G1167428


Basic Information

Item Value
gene id G1167428
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 34148153 ~ 34148778 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1331291
GGTTTATGCACACTTAAAATTTGAATATTTTCATTGGCGAGAGCAGCTATGATTGCGTTTTGCATAATTGTTTTCAAACTTTCTGTGAAACGAAACAGCGTGAGTGTAATGACAGACAAGCACGCCTTACCTTTGTTGATAATCCGTCACTAAATCCTTGGATAGCATCCGCGAGTCTCGCAGCTCGCCATACAGCATTCCTGTTGCCCCAGCTCCGTACCGCCATTAGCGCGCGAAGTCACCACTGTGGCTTTACAGGCCGCCTCCATACCGTTTAATTTACATTAGTCAACAGGACGGAAGCATCCAGTTATGAAAAATGAGACGAGACCCTCCGGTGTGTCCAGATCTCTCACAGTCAGTCACTCTCTCCATCGCAGCGGAAATCACAATCATAGTCGGCCACATTAGCATAGCGCAGGATGAGGAGGCAGGTCTTCCAGTTTCTCTGTAAACACTGCGCGGGACaaggttattttttttaacttcaaCTTGCGATTAAAGAGCCTAGAACCTTGAAGGAGCACAGTGTTGCTACAAAAGGTGCGGTGTCCAAAAGATTGCTGCAATATAACCACTTGGGAAATCATAAAAAGTTCATGTTCACGGTTACCCATCCACATGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1331291 True 626 lncRNA 0.46 1 34148153 34148778

Neighbor

gene id symbol gene type direction distance location
LOC110486161 LOC106607482 coding upstream 365144 33770439 ~ 33783009 (+)
LOC110486158 LOC106607478 coding upstream 494318 33637809 ~ 33653835 (+)
csf-3 csf-3 coding upstream 808426 33335447 ~ 33339727 (+)
LOC110486150 psd3 coding upstream 821119 33320635 ~ 33327034 (+)
LOC110485152 LOC106607471 coding upstream 845727 33296758 ~ 33304976 (+)
LOC110485153 LOC106607489 coding downstream 70067 34218845 ~ 34221786 (+)
LOC110486176 LOC106607492 coding downstream 116606 34265384 ~ 34272808 (+)
LOC110486177 LOC106607493 coding downstream 128458 34277236 ~ 34292574 (+)
LOC110486178 LOC106607494 coding downstream 160676 34309454 ~ 34366289 (+)
LOC110486179 LOC106607495 coding downstream 218519 34367297 ~ 34372229 (+)
G1167420 NA non-coding upstream 15292 34132513 ~ 34132861 (+)
G1167419 NA non-coding upstream 17154 34130740 ~ 34130999 (+)
G1167418 NA non-coding upstream 18171 34129773 ~ 34129982 (+)
G1167413 NA non-coding upstream 24093 34123693 ~ 34124060 (+)
G1167412 hoxb4aa non-coding upstream 27877 34119855 ~ 34120276 (+)
G1167464 NA non-coding downstream 15905 34164683 ~ 34164936 (+)
G1167465 hoxb9ab non-coding downstream 16655 34165433 ~ 34167938 (+)
G1167469 LOC106607488 non-coding downstream 30757 34179535 ~ 34180105 (+)
G1167471 LOC106607488 non-coding downstream 32710 34181488 ~ 34182131 (+)
G1166779 NA other upstream 344488 33790640 ~ 33803665 (+)
G1166318 NA other upstream 898945 33239953 ~ 33249208 (+)
LOC110486146 LOC106607468 other upstream 917670 33001356 ~ 33230495 (+)
ifn2 ifn2 other upstream 1425691 32714937 ~ 32722676 (+)
LOC110486134 LOC106600876 other upstream 2037420 32001741 ~ 32159164 (+)
LOC110486188 LOC107665142 other downstream 532410 34680909 ~ 34687670 (+)
G1169121 LOC106607257 other downstream 1841078 35989856 ~ 35992600 (+)
G1169207 NA other downstream 2018850 36167628 ~ 36168331 (+)
G1169208 NA other downstream 2021118 36169896 ~ 36171571 (+)
LOC110486232 rprml other downstream 2189315 36338066 ~ 36339755 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_01675050_01677339 NA coding CI01000034 null 1674793 ~ 1678699 (-)