G1163517 (LOC106612151)


Basic Information

Item Value
gene id G1163517
gene name LOC106612151
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 30485412 ~ 30486217 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1326887
TTCCATACCTTTGTGGCTAATAGGGTTGCTATGATCTGTGACCTATCGAAAGCAAAACAGTGGAGGTATTTGAACTCCAAACACAACCCAGCCGACGATGCCTCAAGAGGATTACATGTTGAAATTTTCCTGAACTCAAAGAGATGGCGCAAAGAACCAGAATTCCAGGAGAACCAGAAACTCAATGGCTGAAAGTCCCCGAGGAGCTTGGCTCCATCGCTCCGGATGATCCAGAGTTGAGAAGACGTAAATGTAAACAGTACAAGTGTGGAAGAAAGGAGTTCAACCAGAAcaaaacggcaagcaatgcaggtgtagaagtacggtggctaggaaaaattccctagaaaggccagaacctaggatgaaacctagagatgtttaaatgttcatagatgaccagcagggtcaaataataatcacagtggttgtcaagggtgcaacgggtcagcacctcaggagtaaatgtcagttggcttttcatagccgatcattcagagtatctctaccgctcctgctgtctctagagagttgaaaacagcaggtctgggacaggccagcacgtccggtgaacaggtcaggggtccatagccgcaggcagaacagttgaaactggagcagcacggccaggtggactggggacagcaaggagtcatcaggccaggtagtcctgaggcatggtcctagggctcaggtcctccgagagagagagaaagaaaaaaatagaATTAAatgcacacaggacaccgggtaagacagaaatactccagatataacagactgaccctagccccccgacacaaact

Function

NR:

description
PREDICTED: uncharacterized protein LOC106612151

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1326887 True 806 lncRNA 0.48 1 30485412 30486217

Neighbor

gene id symbol gene type direction distance location
LOC110486082 LOC106584819 coding upstream 202367 30264043 ~ 30283045 (+)
LOC110486081 LOC106584808 coding upstream 246166 30177711 ~ 30239246 (+)
LOC110486080 LOC106584788 coding upstream 343002 30130837 ~ 30142410 (+)
LOC110486079 LOC106564790 coding upstream 363328 30040273 ~ 30122084 (+)
LOC110485133 LOC106608247 coding upstream 447239 29938250 ~ 30038173 (+)
LOC118938065 LOC106564780 coding downstream 37715 30523932 ~ 30552653 (+)
LOC110486087 LOC106584892 coding downstream 93701 30579918 ~ 30598703 (+)
LOC110486099 NA coding downstream 364363 30850580 ~ 30852604 (+)
LOC110485141 LOC106600922 coding downstream 418581 30904798 ~ 30962319 (+)
LOC110486104 chchd5 coding downstream 627564 31113781 ~ 31119681 (+)
G1163350 NA non-coding upstream 5460 30419282 ~ 30479952 (+)
G1163334 NA non-coding upstream 92228 30391264 ~ 30393184 (+)
G1163333 LOC106613263 non-coding upstream 94797 30390387 ~ 30390615 (+)
G1163292 NA non-coding upstream 170808 30314257 ~ 30314604 (+)
G1163282 NA non-coding upstream 192557 30292604 ~ 30292855 (+)
G1163541 NA non-coding downstream 20881 30507098 ~ 30507397 (+)
G1163549 NA non-coding downstream 25335 30511552 ~ 30511890 (+)
G1163552 NA non-coding downstream 26898 30513115 ~ 30513609 (+)
G1163559 NA non-coding downstream 32595 30518812 ~ 30519117 (+)
G1163565 NA non-coding downstream 35574 30521791 ~ 30521998 (+)
G1162753 NA other upstream 654116 29830754 ~ 29831296 (+)
G1162364 NA other upstream 990510 29494362 ~ 29494902 (+)
si:ch211-126j24.1 LOC106585260 other upstream 1114465 29266618 ~ 29370947 (+)
G1161908 NA other upstream 1185756 29298758 ~ 29299656 (+)
G1159924 NA other upstream 1665964 28818734 ~ 28819448 (+)
LOC110486134 LOC106600876 other downstream 1515534 32001741 ~ 32159164 (+)
ifn2 ifn2 other downstream 2229039 32714937 ~ 32722676 (+)
LOC110486146 LOC106607468 other downstream 2742896 33001356 ~ 33230495 (+)
G1166318 NA other downstream 2753736 33239953 ~ 33249208 (+)

Expression


Co-expression Network