XLOC_003066 (cetn3)


Basic Information

Item Value
gene id XLOC_003066
gene name cetn3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 43705795 ~ 43759532 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005614
AACGTTTCCCTGATAATCAACTAGCACCGCGCCGACGACTGTTTGCTGGCATTAGCCGATTAGCGGGACTGCTGAAGCCGATCTCTAATCTTGTTTGacgaattttaattaattagaatCAACACTTTTATTGTCGGACTGCAGAAATGAGTCTATCTCTCAGGACTGAGCTGACTGCTGATAAGAGTAAAAGGAAGAAAAGGAGAGAACTCACTGACGAGCAGAAGGATGAAATCAAGGAGGCCTTCGAGCTTTTCGACACAGACAAGGATAAAGAAATAGATTATCATGAATTAAAGGTGGCGATGAGAGCTTTGGGTTTTGAGGTGAAGAAAGTAGACGTGTTGAAGATCCTAAAAGACTACGACAGAGAAGGAACTGGCAAAATAAGCTTTGAAGATTTCAGAGAAGTGGTGACAGACATGATATTGGAACGAGACCCAAAAGAGGAAATCCTGAAGGCGTTTAAACTCTTCGATGATGATGAAACGGGGAAGATCAGCCTGAGGAACCTGCGTCGAGTCGCTCGTGAACTGGGGGAAGACATGAGCGATGAAGACCTGCGAGCCATGATTGATGAGTTCGACACTGATGGAGACGGAGAGATAAATCAAGATGAGTTTATTTCCATCATGACCGGAGACTCCTGAGCCGCTGCGACCCTAGCACACACACTGATCTCATTCACCAACAGTAAAACAGCATTTCAGATCATTTCAGGAACGGTAGGTGCTAAAATCTGGACTGATGCTTGAAGTGAACTGGACGTGAAGGACGAAAAACATTTCAGGTCATGATTCAGTTGGttagattgtgtttttttattgtgaaacTTTGTATTTTATCATTGCAAATGTGTCGCTTTGTCTTTAATATGAACGGTTTGTATTGTAGTTGTTCATGTTGCATTTGAAAAGCATTCCAAAGCactatttattgtaaatatacagtaaaaaaacaactatttttgCTTTGTCTTTTTTACTAAAGACGTTGTCACAATCATTTTGTCTTCAGGTGGTCTGTGCTAATATGCTCATAACTCAATGCTCAGTACATCTTTATTTTGCTATTACATTATAttgcattaatatttttattttgggatCACAAGAATATTAATGATCCAATTCTGCACTTATTTTTCGGCAATATTTGTTCGATAAAGCCCATTTTTACCAGTTCAAGGGACTTGCCGCAAAAGTAatgattaaattaacaaaataggATAAATAATTTGCAAATAATTTTTCCAAATATGTATTAAAGTTAATCTGGCAATTACAAAATTCTCACCTTGATTTGAAATATCTTTGGGGTATTTAAGTTGGGTTAATCCATTATTcactataatataatgtaaaatatattaaattatgtattaaatGATAATAAAGAATTAGGAATATAGTACATATAAATGATATATTTGcataatttatagtaaaatataataaatttagcaaaattaaccagattaaaattaataaactattaatattttatatatatatatgtattcattcattttcttttcagtgtagtccctttattaatctgaatgCCTAAtctaatgaaccgccaacttattcagaaaatgttttacacagctgatgcccttccagctgcaacccatcactgggaaacacccatacactgtcatttacacacatacactatggacaatagcTTACCCAATgcccctgtagcgcatgtgtttggactgtgggggaaaccggaacacgaggagaacatgcaaactccacacagaaatgccaactgacccagccaaggcttgaaccagtgaccttcttgctctgtgaggcaacagcgctaaccaATGTGTCACCCCgccacccatatatatatatatatatatgtatgtatgtatgtatgtatgtatgtatgtgtatatatatatatatatatatatatatatatatatgtatatatatatatatatatatatatatgtatatatatatatgggtcagTGACAAAACAGGTTTGGCAAGAtgggaaatttaaaaatcttttacaaagttgatttaaaagcatccgtcagatattttaaaatgtacagattgtattcatgttgattttatgtaattaaaaataacatttacaccaTTTTTTACAGACATTAAGACTGAAtgcaactgaaaatgtcaaatggtgtaactgccaaaaattgtgaaatattaaataatttactccTCCTAGATGATATGCAAgtgtacacactgaaataaatacttcattttaaaataccacaataacatttattgtattcgcattatctctaaatgtacattttaatgagtttttgCAATATTCGGCCAGACACATGCTAAAAACACTTCTGGTTTCTAAATaatctttgacaaattatgtaaaaaatgttaaaaactattttattacactaaactaagtgttttaattttaatttcacattatttccatgtacataattatatttttatgtaaaatactggTTACACCAATTGACAAAAACCAGTTACACCACCTGACAGTGTTGCTTCTACAGCCAAAGATTTTGAAATtgacaattaaaatcaattcaaattaaGAATGATAGTCAACAATTTCAGTGGGATTGTCATTGACAAATGTGTTTAGAACAATGAAACCAGGTTGCTGAACTTTAATACACCAAGTAATAACATCCTTTACATTAAATGTGTGGCCCTCATCAATAGAATATTAACAaactaaagaaacatgtttaacatttaacaccttttccatcactgtttcttttcagttggcttaattaaaattaaaataagtagatgatattagaaaaaaatccactattttaCTTTTAAGCTATTTAGAAACAATTTGCCAAACACTGTACGTAAATCACTAGTACgtaagaactgctgcttactcGTTGTTGCCTTGGTGCTGGGATTAAAGGCCAATTTTTGTAAGCATACACGACTGACTGACAACAAATAATTTCATGAGTGTATCCacaacttatccacaaactatttattttatacagttaacttcagaattatgcataattattattagtccccctgagctATTAGCTCCtctgttattttttccccaattttggtttaacagagagaagattttttcaacacattttcaacacataatagttttaataactcatctctaataactgatttattttctctttggcatgatgacagtaaataatattagactagatattcttcaagatacttctatacagcttaaagtagcatttaaaggcttaattaggttaactaggcaggttagagtaattagataagttattgtatatccatggtttgttctgtagactattgcggggaaaaagcttaaaagggccaataatttttacctcaaaatggcttttaaaaattgcttttattctagcctaaataaaacaaataagactttctccagaagaaaattttttatcagacatgctgtaaaaaaaaccaaacaaaactgatttcaactgcaattcatttgtttagcaacttctgacttgttcttcacaaCTTTTCATCATTAAAGTTCCTCCGAGTCACCTccagttgttaataataatagtacaacagCAAGCGCATCAAGTATGAAAACCTCCAAAACTTAAGGCTGTGTGCACTCAGTCTATAGAGGCTTGTCAACCTTGTTTCATTTCCcatgttaattttttcttttatttaaaaaagaaattcccaagtgctctttaacagagagaatattattgtcaacacatttctaaacaaaatagtttaaatgactaaattctaataactgatttcttccgtaatctttgccatgatgacagcacataatatttgactagataatttgtaagacattagtattcagcctaaagtgacatttaaaaatgtaattaggttaattaggcaagtaagatCTATTGGCCAAGTCATTGggtaactgtggtttgttctgtatttaagaaggctaacaatattgaccttaaaaactgcttaaacattttaaaaactgcttttattctatccaaactaaaagaaataagactttctcaa
>TCONS_00005615
TTCAGGACTGAGCTGACTGCTGATAAGAGTAAAAGGAAGAAAAGGAGAGAACTCACTGACGAGCAGAAGGATGAAATCAAGGAGGCCTTCGAGCTTTTCGACACAGACAAGGATAAAGAAATAGATTATCATGAATTAAAGGTGGCGATGAGAGCTTTGGGTTTTGAGGTGAAGAAAGTAGACGTGTTGAAGATCCTAAAAGACTACGACAGAGAAGGAACTGGCAAAATAAGCTTTGAAGATTTCAGAGAAGTGGTGACAGACATGATATTGGAACGAGACCCAAAAGAGGAAATCCTGAAGGCGTTTAAACTCTTCGATGATGATGAAACGGGGAAGATCAGCCTGAGGAACCTGCGTCGAGTCGCTCGTGAACTGGGGGAAGACATGAGCGATGAAGACCTGCGAGCCATGATTGATGAGTTCGACACTGATGGAGACGGAGAGATAAATCAAGATGAGTTTATTTCCATCATGACCGGAGACTCCTGAGCCGCTGCGACCCTAGCACA
>TCONS_00005616
GTCTTTTCCTCTCCGTCCTCTTTGCATTCCTGCAGACGGGCCGTTTAAGGACCACGAACACAAGGAGCCGCTTGTTTCTGCACACCAGAGACGCTTCAGATTTTCCACTCCTCTTCCCAGACTCAAGCGCAGCAGATGTTCGCTCCCAAGAGCTAGATTGTCTGATGATCTCCAGGTCTGAATCTGTGGACACAAAACATCTGCTTCTCCTTCTTTCTCAGCGAGAGAAAACAAGCGAGACGCTGTGCGAGCGCATGTGTGTCTTTAACCTCCTGCCACAAGAACAACATCCCCACATGACGGTCAGCGGCACGGCCCTGCGGGGCTCTGCATGAATACAGCTTCTGAATGAGCTTTTATTTGTCCTCACACAGCATTGCTTCTTACACAAAGACCTTAAGACAGAAAACCACCCACAGTTCTGCATCACCTGCACATGTTGTGCTCTTCATCCAATCAGAATACAGCAACACAGAGGGGGCGTGGCTAGAACATCACACCACCACTGAGATGAAAGAACAGGACTGAGCTGACTGCTGATAAGAGTAAAAGGAAGAAAAGGAGAGAACTCACTGACGAGCAGAAGGATGAAATCAAGGAGGCCTTCGAGCTTTTCGACACAGACAAGGATAAAGAAATAGATTATCATGAATTAAAGGTGAATCCCTCTTT
>TCONS_00005617
ACGAACACAAGGAGCCGCTTGTTTCTGCACACCAGAGACGCTTCAGATTTTCCACTCCTCTTCCCAGACTCAAGCGCAGCAGATGTTCGCTCCCAAGAGCTgtgtgtgtgtgaagctgcAGTCGTCCCGCGTGGCTGACAGCACGTAACACCTGCGAGATTGTCTGATGATCTCCAGGTCTGAATCTGTGGACACAAAACATCTGCTTCTCCTTCTTTCTCAGCGAGAGAAAACAAGCGAGACGCTGTGCGAGCGCATGTGTGTCTTTAACCTCCTGCCACAAGAACAACATCCCCACATGACGGTCAGCGGCACGGCCCTGCGGGGCTCTGCATGAATACAGCTTCTGAATGAGCTTTTATTTGTCCTCACACAGCATTGCTTCTTACACAAAGACCTTAAGACAGAAAACCACCCACAGTTCTGCATCACCTGCACATGTTGTGCTCTTCATCCAATCAGAATACAGCAACACAGAGGGGGCGTGGCTAGAACATCACACCACCACTGAGATGAAAGAACAGGTATTTGGGGGAG

