGTATTTAGGTGACATTCAGAAGAGTTAATGCATGTGAAAGAGCTCTCGATCTCCAGAGTAAGTGTTTCTCAGCCTCACGGAGCTGCTTGTACATACAGATTTTCAGTTTTTGGTCTCCACAATGAAGCTCCGGTTGTCTTTGACTCATGAACTcaatgctgttgttgttgttgttggagctGACATGTTTAACGCGGGACATCGAGGATGAATCTGGATATCATGCTATCATTGTTCACTTAAATCTGTTGACTCTTTTACATGTGCCGATGTTCgcattaaagatgaatttatTACTGAACGTTCATTTTTGTGTGTATTAGAGAATAAGATTGTTGATGTGACTGATACTGATTGCTGATTAATATGATTCTAATGTGAATACTGTTCGATTTCTGTATCATTAGTAAGTAAGATGAGATTAATGAAAATGATTTAATcagcagaatgtttttttttgttttgttttatttttacactcCTGTGGTttaaacttaaaggtgcagtatgtatgtTTGACACTCAggggttgaactaggtattgcattcctggatcaaaacaaacacaagcgcaggttgccagattgacgaccaaGGAGCGAGTCTGACAATCGAGCCTAAAGGCGGATTTAAACTGTAGGGAtggtttacagtttaacccaaagaatgactaGTCTGgtagccggagtcagagatttaaataaataaatcaagtttactgaa
>TCONS_00005600
GACGTCATTTCCATCTTACACCGGAAGTGTGAGTTGGCCGACAGGGGATAGCAAGATGtctgCCATATTTAATTTCCAGAGTCTGTTGACGGTCATCTTACTGCTCATCTGCACATGCGCGTACATACGGTCCCTCACTCCCAGCCTGTTGGACAAGAACAAAACAGGATTCCTTGGAATATTCTGGAAGTGTGCAAGAATAGGCGAGCGCAAGAGCCCGTACGTAGCGTTTTGCTGCATCGTCATGGCCTTCACCATCTTATTCTCAGAGTAACGTCGCAGGATTTGAATAAGATGATTTCCAAAAACAGCTTCGAGACTCTCCAGCAGGGAACAAGATGTGTATTTAGGTGACATTCAGAAGAGTTAATGCATGTGAAAGAGCTCTCGATCTCCAGAGTAAGTGTTTCTCAGCCTCACGGAGCTGCTTGTACATACAGATTTTCAGTTTTTGGTCTCCACAATGAAGCTCCGGTTGTCTTTGACTCATGAACTcaatgctgttgttgttgttgttggagctGACATGTTTAACGCGGGACATCGAGGATGAATCTGGATATCATGCTATCATTGTTCACTTAAATCTGTTGACTCTTTTACATGTGCCGATGTTCgcattaaagatgaatttatTACTGAACGTTCATTTTTGTGTGTATTAGAGAATAAGATTGTTGATGTGACTGATACTGATTGCTGATTAATATGATTCTAATGTGAATACTGTTCGATTTCTGTATCATTAGTAAGTAAGATGAGATTAATGAAAATGATTTAATcagcagaatgtttttttttgttttgttttatttttacactcCTGTGGTttaaacttaaaggtgcagtatgtatgtTTGACACTCAggggttgaactaggtattgcattcctggatcaaaacaaacacaagcgcaggttgccagattgacgaccaaGGAGCGAGTCTGACAATCGAGCCTAAAGGCGGATTTAAACTGTAGGGAtggtttacagtttaacccaaagaatgactaGTCTGgtagccggagtcagagatttaaataaataaatcaagtttactgaa
>TCONS_00005601
tctgCCATATTTAATTTCCAGAGTCTGTTGACGGTCATCTTACTGCTCATCTGCACATGCGCGTACATACGGTCCCTCACTCCCAGCCTGTTGGACAAGAACAAAACAGGGCGAGCGCAAGAGCCCGTACGTAGCGTTTTGCTGCATCGTCATGGCCTTCACCATCTTATTCTCAGAGTAACGTCGCAGGATTTGAATAAGATGATTTCCAAAAACAGCTTCGAGACTCTCCAGCAGGGAACAAGATGTGTATTTAGGTGACATTCAGAAGAGTTAATGCATGTGAAAGAGCTCTCGATCTCCAGAGTAAGTGTTTCTCAGCCTCACGGAGCTGCTTGTACATACAGATTTTCAGTTTTTGGTCTCCACAATGAAGCTCCGGTTGTCTTTGACTCATGAACTcaatgctgttgttgttgttgttggagctGACATGTTTAACGCGGGACATCGAGGATGAATCTGGATATCATGCTATCATTGTTCACTTAAATCTGTTGACTCTTTTACATGTGCCGATGTTCgcattaaagatgaatttatTACTGAACGTTCATTTTTGTGTGTATTAGAGAATAAGATTGTTGATGTGACTGATACTGATTGCTGATTAATATGATTCTAATGTGAATACTGTTCGATTTCTGTATCATTAG

Function

symbol description
tmem167a Predicted to be involved in intracellular transport and protein secretion. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Orthologous to human TMEM167A (transmembrane protein 167A).

GO:

id name namespace
GO:0009306 protein secretion biological_process
GO:0046907 intracellular transport biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050320-29 Predicted to be involved in intracellular transport and protein secretion. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Orthologous to human TMEM167A (transmembrane protein 167A).

Ensembl:

ensembl_id ENSDARG00000035914

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005599 False 1072 mRNA 0.40 4 43110788 43117607
TCONS_00005600 False 1065 mRNA 0.41 4 43110788 43117644
TCONS_00005601 True 656 mRNA 0.42 2 43111104 43113731

Neighbor

gene id symbol gene type direction distance location
XLOC_003058 ssbp2 coding downstream 81787 42930353 ~ 43029001 (-)
XLOC_003056 ACOT12 coding downstream 187403 42903091 ~ 42923385 (-)
XLOC_003057 CU326366.3 coding downstream 198741 42911933 ~ 42912047 (-)
XLOC_003055 CU326366.2 coding downstream 212568 42887204 ~ 42898220 (-)
XLOC_003054 FP236542.1 coding downstream 228573 42873163 ~ 42882215 (-)
XLOC_003060 hapln1b coding upstream 152274 43269918 ~ 43334999 (-)
XLOC_003061 edil3b coding upstream 238251 43355895 ~ 43404027 (-)
XLOC_003062 NA coding upstream 335527 43453171 ~ 43540184 (-)
XLOC_003063 NA coding upstream 366983 43484627 ~ 43496216 (-)
XLOC_003064 dre-mir-9-2 coding upstream 418316 43535960 ~ 43536095 (-)
XLOC_003053 FP236542.2 non-coding downstream 240639 42799115 ~ 42870149 (-)
XLOC_003048 NA non-coding downstream 636849 42470616 ~ 42473939 (-)
XLOC_003047 NA non-coding downstream 755684 42313639 ~ 42355104 (-)
XLOC_003040 NA non-coding downstream 1124193 41982909 ~ 41986595 (-)
XLOC_003068 CT583727.1 non-coding upstream 714238 43831882 ~ 43832668 (-)
XLOC_003075 CABZ01085662.1 non-coding upstream 1124592 44242236 ~ 44253104 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location