XLOC_003062


Basic Information

Item Value
gene id XLOC_003062
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 43453171 ~ 43540184 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006132
CGCAGTTACATCAAGTTGTGCGGTTAAGTGCAATGTTAATTTAGTCACATGTCTATTGCAGAAGAAGTAAGAAGGGGTGGATCATAAATCCACGACCCCCCCCTCCTTCTTAAACCCACCCAAACTCCCCCCTCGAGTCTCCAAAAATCACTGCACTTTCCATTCGCCGTGGAGCTCCAGCAGAGGTGAAGTTcagctctcctcctcctcctcctcctccttcatcatGTGCACGGAATAACACGCATCCAGGCCTCGTGTTTCATTAGCAAACATGCCGAGGAAGGATTTGCTGGATGTGATTTCTAAAGAGGATCTCCGTTTGGCCATTTCACGTCCAGATGAGCGGAGCATtggCCTGCAGGAAGATGTGAAGGCAGCACTGCTCATCAGGCTGATGCAACATGAGCCGTCTTcgaagagaaccccagacttcccctTTCCCCAGAcccttcctccagctcctctgggggaaTCCCGAGgagttcccaggccagccgagagacagctccctaggtaggcatccaagAGGAAATtgaaac
>TCONS_00006134
CTCCCCCCTCGAGTCTCCAAAAATCACTGCACTTTCCATTCGCCGTGGAGCTCCAGCAGAGGTGAAGTTcagctctcctcctcctcctcctcctccttcatcatGTGCACGGAATAACACGCATCCAGGCCTCGTGTTTCATTAGCAAACATGCCGAGGAAGGATTTGCTGGATGTGATTTCTAAAGAGGATCTCCGTTTGGCCATTTCACGTCCAGATGAGCGGAGCATGTCTGCAGAAGAATGGAAGAGAGAGGGGAATCATGGGAAGGATTTCAGAGcggtaaaatatgtaatatattgtaCATAAGTGAAATAAATATGTGTTATATATgtgtaatatttacagtatgcATGTAATCATGtccaaaaagttttaataaaatttcCTTTTGATCCAGATATGTGCCTTTTTCTGGTTTGTTTGTCCATTTATTGTCCTGGCAGCCCAGATATGTCAGTTTATAATTAATTTAGtgtatattaaagttaatttagtGGGCGACAcggtcgcctcaaagcaagaaggtcgctggttcaagtcgcggcctggccagttggcatttctgtgtagagttagcatgttctcctcgtgttggcgtgggtttcctccgggtgctccggtttcccccacagtccaaacacatgcgctataagggaattgaTTAATATTGGTCGTAGTGTGTAAGTGAac
>TCONS_00005608
CAACAACGCAAGAACTCGCAGTTACATCAAGTTGTGCGGTTAAGTGCAATGTTAATTTAGTCACATGTCTATTGCAGAAGAAGTAAGAAGGGGTGGATCATAAATCCACGACCCCCCCCTCCTTCTTAAACCCACCCAAACTCCCCCCTCGAGTCTCCAAAAATCACTGCACTTTCCATTCGCCGTGGAGCTCCAGCAGAGGTGAAGTTcagctctcctcctcctcctcctcctccttcatcatGTGCACGGAATAACACGCATCCAGGCCTCGTGTTTCATTAGCAAACATGCCGAGGAAGGATTTGCTGGATGTGATTTCTAAAGAGGATCTCCGTTTGGCCATTTCACGTCCAGATGAGCGGAGCATtggCCTGCAGGAAGATGTGAAGGCAGCACTGCTCATCAGGCTGATGCAACATGAGGTCTGCAGAAGAATGGAAGAGAGAGGGGAATCATGGGAAGGATTTCAGAGcggtaaaatatgtaatatattgtaCATAAGTGAAATAAATATGTGTTATATATgtgtaatatttacagtatgcATGTAATCATGtccaaaaagttttaataaaatttcCTTTTGATCCAGATATGTGCCTTTTTCTGGTTTGTTTGTCCATTTATTGTCCTGGCAGCCCAGATATGTCAGTTTATAATTAATTTAGtgtatattaaagttaatttagtGGGCGACAcggtcgcctcaaagcaagaaggtcgctggttcaagtcgcggcctggccagttggcatttctgtgtagagttagcatgttctcctcgtgttggcgtgggtttcctccgggtgctccggtttcccccacagtccaaacacatgcgctataagggaattgaTTAATATTGGTCGTAGTGTGTAAGTGAac

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0021536 diencephalon development biological_process
GO:0048468 cell development biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:1990399 epithelium regeneration biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0030182 neuron differentiation biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0051254 positive regulation of RNA metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0043696 dedifferentiation biological_process
GO:0043697 cell dedifferentiation biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0061549 sympathetic ganglion development biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0021953 central nervous system neuron differentiation biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050793 regulation of developmental process biological_process
GO:0007399 nervous system development biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0060284 regulation of cell development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0060290 transdifferentiation biological_process
GO:0007420 brain development biological_process
GO:0030900 forebrain development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0022008 neurogenesis biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0048699 generation of neurons biological_process
GO:0003310 pancreatic A cell differentiation biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0021510 spinal cord development biological_process
GO:0060322 head development biological_process
GO:0021515 cell differentiation in spinal cord biological_process
GO:0021517 ventral spinal cord development biological_process
GO:0051960 regulation of nervous system development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0046983 protein dimerization activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006132 False 542 lncRNA 0.52 3 43453171 43540168
TCONS_00006134 False 693 lncRNA 0.44 2 43499529 43540044
TCONS_00005608 True 888 lncRNA 0.45 3 43499529 43540184

Neighbor

gene id symbol gene type direction distance location
XLOC_003061 edil3b coding downstream 49144 43355895 ~ 43404027 (-)
XLOC_003060 hapln1b coding downstream 118172 43269918 ~ 43334999 (-)
XLOC_003059 tmem167a coding downstream 335527 43110788 ~ 43117644 (-)
XLOC_003058 ssbp2 coding downstream 424170 42930353 ~ 43029001 (-)
XLOC_003056 ACOT12 coding downstream 529786 42903091 ~ 42923385 (-)
XLOC_003065 mef2ca coding upstream 4630 43544814 ~ 43655449 (-)
XLOC_003066 cetn3 coding upstream 165611 43705795 ~ 43759532 (-)
XLOC_003067 arrdc3b coding upstream 221296 43761480 ~ 43771447 (-)
XLOC_003068 CT583727.1 coding upstream 291698 43831882 ~ 43832668 (-)
XLOC_003069 tlr8b coding upstream 298379 43838563 ~ 43850304 (-)
XLOC_003057 CU326366.3 non-coding downstream 541124 42911933 ~ 42912047 (-)
XLOC_003053 FP236542.2 non-coding downstream 583022 42799115 ~ 42870149 (-)
XLOC_003048 NA non-coding downstream 979232 42470616 ~ 42473939 (-)
XLOC_003047 NA non-coding downstream 1098067 42313639 ~ 42355104 (-)
XLOC_003040 NA non-coding downstream 1466576 41982909 ~ 41986595 (-)
XLOC_003075 CABZ01085662.1 non-coding upstream 702052 44242236 ~ 44253104 (-)
XLOC_003076 CABZ01074708.1 non-coding upstream 728297 44268481 ~ 44275885 (-)
XLOC_003080 NA non-coding upstream 840734 44380918 ~ 44387802 (-)
XLOC_003084 CABZ01072084.1 non-coding upstream 953735 44493919 ~ 44501719 (-)

Expression


Co-expression Network