Gene
RNA
| Item | Value |
|---|---|
| gene id | G1167411 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048577.1 |
| NCBI id | CM023231.2 |
| chromosome length | 73332040 |
| location | 34118842 ~ 34119528 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1331262 | False | 687 | lncRNA | 0.36 | 1 | 34118842 | 34119528 |
| TU1331264 | True | 356 | lncRNA | 0.34 | 1 | 34118842 | 34119197 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110486161 | LOC106607482 | coding | upstream | 335833 | 33770439 ~ 33783009 (+) |
| LOC110486158 | LOC106607478 | coding | upstream | 465007 | 33637809 ~ 33653835 (+) |
| csf-3 | csf-3 | coding | upstream | 779115 | 33335447 ~ 33339727 (+) |
| LOC110486150 | psd3 | coding | upstream | 791808 | 33320635 ~ 33327034 (+) |
| LOC110485152 | LOC106607471 | coding | upstream | 816416 | 33296758 ~ 33304976 (+) |
| LOC110485153 | LOC106607489 | coding | downstream | 99317 | 34218845 ~ 34221786 (+) |
| LOC110486176 | LOC106607492 | coding | downstream | 145856 | 34265384 ~ 34272808 (+) |
| LOC110486177 | LOC106607493 | coding | downstream | 157708 | 34277236 ~ 34292574 (+) |
| LOC110486178 | LOC106607494 | coding | downstream | 189926 | 34309454 ~ 34366289 (+) |
| LOC110486179 | LOC106607495 | coding | downstream | 247769 | 34367297 ~ 34372229 (+) |
| G1167410 | NA | non-coding | upstream | 1065 | 34117299 ~ 34117777 (+) |
| G1167405 | NA | non-coding | upstream | 11682 | 34106950 ~ 34107160 (+) |
| G1167399 | NA | non-coding | upstream | 22669 | 34095878 ~ 34096173 (+) |
| G1167398 | hoxb3ab | non-coding | upstream | 23754 | 34094492 ~ 34095088 (+) |
| G1167397 | hoxb3aa | non-coding | upstream | 25107 | 34091287 ~ 34093735 (+) |
| G1167412 | hoxb4aa | non-coding | downstream | 327 | 34119855 ~ 34120276 (+) |
| G1167413 | NA | non-coding | downstream | 4165 | 34123693 ~ 34124060 (+) |
| G1167418 | NA | non-coding | downstream | 10245 | 34129773 ~ 34129982 (+) |
| G1167419 | NA | non-coding | downstream | 11212 | 34130740 ~ 34130999 (+) |
| G1167420 | NA | non-coding | downstream | 12985 | 34132513 ~ 34132861 (+) |
| G1166779 | NA | other | upstream | 315177 | 33790640 ~ 33803665 (+) |
| G1166318 | NA | other | upstream | 869634 | 33239953 ~ 33249208 (+) |
| LOC110486146 | LOC106607468 | other | upstream | 888359 | 33001356 ~ 33230495 (+) |
| ifn2 | ifn2 | other | upstream | 1396380 | 32714937 ~ 32722676 (+) |
| LOC110486134 | LOC106600876 | other | upstream | 2008109 | 32001741 ~ 32159164 (+) |
| LOC110486188 | LOC107665142 | other | downstream | 561660 | 34680909 ~ 34687670 (+) |
| G1169121 | LOC106607257 | other | downstream | 1870328 | 35989856 ~ 35992600 (+) |
| G1169207 | NA | other | downstream | 2048100 | 36167628 ~ 36168331 (+) |
| G1169208 | NA | other | downstream | 2050368 | 36169896 ~ 36171571 (+) |
| LOC110486232 | rprml | other | downstream | 2218565 | 36338066 ~ 36339755 (+) |
