G1166783


Basic Information

Item Value
gene id G1166783
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 33692480 ~ 33693352 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1330571
AAGGAAGCCCGTTCTGTCTGAAGTCCACTTTCGGTCAGTTTAAGAGGTATTCAAGCCCGATATTTGACGTTGTGAAGAAAGATACAACTAGCGCTTACATTTTGATCGTCAATATTTCATCATTGCAATCTTGCGATCTGGCAAAATGTTGCTAATTGTACATTGTCAAGGCacagtttagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagcgagagcgagagggagtgagtgtgtgtgtgtccacaagaatagtaaacaaacaaaaatttgaccaactggggacattttgttggtccccacaagcTCAAATGCTGGGTTAaagttagatttagggttaggattaggagctagatttagttttagggttagggttaggagctagggttagagtaagggttaaggttagggttagggttacggtaaTGGTACGGTTAgcgttaggtgaagggttagggattacaggattttgaatgggactgaattgtgtatccccacaaggttagttgtacaaggctgtgtgtgtgcgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgcaataACCTCACCTGTATATATGTAGAGCTCTGGAGACGACCTTCCTCCCAAAGCTTAATAGTTTATGGGAGAAACCCTGCTTGGAAAGCCAAATATATCGACTCAAATATCAGATCATTGCCACTCCAATATCCACTCCAGAATCCTCTTCCACTCTTATCCTTTTACTGCTGTCCTTCCCTTCGTCTTCTTCGTCCTCCCCTGTACagcctattctctctctctctgtctctctctctctgtctctctctgatagTCAGGTGTAGAGCTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1330571 True 853 lncRNA 0.44 2 33692480 33693352

Neighbor

gene id symbol gene type direction distance location
LOC110486158 LOC106607478 coding upstream 38645 33637809 ~ 33653835 (+)
csf-3 csf-3 coding upstream 352753 33335447 ~ 33339727 (+)
LOC110486150 psd3 coding upstream 365446 33320635 ~ 33327034 (+)
LOC110485152 LOC106607471 coding upstream 390054 33296758 ~ 33304976 (+)
LOC110486148 LOC106607470 coding upstream 407673 33271079 ~ 33284807 (+)
LOC110486161 LOC106607482 coding downstream 77087 33770439 ~ 33783009 (+)
LOC110485153 LOC106607489 coding downstream 525493 34218845 ~ 34221786 (+)
LOC110486176 LOC106607492 coding downstream 572032 34265384 ~ 34272808 (+)
LOC110486177 LOC106607493 coding downstream 583884 34277236 ~ 34292574 (+)
LOC110486178 LOC106607494 coding downstream 616102 34309454 ~ 34366289 (+)
G1166755 NA non-coding upstream 47853 33644424 ~ 33644627 (+)
G1166735 NA non-coding upstream 84901 33607354 ~ 33607579 (+)
G1166690 NA non-coding upstream 146950 33543113 ~ 33545530 (+)
G1166591 NA non-coding upstream 232997 33421300 ~ 33459483 (+)
G1166590 LOC100286406 non-coding upstream 260138 33423972 ~ 33432342 (+)
G1166778 NA non-coding downstream 13461 33706813 ~ 33808708 (+)
G1166802 NA non-coding downstream 30998 33724350 ~ 33724775 (+)
G1166809 NA non-coding downstream 40001 33733353 ~ 33733843 (+)
G1167108 NA non-coding downstream 139837 33833189 ~ 33833393 (+)
G1167110 NA non-coding downstream 140711 33834063 ~ 33834294 (+)
G1166318 NA other upstream 443272 33239953 ~ 33249208 (+)
LOC110486146 LOC106607468 other upstream 461997 33001356 ~ 33230495 (+)
ifn2 ifn2 other upstream 970018 32714937 ~ 32722676 (+)
LOC110486134 LOC106600876 other upstream 1581747 32001741 ~ 32159164 (+)
LOC110486104 chchd5 other upstream 2572803 31113781 ~ 31119681 (+)
G1166779 NA other downstream 97288 33790640 ~ 33803665 (+)
LOC110486188 LOC107665142 other downstream 987836 34680909 ~ 34687670 (+)
G1169121 LOC106607257 other downstream 2296504 35989856 ~ 35992600 (+)
G1169207 NA other downstream 2474276 36167628 ~ 36168331 (+)
G1169208 NA other downstream 2476544 36169896 ~ 36171571 (+)

Expression


Co-expression Network