G1167397 (hoxb3aa)


Basic Information

Item Value
gene id G1167397
gene name hoxb3aa
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 34091287 ~ 34093735 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1331243
gcgcgcgtgagCGCGTGCGTGCGTTTtgcctgaaagagagagagggtatagagccAGCGAGGGAGCAATAGAGTTTGTGCACGTGTCTACTATACTGATGAATACCTCTGCGTTTTTTAGCAACTTTAAAAGTATGGCCCCCCTTTTGTCTCAGAAAACTTGAAATGACCACATAGAACTGAATAACATAACATTTTATTAAAGAATTGTTCAACAGACAACTCTTAACAATGAAATAAAAGGAGCTACAAAGGACAAAGGAAGTTCTCCAAAAGTGTTTAGCTATATTTCGTCTAATTCTCGACTATGCAGGAACGGTCTGATTCCGTCCTCGCTGACCCATGTACAAGTCAAGACATTATTTACGTACAAGGGTAACATAAACGATTTATTTCTAAAATACAATAACTAAAATGTATTCGTTACAATGACAAGAACACAACGTCTTTATAACAGGTAAATACtaaaaaattacattttttctTGATATAAATACATGGGGGATAAATAATACAAAAAGAAAGTATTTAAACTGGCtataacaaataaatatatatttatgaaTGTTCACTTGAACATACATTGAGAAAGACGCTGATTGGAGGTCTTCCGTTTCCAAAATAAGATGTATTTTTCCCTTAACCATCAAAATGTAAACTCTAAGTGCAACAATGATGCCCAGACGAGAAAGCATTAGTGTAAACCTACACTTCAGCTTGGTTCCTGGACATGCATTTTGTTCAAATATACCCTGTTTCCACGTTAAGTCAAGACATGAGAAATTGTGAGCCTTTCGCATTAGTCTTGGCTAATGTAAGTGAACCCTATAGATTGAacgagagagtgatagagagttGGAAGAGTGAGAGTAGGGAGTGATAGAGAAAACGGAGAGAGAgtggtgaggggggagagaaaggatgGGGCAATGAGCGTATCATAGTTGTCAAAAGAGTTCTCAACTCCTTTTTACCCTGTGATGATGATATAACAGCATAACAAATATACATTTTATGTCCtcgcgtgtgtgtttgtgattgttTATGGACGTtagctagcatagcatagcatagcaatGTGAACCCAAACACCATAAACCCAGTGGGCCTACGATGCATCTGCGTGATGCTAAAGGAGCTCTTCCCTTGAAGCCACAATGTTTGGCGaggacatgtaaaaaaaaaaaaaatgtcactgCACAGTGGGTTAGTGAGACATTTCCAAAGAGAGGTAATATGAATAAGGGAAGTAATCGAAAACAATCCAGTGGTTTGCTTGCACCAATTGAAAAATGCATATTGACGTCAGTCAAGCTTAACCATTTGTGCTGACTGCAAGGACGCAGGCTAAACATAAATCCACGTTGACGTAACATGTGTTTCACCGAGTCAAAAAGGTCTGACagtaataccccccccccccccccccacaccttgTTAGCTGTCCATTAAGCCCAACTATTACTATTTAATTACTTGTTTTCGAGGGAGAGCTCCATATTCAAGGAAATAAACCGCTAATCAAAACGCAATTCAAGTGAATGTTACTAATACGCACAATGATAAAGACAACAGACAATACTTTTTTGGCCATGGCAAGAAACCACTGGATCATATTTTTGTTCAACCCCATTGCAGCGTCCCATGGGTTAGTTATTTGTAGTTGTAATTTTAGTTTTTTCCCCCAAACCTGCTACTACAGATGAGTTAACTTGGGAGCTTCCTGGATTCTACCCTGAGAAGGATGGTGGGCTGCCAGCTCTGTGTATGTCGGGTGGGGGTCGCACGGTCCGTGGTGTTGGCTTGCTGACATCTGCGTGGCACCGTTGTAGTCCATGTTCCCAGCCTGGTGGTGTGGTAGATGATTGAGGCCGTACATGGACGGCCCAGAGGTGGGCATCGACTCCACGTAGTTTCCTCCCACATACACGGGGCTGCCCTGCATGTTGGGAGTTCCATAGTTGCCACTGTTACCCTGTAGCCCGTGCGGGTCGTATTCTGGTGCTGTGTTGGCATACTTCTGTTGGGAGGGGCAGCTTTTCATGGGGTTTTGGTAGGCTGAGGACATGGCATAGGCGTTTTGATGGGACTTGTTAAAAGATGGCGGGGAGGGGGCGTCGTAGTTGCCTGCCATGGAATGCATGGAGTTCATGAAGCCAGCTGAGGACTGCATGGGTAGGGGTGGGCTTCCGGTTGGAGAGGGGCCCCCTGATGAAGAGCCCAGCCCTTTACATTTCTGATCCTTTTTGTACTTCATACGCCGGTTCTGGAACCAAATCTTGATCTGGCGCTCGCTGAGGTTGAGCAAGTTGGCCATTTCCACGCGGCGAGGCCTACACAGGTAACGGTTGAAATGGAACTCCTTTTCTAGCTCCACCAGCTGCGCGCTCGTGTACGCGGTGCGCGCTCTCTTTGAGGCTGCGGAACCCGGGGGGCTTTTTTCACCTCCG
>TU1331242
TCTCCAAAAGTGTTTAGCTATATTTCGTCTAATTCTCGACTATGCAGGAACGGTCTGATTCCGTCCTCGCTGACCCATGTACAAGTCAAGACATTATTTACGTACAAGGGTAACATAAACGATTTATTTCTAAAATACAATAACTAAAATGTATTCGTTACAATGACAAGAACACAACGTCTTTATAACAGGTAAATACtaaaaaattacattttttctTGATATAAATACATGGGGGATAAATAATACAAAAAGAAAGTATTTAAACTGGCtataacaaataaatatatatttatgaaTGTTCACTTGAACATACATTGAGAAAGACGCTGATTGGAGGTCTTCCGTTTCCAAAATAAGATGTATTTTTCCCTTAACCATCAAAATGTAAACTCTAAGTGCAACAATGATGCCCAGACGAGAAAGCATTAGTGTAAACCTACACTTCAGCTTGGTTCCTGGACATGCATTTTGTTCAAATATACCCTGTTTCCACGTTAAGTCAAGACATGAGAAATTGTGAGCCTTTCGCATTAGTCTTGGCTAATGTAAGTGAACCCTATAGATTGAacgagagagtgatagagagttGGAAGAGTGAGAGTAGGGAGTGATAGAGAAAACGGAGAGAGAgtggtgaggggggagagaaaggatgGGGCAATGAGCGTATCATAGTTGTCAAAAGAGTTCTCAACTCCTTTTTACCCTGTGATGATGATATAACAGCATAACAAATATACATTTTATGTCCtcgcgtgtgtgtttgtgattgttTATGGACGTtagctagcatagcatagcatagcaatGTGAACCCAAACACCATAAACCCAGTGGGCCTACGATGCATCTGCGTGATGCTAAAGGAGCTCTTCCCTTGAAGCCACAATGTTTGGCGaggacatgtaaaaaaaaaaaaaatgtcactgCACAGTGGGTTAGTGAGACATTTCCAAAGAGAGGTAATATGAATAAGGGAAGTAATCGAAAACAATCCAGTGGTTTGCTTGCACCAATTGAAAAATGCATATTGACGTCAGTCAAGCTTAACCATTTGTGCTGACTGCAAGGACGCAGGCTAAACATAAATCCACGTTGACGTAACATGTGTTTCACCGAGTCAAAAAGGTCTGACagtaataccccccccccccccccccacaccttgTTAGCTGTCCATTAAGCCCAACTATTACTATTTAATTACTTGTTTTCGAGGGAGAGCTCCATATTCAAGGAAATAAACCGCTAATCAAAACGCAATTCAAGTGAATGTTACTAATACGCACAATGATAAAGACAACAGACAATACTTTTTTGGCCATGGCAAGAAACCACTGGATCATATTTTTGTTCAACCCCATTGCAGCGTCCCATGGGTTAGTTATTTGTAGTTGTAATTTTAGTTTTTTCCCCCAAACCTGCTACTACAGATGAGTTAACTTGGGAGCTTCCTGGATTCTACCCTGAGAAGGATGGTGGGCTGCCAGCTCTGTGTATGTCGGGTGGGGGTCGCACGGTCCGTGGTGTTGGCTTGCTGACATCTGCGTGGCACCGTTGTAGTCCATGTTCCCAGCCTGGTGGTGTGGTAGATGATTGAGGCCGTACATGGACGGCCCAGAGGTGGGCATCGACTCCACGTAGTTTCCTCCCACATACACGGGGCTGCCCTGCATGTTGGGAGTTCCATAGTTGCCACTGTTACCCTGTAGCCCGTGCGGGTCGTATTCTGGTGCTGTGTTGGCATACTTCTGTTGGGAGGGGCAGCTTTTCATGGGGTTTTGGTAGGCTGAGGACATGGCATAGGCGTTTTGATGGGACTTGTTAAAAGATGGCGGGGAGGGGGCGTCGTAGTTGCCTGCCATGGAATGCATGGAGTTCATGAAGCCAGCTGAGGACTGCATGGGTAGGGGTGGGCTTCCGGTTGGAGAGGGGCCCCCTGATGAAGAGCCCAGCCCTTTACATTTCTGATCCTTTTTGTACTTCATACGCCGGTTCTGGAACCAAATCTTGATCTGGCGCTCGCTGAGGTTGAGCAAGTTGGCCATTTCCACGCGGCGAGGCCTACACAGGTAACGGTTGAAATGGAACTCCTTTTCTAGCTCCACCAGCTGCGCGCTCGTGTACGCGGTGCGCGCTCTCTTTGAGGCTGCGGAACCCGGGGGGCTTTTTTCACCTCCG
>TU1331241
acaaataaatatatatttatgaaTGTTCACTTGAACATACATTGAGAAAGACGCTGATTGGAGGTCTTCCGTTTCCAAAATAAGATGTATTTTTCCCTTAACCATCAAAATGTAAACTCTAAGTGCAACAATGATGCCCAGACGAGAAAGCATTAGTGTAAACCTACACTTCAGCTTGGTTCCTGGACATGCATTTTGTTCAAATATACCCTGTTTCCACGTTAAGTCAAGACATGAGAAATTGTGAGCCTTTCGCATTAGTCTTGGCTAATGTAAGTGAACCCTATAGATTGAacgagagagtgatagagagttGGAAGAGTGAGAGTAGGGAGTGATAGAGAAAACGGAGAGAGAgtggtgaggggggagagaaaggatgGGGCAATGAGCGTATCATAGTTGTCAAAAGAGTTCTCAACTCCTTTTTACCCTGTGATGATGATATAACAGCATAACAAATATACATTTTATGTCCtcgcgtgtgtgtttgtgattgttTATGGACGTtagctagcatagcatagcatagcaatGTGAACCCAAACACCATAAACCCAGTGGGCCTACGATGCATCTGCGTGATGCTAAAGGAGCTCTTCCCTTGAAGCCACAATGTTTGGCGaggacatgtaaaaaaaaaaaaaatgtcactgCACAGTGGGTTAGTGAGACATTTCCAAAGAGAGGTAATATGAATAAGGGAAGTAATCGAAAACAATCCAGTGGTTTGCTTGCACCAATTGAAAAATGCATATTGACGTCAGTCAAGCTTAACCATTTGTGCTGACTGCAAGGACGCAGGCTAAACATAAATCCACGTTGACGTAACATGTGTTTCACCGAGTCAAAAAGGTCTGACagtaataccccccccccccccccccacaccttgTTAGCTGTCCATTAAGCCCAACTATTACTATTTAATTACTTGTTTTCGAGGGAGAGCTCCATATTCAAGGAAATAAACCGCTAATCAAAACGCAATTCAAGTGAATGTTACTAATACGCACAATGATAAAGACAACAGACAATACTTTTTTGGCCATGGCAAGAAACCACTGGATCATATTTTTGTTCAACCCCATTGCAGCGTCCCATGGGTTAGTTATTTGTAGTTGTAATTTTAGTTTTTTCCCCCAAACCTGCTACTACAGATGAGTTAACTTGGGAGCTTCCTGGATTCTACCCTGAGAAGGATGGTGGGCTGCCAGCTCTGTGTATGTCGGGTGGGGGTCGCACGGTCCGTGGTGTTGGCTTGCTGACATCTGCGTGGCACCGTTGTAGTCCATGTTCCCAGCCTGGTGGTGTGGTAGATGATTGAGGCCGTACATGGACGGCCCAGAGGTGGGCATCGACTCCACGTAGTTTCCTCCCACATACACGGGGCTGCCCTGCATGTTGGGAGTTCCATAGTTGCCACTGTTACCCTGTAGCCCGTGCGGGTCGTATTCTGGTGCTGTGTTGGCATACTTCTGTTGGGAGGGGCAGCTTTTCATGGGGTTTTGGTAGGCTGAGGACATGGCATAGGCGTTTTGATGGGACTTGTTAAAAGATGGCGGGGAGGGGGCGTCGTAGTTGCCTGCCATGGAATGCATGGAGTTCATGAAGCCAGCTGAGGACTGCATGGGTAGGGGTGGGCTTCCGGTTGGAGAGGGGCCCCCTGATGAAGAGCCCAGCCCTTTACATTTCTGATCCTTTTTGTACTTCATACGCCGGTTCTGGAACCAAATCTTGATCTGGCGCTCGCTGAGGTTGAGCAAGTTGGCCATTTCCACGCGGCGAGGCCTACACAGGTAACGGTTGAAATGGAACTCCTTTTCTAGCTCCACCAGCTGCGCGCTCGTGTACGCGGTGCGCGCTCTCTTTGAGGCTGCGGAACCCGGGGGGCTTTTTTCACCTCCG