Function

symbol description
cetn3 Predicted to enable calcium ion binding activity and microtubule binding activity. Predicted to be active in microtubule organizing center. Orthologous to human CETN3 (centrin 3).

GO:

id name namespace
GO:0005815 microtubule organizing center cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
ko03019 Messenger RNA biogenesis
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-050522-152 Predicted to enable calcium ion binding activity and microtubule binding activity. Predicted to be active in microtubule organizing center. Orthologous to human CETN3 (centrin 3).

Ensembl:

ensembl_id ENSDARG00000011825

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005614 False 4073 mRNA 0.32 5 43705795 43721530
TCONS_00005615 False 512 mRNA 0.46 4 43709198 43718914
TCONS_00005616 False 672 processed_transcript 0.48 3 43718760 43759532
TCONS_00005617 True 537 processed_transcript 0.51 3 43735286 43759479

Neighbor

gene id symbol gene type direction distance location
XLOC_003065 mef2ca coding downstream 50346 43544814 ~ 43655449 (-)
XLOC_003062 NA coding downstream 165611 43453171 ~ 43540184 (-)
XLOC_003064 dre-mir-9-2 coding downstream 169700 43535960 ~ 43536095 (-)
XLOC_003063 NA coding downstream 209579 43484627 ~ 43496216 (-)
XLOC_003061 edil3b coding downstream 301768 43355895 ~ 43404027 (-)
XLOC_003067 arrdc3b coding upstream 1948 43761480 ~ 43771447 (-)
XLOC_003068 CT583727.1 coding upstream 72350 43831882 ~ 43832668 (-)
XLOC_003069 tlr8b coding upstream 79031 43838563 ~ 43850304 (-)
XLOC_003070 mctp1b coding upstream 103432 43862964 ~ 43928937 (-)
XLOC_003071 sept5b coding upstream 176720 43936252 ~ 43964028 (-)
XLOC_003057 CU326366.3 non-coding downstream 793748 42911933 ~ 42912047 (-)
XLOC_003053 FP236542.2 non-coding downstream 835646 42799115 ~ 42870149 (-)
XLOC_003075 CABZ01085662.1 non-coding upstream 482704 44242236 ~ 44253104 (-)
XLOC_003076 CABZ01074708.1 non-coding upstream 508949 44268481 ~ 44275885 (-)
XLOC_003080 NA non-coding upstream 621386 44380918 ~ 44387802 (-)
XLOC_003084 CABZ01072084.1 non-coding upstream 734387 44493919 ~ 44501719 (-)

Expression


Co-expression Network