XLOC_003064 (dre-mir-9-2)


Basic Information

Item Value
gene id XLOC_003064
gene name dre-mir-9-2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 43535960 ~ 43536095 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005609
GCTCTCCTCTGGTGACTTTTGCACTTGGAGGCGTGTTGTTATCTTTGGTTATCTAGCTGTATGAGTGTGCTGGCCGTCATAAAGCTAGATAACCGAAAGTAAGAGCCGCTTCTATCAGCAACGTATGGAGCATTGC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000080612

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005609 True 136 miRNA 0.47 1 43535960 43536095

Neighbor

gene id symbol gene type direction distance location
XLOC_003063 NA coding downstream 39744 43484627 ~ 43496216 (-)
XLOC_003061 edil3b coding downstream 131933 43355895 ~ 43404027 (-)
XLOC_003060 hapln1b coding downstream 200961 43269918 ~ 43334999 (-)
XLOC_003059 tmem167a coding downstream 418316 43110788 ~ 43117644 (-)
XLOC_003058 ssbp2 coding downstream 506959 42930353 ~ 43029001 (-)
XLOC_003065 mef2ca coding upstream 8719 43544814 ~ 43655449 (-)
XLOC_003066 cetn3 coding upstream 169700 43705795 ~ 43759532 (-)
XLOC_003067 arrdc3b coding upstream 225385 43761480 ~ 43771447 (-)
XLOC_003068 CT583727.1 coding upstream 295787 43831882 ~ 43832668 (-)
XLOC_003069 tlr8b coding upstream 302468 43838563 ~ 43850304 (-)
XLOC_003057 CU326366.3 non-coding downstream 623913 42911933 ~ 42912047 (-)
XLOC_003053 FP236542.2 non-coding downstream 665811 42799115 ~ 42870149 (-)
XLOC_003048 NA non-coding downstream 1062021 42470616 ~ 42473939 (-)
XLOC_003047 NA non-coding downstream 1180856 42313639 ~ 42355104 (-)
XLOC_003075 CABZ01085662.1 non-coding upstream 706141 44242236 ~ 44253104 (-)
XLOC_003076 CABZ01074708.1 non-coding upstream 732386 44268481 ~ 44275885 (-)
XLOC_003080 NA non-coding upstream 844823 44380918 ~ 44387802 (-)
XLOC_003084 CABZ01072084.1 non-coding upstream 957824 44493919 ~ 44501719 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000158_01442232_01445146 NA coding CI01000158 null 1442187 ~ 1445826 (+)