Function

NR:

description
homeobox protein HoxB3aa2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1331243 False 2449 lncRNA 0.44 1 34091287 34093735
TU1331242 False 2184 lncRNA 0.45 1 34091552 34093735
TU1331241 True 1908 lncRNA 0.47 1 34091828 34093735

Neighbor

gene id symbol gene type direction distance location
LOC110486161 LOC106607482 coding upstream 308278 33770439 ~ 33783009 (+)
LOC110486158 LOC106607478 coding upstream 437452 33637809 ~ 33653835 (+)
csf-3 csf-3 coding upstream 751560 33335447 ~ 33339727 (+)
LOC110486150 psd3 coding upstream 764253 33320635 ~ 33327034 (+)
LOC110485152 LOC106607471 coding upstream 788861 33296758 ~ 33304976 (+)
LOC110485153 LOC106607489 coding downstream 125110 34218845 ~ 34221786 (+)
LOC110486176 LOC106607492 coding downstream 171649 34265384 ~ 34272808 (+)
LOC110486177 LOC106607493 coding downstream 183501 34277236 ~ 34292574 (+)
LOC110486178 LOC106607494 coding downstream 215719 34309454 ~ 34366289 (+)
LOC110486179 LOC106607495 coding downstream 273562 34367297 ~ 34372229 (+)
G1167396 NA non-coding upstream 294 34090784 ~ 34090993 (+)
G1167394 NA non-coding upstream 1977 34088949 ~ 34089310 (+)
G1167373 NA non-coding upstream 23521 34067523 ~ 34067766 (+)
G1167363 NA non-coding upstream 29452 34061608 ~ 34061835 (+)
G1167355 NA non-coding upstream 35893 34054645 ~ 34055394 (+)
G1167398 hoxb3ab non-coding downstream 757 34094492 ~ 34095088 (+)
G1167399 NA non-coding downstream 2143 34095878 ~ 34096173 (+)
G1167405 NA non-coding downstream 13215 34106950 ~ 34107160 (+)
G1167410 NA non-coding downstream 23564 34117299 ~ 34117777 (+)
G1167411 NA non-coding downstream 25107 34118842 ~ 34119528 (+)
G1166779 NA other upstream 287622 33790640 ~ 33803665 (+)
G1166318 NA other upstream 842079 33239953 ~ 33249208 (+)
LOC110486146 LOC106607468 other upstream 860804 33001356 ~ 33230495 (+)
ifn2 ifn2 other upstream 1368825 32714937 ~ 32722676 (+)
LOC110486134 LOC106600876 other upstream 1980554 32001741 ~ 32159164 (+)
LOC110486188 LOC107665142 other downstream 587453 34680909 ~ 34687670 (+)
G1169121 LOC106607257 other downstream 1896121 35989856 ~ 35992600 (+)
G1169207 NA other downstream 2073893 36167628 ~ 36168331 (+)
G1169208 NA other downstream 2076161 36169896 ~ 36171571 (+)
LOC110486232 rprml other downstream 2244358 36338066 ~ 36339755 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00016665 LOC105013251 coding CM030122.1 CM030122.1 27217458 ~ 27219724 (-)