XLOC_003061 (edil3b)


Basic Information

Item Value
gene id XLOC_003061
gene name edil3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 43355895 ~ 43404027 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005605
GAAAAAACAATTAGTAATAGATTTCTTAACAtattcattcatctttgttaatgttctttaagttaaataacattagttCATAACTCGTGGTGgattaactaatgtcaacaacTGTAGCACATCTTTGGATTTGAATGCATCAATGGTTAATGTTGCaccatgattaataaatgctttacaacatTATTCATACTCTATTAACACGTTAAATAATGGAGCATTATTCTACAGTCTTTTTTGCATATTAAGCAGATGGCTCATGCTCTTACAGCTGATTCAGTATTTAGTTTGATgctcatattaaaatattaatgagtGATCCAGCAATCAGCCTGCAGTGAACTCTGGGAATGAGATTTGTGGATCTGAGATCTTTTTGTGCTTCAGGGCCCTGCCGGCCAAACCCGTGTCACAATGGAGGCCTGTGTGAACTTAATCAGACCGACCGCGGAGACGCTTTACTGGGATATTTGTGCAGGTGTCCGGCTGGATTCAACGGGGTTCACTGCCAACACAATGTAAACGAATGTGAGAAAAACCCCTGCAGAAATGGAGGAAGCTGCACAGACCTGCAAGCAAACTACACCTGTCTGTGTCCTGGAGAATACATGGGACAAAACTGTCAGTACAAATGTTCCGGGCCTTTAGGGATGGAAGGAGGAATCATCTCGAACCAGCAGATTACAGCTTCATCTACACACCGAGCTCTGTTCGGCCTGCAGAAATGGTTCCCGTACTTCGCCAGACTCAATAAGAAAGGCCTGGTCAATGCCTGGAGCGCGGCCGAGGGGGACCGATATCCTTGGATTCAGATTAATCTGCTGCGCAGGATGAGGGTCACCGCACTCATCACACAGGGCGCCAAGCGGATCGGGAGCCCCGAATATGTGAAGTCATTTAAAGTGGCGTACAGTGAGGACGGGAAGGCCTGGAGCTTATTTAAAGTCAAGGGCACGGATGAGGACATGATATTCACTGGAAACACCGACAACAGCTCTCCCTCTGTGAACTCCTTCAGTCCACCAATCGAGGCGCAGTATATCCGCGTTTACCCTCAAATCTGCCGGAAACACTGTACTCTGCGCATGGAGCTGCTGGGGTGTGAACTCACAGGATGTTCAGAGCCCATGGGGATGAAGACGGGACATATCCAGGACTATCAGCTCAGCTCGTCCAGTGTGTTTCAGACCCTCAGCATGGACATGTTCTCCTGGGACCCGTCCAAAGCCAGACTGGACAAACAGGGCAAGGTGAACGCATGGACATCCGCGCACAATGACCAGTCACAGTGGCTGCAGATAGATTTGCTGATTCCCACTAAAGTCACAGGAATCATCACACAAGGAGCCAAAGATTTCGGACACGTGCAGTTTGTGGGTTCATTTAAACTGGCGTTCAGCAACGATGGAGAGAAGTGGATCATTTATCAGGATGAGAAACAGCACAAGGATAAGATCTTCCAGGGAAACTTTGACAACGAGACGCACAGAAAGAACGTGATCGATCCGCCGATTTACGCTCGGTTTGTCCGCATTCTTCCGTGGTCGTGGTATGGACGGATCACCGTACGGATGGAGCTGCTGGGATGTCCGGAGGAACAGTGA
>TCONS_00005606
CTGCTCTCCATCTTCATCATCACTGCAGTGAAGctgaagcagcagcagcatcagCACCAGCGCGAGTCTCTCTGCATTTCATCCGCATCTCTGCTCCACACACCGCGGATTCAGGACTGCAGGACAAACCGCGGACACACGAGAGTTTCCCGCGATGCTGCCCGTGTTTTTGTTGCTGTTCGTCCGCACTGGCGCGTCCCTCCCGCATCCGACATCCGCGGGTGAAGTATGTGAACCAGTTCCCTGTGAGAACAGCGCTGACTGTCCCACAACACCAGCGGATGAAAATGGGTCCTCAGCGTCAGACTGGAAAGAACAATCTATAATTGGGCCCTGCCGGCCAAACCCGTGTCACAATGGAGGCCTGTGTGAACTTAATCAGACCGACCGCGGAGACGCTTTACTGGGATATTTGTGCAGGTGTCCGGCTGGATTCAACGGGGTTCACTGCCAACACAATGTAAACGAATGTGAGAAAAACCCCTGCAGAAATGGAGGAAGCTGCACAGACCTGCAAGCAAACTACACCTGTCTGTGTCCTGGAGAATACATGGGACAAAACTGTCAGTACAAATGTTCCGGGCCTTTAGGGATGGAAGGAGGAATCATCTCGAACCAGCAGATTACAGCTTCATCTACACACCGAGCTCTGTTCGGCCTGCAGAAATGGTTCCCGTACTTCGCCAGACTCAATAAGAAAGGCCTGGTCAATGCCTGGAGCGCGGCCGAGGGGGACCGATATCCTTGGATTCAGATTAATCTGCTGCGCAGGATGAGGGTCACCGCACTCATCACACAGGGCGCCAAGCGGATCGGGAGCCCCGAATATGTGAAGTCATTTAAAGTGGCGTACAGTGAGGACGGGAAGGCCTGGAGCTTATTTAAAGTCAAGGGCACGGATGAGGACATGATATTCACTGGAAACACCGACAACAGCTCTCCCTCTGTGAACTCCTTCAGTCCACCAATCGAGGCGCAGTATATCCGCGTTTACCCTCAAATCTGCCGGAAACACTGTACTCTGCGCATGGAGCTGCTGGGGTGTGAACTCACAGGATGTTCAGAGCCCATGGGGATGAAGACGGGACATATCCAGGACTATCAGCTCAGCTCGTCCAGTGTGTTTCAGACCCTCAGCATGGACATGTTCTCCTGGGACCCGTCCAAAGCCAGACTGGACAAACAGGGCAAGGTGAACGCATGGACATCCGCGCACAATGACCAGTCACAGTGGCTGCAGATAGATTTGCTGATTCCCACTAAAGTCACAGGAATCATCACACAAGGAGCCAAAGATTTCGGACACGTGCAGTTTGTGGGTTCATTTAAACTGGCGTTCAGCAACGATGGAGAGAAGTGGATCATTTATCAGGATGAGAAACAGCACAAGGATAAGATCTTCCAGGGAAACTTTGACAACGAGACGCACAGAAAGAACGTGATCGATCCGCCGATTTACGCTCGGTTTGTCCGCATTCTTCCGTGGTCGTGGTATGGACGGATCACCGTACGGATGGAGCTGCTGGGATGTCCGGAGGAACAGTGA
>TCONS_00005607
AAACCCGTGTCACAATGGAGGCCTGTGTGAACTTAATCAGACCGACCGCGGAGACGCTTTACTGGGATATTTGTGCAGGTGTCCGGCTGGATTCAACGGGGTTCACTGCCAACACAATGTAAACGAATGTGAGAAAAACCCCTGCAGAAATGGAGGAAGCTGCACAGACCTGCAAGCAAACTACACCTGTCTGTGTCCTGGAGAATACATGGGACAAAACTGTCAGTACAAATGTTCCGGGCCTTTAGGGATGGAAGGAGGAATCATCTCGAACCAGCAGATTACAGCTTCATCTACACACCGAGCTCTGTTCGGCCTGCAGAAATGGTTCCCGTACTTCGCCAGACTCAATAAGAAAGGCCTGGTCAATGCCTGGAGCGCGGCCGAGGGGGACCGATATCCTTGGATTCAGATTAATCTGCTGCGCAGGATGAGGGTCACCGCACTCATCACACAGGGCGCCAAGCGGATCGGGAGCCCCGAATATGTGAAGTCATTTAAAGTGGCGTACAGTGAGGACGGGAAGATATTCACTGGAAACACCGACAACAGCTCTCCCTCTGTGAACTCCTTCAGTCCACCAATCGAGGCGCAGTATATCCGCGTTTACCCTCAAATCTGCCGGAAACACTGTACTCTGCGCATGGAGCTGCTGGGGTGTGAACTCACAGGATGTTCAGAGCCCATGGGGATGAAGACGGGACATATCCAGGACTATCAGCTCAGCTCGTCCAGTGTGTTTCAGACCCTCAGCATGGACATGTTCTCCTGGGACCCGTCCAAAGCCAGACTGGACAAACAGGGCAAGGTGAACGCATGGACATCCGCGCACAATGACCAGTCACAGTGGCTGCAGATAGATTTGCTGATTCCCACTAAAGTCACAGGAATCATCACACAAGGAGCCAAAGATTTCGGACACGTGCAGTTTGTGGGTTCATTTAAACTGGCGTTCAGCAACGATGGAGAGAAGTGGATCATTTATCAGGATGAGAAACAGCACAAGGATAAGATCTTCCAGGGAAACTTTGACAACGAGACGCACAGAAAGAACGTGATCGATCCGCCGATTTACGCTCGGTTTGTCCGCATTCTTCCGTGGTCGTGGTATGGACGGATCACCGTACGGATGGAGCTGCTGGGATGTCCGGAGGA

