G1167410


Basic Information

Item Value
gene id G1167410
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 34117299 ~ 34117777 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1331259
GCATATTGTATGTGATGTCACACGGAAATTCATTTATTTGACTATGCAAGTGCTTGGGGGCTTTTTTGTGAAGACACATATGCGTGGGGACCAATGTATCTATTCAAATAAACGACGTTTGAACTGTTGTGAATATCACAACATTTGGACATAATATCACTTGCCATCTGAAAAGTATAGACACTGCCTAAGGGCCCAATGTGTGTGAGCTATAGACTTAAAAAAGGAGCACATCCAAGAATACTGTGAACGAATTCGATAGTAGGCCTATCACATTGTATGTATTTCaatggtactgtgtgtgtatatttgactGGACTTGCTTCAATGTCTTGAGGCATAGCATAGGCCTGTAGGAAGCTAGAGGTTTTGAAAAGGCATTTCATAAATATATGGTGAGAAAAAATCATATAAATGGATTGGAGGAGGCTATATGGCACAAGGGCTTACATCAACCAACAAGTAATAGAAAATCTTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1331259 True 479 lncRNA 0.38 1 34117299 34117777

Neighbor

gene id symbol gene type direction distance location
LOC110486161 LOC106607482 coding upstream 334290 33770439 ~ 33783009 (+)
LOC110486158 LOC106607478 coding upstream 463464 33637809 ~ 33653835 (+)
csf-3 csf-3 coding upstream 777572 33335447 ~ 33339727 (+)
LOC110486150 psd3 coding upstream 790265 33320635 ~ 33327034 (+)
LOC110485152 LOC106607471 coding upstream 814873 33296758 ~ 33304976 (+)
LOC110485153 LOC106607489 coding downstream 101068 34218845 ~ 34221786 (+)
LOC110486176 LOC106607492 coding downstream 147607 34265384 ~ 34272808 (+)
LOC110486177 LOC106607493 coding downstream 159459 34277236 ~ 34292574 (+)
LOC110486178 LOC106607494 coding downstream 191677 34309454 ~ 34366289 (+)
LOC110486179 LOC106607495 coding downstream 249520 34367297 ~ 34372229 (+)
G1167405 NA non-coding upstream 10139 34106950 ~ 34107160 (+)
G1167399 NA non-coding upstream 21126 34095878 ~ 34096173 (+)
G1167398 hoxb3ab non-coding upstream 22211 34094492 ~ 34095088 (+)
G1167397 hoxb3aa non-coding upstream 23564 34091287 ~ 34093735 (+)
G1167396 NA non-coding upstream 26306 34090784 ~ 34090993 (+)
G1167411 NA non-coding downstream 1065 34118842 ~ 34119528 (+)
G1167412 hoxb4aa non-coding downstream 2078 34119855 ~ 34120276 (+)
G1167413 NA non-coding downstream 5916 34123693 ~ 34124060 (+)
G1167418 NA non-coding downstream 11996 34129773 ~ 34129982 (+)
G1167419 NA non-coding downstream 12963 34130740 ~ 34130999 (+)
G1166779 NA other upstream 313634 33790640 ~ 33803665 (+)
G1166318 NA other upstream 868091 33239953 ~ 33249208 (+)
LOC110486146 LOC106607468 other upstream 886816 33001356 ~ 33230495 (+)
ifn2 ifn2 other upstream 1394837 32714937 ~ 32722676 (+)
LOC110486134 LOC106600876 other upstream 2006566 32001741 ~ 32159164 (+)
LOC110486188 LOC107665142 other downstream 563411 34680909 ~ 34687670 (+)
G1169121 LOC106607257 other downstream 1872079 35989856 ~ 35992600 (+)
G1169207 NA other downstream 2049851 36167628 ~ 36168331 (+)
G1169208 NA other downstream 2052119 36169896 ~ 36171571 (+)
LOC110486232 rprml other downstream 2220316 36338066 ~ 36339755 (+)

Expression


Co-expression Network