Function

symbol description
edil3b Predicted to enable calcium ion binding activity. Orthologous to human EDIL3 (EGF like repeats and discoidin domains 3).

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0005178 integrin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-42 Predicted to enable calcium ion binding activity. Orthologous to human EDIL3 (EGF like repeats and discoidin domains 3).

Ensembl:

ensembl_id ENSDARG00000060877

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005605 False 1604 mRNA 0.47 8 43355895 43392667
TCONS_00005606 False 1546 mRNA 0.53 11 43355895 43404027
TCONS_00005607 True 1155 mRNA 0.52 8 43355902 43392267

Neighbor

gene id symbol gene type direction distance location
XLOC_003060 hapln1b coding downstream 20896 43269918 ~ 43334999 (-)
XLOC_003059 tmem167a coding downstream 238251 43110788 ~ 43117644 (-)
XLOC_003058 ssbp2 coding downstream 326894 42930353 ~ 43029001 (-)
XLOC_003056 ACOT12 coding downstream 432510 42903091 ~ 42923385 (-)
XLOC_003057 CU326366.3 coding downstream 443848 42911933 ~ 42912047 (-)
XLOC_003062 NA coding upstream 49144 43453171 ~ 43540184 (-)
XLOC_003063 NA coding upstream 80600 43484627 ~ 43496216 (-)
XLOC_003064 dre-mir-9-2 coding upstream 131933 43535960 ~ 43536095 (-)
XLOC_003065 mef2ca coding upstream 140787 43544814 ~ 43655449 (-)
XLOC_003066 cetn3 coding upstream 301768 43705795 ~ 43759532 (-)
XLOC_003053 FP236542.2 non-coding downstream 485746 42799115 ~ 42870149 (-)
XLOC_003048 NA non-coding downstream 881956 42470616 ~ 42473939 (-)
XLOC_003047 NA non-coding downstream 1000791 42313639 ~ 42355104 (-)
XLOC_003040 NA non-coding downstream 1369300 41982909 ~ 41986595 (-)
XLOC_003068 CT583727.1 non-coding upstream 427855 43831882 ~ 43832668 (-)
XLOC_003075 CABZ01085662.1 non-coding upstream 838209 44242236 ~ 44253104 (-)

Expression


Co-expression Network