XLOC_003069 (tlr8b)


Basic Information

Item Value
gene id XLOC_003069
gene name tlr8b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 43838563 ~ 43850304 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005620
TGACAATCTTGAtagataaaaacaattataaagaaATCTGTCACTACATTCATCTTGTTAAAACAATCTCCATTCATCGCCGAAATACAGAAGAATGCATTTTGACGCACAGGGGCTTTGTCATCAAGGCtattttttgttcattaaaaGGGAAGCAAGTCGCACTCTGAAACTAGAAAGAGGAAATACAGACAATAAAAAGCTGACAGAAATTCCTCAGACATGCCTTCCCCTTCAGAACTGAACACTCTGGTATTGCAGGAAAGATGATTGTTGCGTTCTTTTTGCTATGTACGGTCCACTCATCTGAAGGCTACAACTGGGCTTGGAGAAAACTCCCCTGCGATGTGAATCTCTCCAACACATCCGTCACCTTGGACTGCTCAGAAAGATATTTAAAGAAAATCCCCAAAAACCTGATCTGGAACACAACTAATCTAAACTTAGCAAACAACAAAATACATAACATCTCAAAGGACGCCTTCTGGAACTTAAACAACGTCACATGGATAGACCTAAGAAGAAATCAGATTGAAAAATGCCACGAAAAGGACAATGGGGTTTTCTCAAGACTGACCAACCTGAAGACTCTGCTCCTCGACAATAATAAGATTTCGGTTTTACCCAAAAATCTCCCTGCAGGTCTGCAATGGCTGAGCCTCAATTCCAACCACATCAAATCAATTGAACAGTCAGACTTTAAAGGAATGACTAAACTCACGGTTTTAAAACTAAACAAGAACTGCTATCATAACATCAGTGCAGAATTAACCATTCAGAATGAGACGTTTCAACATTTACAACTGACTGAGCTACAACTGTCCAAAAATGGACTGCATAATGTGCCGTTTGCTTTACCCAGAACCCTTCACAATCTCTCTCTTCTGCTAAACAGGATTGATCATGTTCATGAATCTGATCTAAACCATCTAACACGTCTAAAAGTTCTTGATTTATCTGGAAACTGTCCTATTTGTTTTACCACTCCTTTCCCATGCACAAGCTGTCAGACAAACAATAACGCTCTACAGATTCATCCGAATGCATTCAGCAAACTATCCCAACTGCAAGACCTACGACTATCCGGAAATTCTTTACAAAGCATCAACTCTATGTGGTTCCAAAACCTGACCAACTTAAAGTACTTATATCTTTCCTTTAACTCGCTAATAAGCGAATTTGAAAGCGGACAATTTTTTAGCGTCCTACCGCAAGTGGAGGTTGTCGATATCTCCTACAATAACCCATCGGAAAGGATTTACCCGAGACTAAAACTCTCTGAAGGTTTCTCCAGATTGGAATCCCTCCAAACGCTTCACCTGGAAGGCTATATTTTCCACAAGCTCTCCGAAGACGACCTCCGACCTTTATTTAGTTTACGAAATCTCTCCGTTTTAAATCTGGCCGTCAACTTTCTCCAGCAGGTCAACTTATCGGTGTTCAGGAACTTTCACAACTTGTCTTTAATTTCGTTGATTGACAACAGGCTAACTTTCTCAAGTCCTATCCGAAGATGGGAGGGTCAAAGTAAAAGTGGTTTTAAGGATGATAATCAGGGAGACCACCGCGAAGGACCTTACATTCACACAAATGAAGAGTTCCGCCATTATCCTCCATTCACCAAAGCCGAGTGTCTTGCAACTGGACCAGTTTTGGATCTCAGCAGGAACAACATTTACCACGTCAATCCACCTTTATTCACAGGAGCGGAGAACATCACTTGCCTCAATCTTTCCTCCAATTTCATAGTTTCCTACTTCAACGGCACAGAGTTCGCCCACTTTCCCAAACTCAAGTACCTTGACCTATCTCACAACAGAATCTACATGCATTCAGATTCGGCTTTGAGTGAACTGAAGGCATTAGAAGTTCTGGATCTGAGTCACAATCAACATTATTTTGAAGTGGCGGGTGTCAGAAACTGTCTTACATTTCTAGAAAACCTTCAGTTTCTCAAAGTACTCAATCTGAGTTGGAACGAGATCAACATGCTGACCAATAAAACCCTGCAAAGCGACTCGCTCAACGAACTGCAGTTTCAAGGCAATCGATTGGACATCATGTGGAAGAAGCAACGCGGATACCAAAGTCTCTTTAAATCCCTTTCAAATCTTACATACCTTGATATATCGTATAACAAGCTTAGTGAGATACCAGACGACATCTTCGACTACTTTCCAAAGACGCTAAGATATATTAGCATGAGCAGGAACACGCTCACTGATTTTGCGTGGGAACAGCTCCAAAGTTTACCCCAGCTGGAAACTCTGGATCTGAGTAAAAACAAACTGAGGGTAGTCCCTAGGAAACTATCAAAGCATACACGTTCACTGAAGGTCTTAGACTTGAGCCATAATCAGATCTCAAAGTTAAGGTACAGCTTTCTCGAAAATGTCAAAAGCCTTCAGATCCTCAACTTTGCCAACAACAAGCTGAAGCATCTCGGCGCATCGTCCTTCACAACTGGCAGCAATCACCAGCTGCAAATACTCGATCTGCAGAGAAATCCCATCCACTGCACGTGCAACCTTTTAGACTTCATTCTCTGGTTGGAAAAAAGTGACACGATCCTTCCTCGGCTAGCAACCGATGTCTTATGCGACCTTCCAGAATCCAAAAGAGGGCATCCGATGGTCAGTCTGGACTTTAAAAACGCATGTATCAACAACAGCATTGCTGAGATTTTATACATACTCACTTCGTCAGTCATTACGCTTGTTATGTGTACAACCATCGGCATACATGTGTTCTACTGGGACATATCGTACGCTTATAACTTCTGCATGGCCAGATTTAAGAGCTATTATTTGAAGACGAATGACTGCATCTATGATGCTTTCGTTATGTACGACACCAAGGATCCGATGGTGGCGGAGTGGGTACTCAATCACCTGCGTCTTGAGCTAGAAGATAGAGGAAGACATGTGCGTCCGCTTTGTCTTGAGGAAAGAGATTGGACTCCTGGAATACCAATCATGGATAACCTGAATCTGAGCGTACACCGGAGTAGGAAGACTATATTTGTGTTGACGGAGGGATTTGTTCACAGTGGGATTTTCAAGATGGCGGCTTTCCTAGCGCAACAGCGGCTCCTTGAAGAGGGTGTGGATGTGATGGTGTTGGTTTTGTTGGAGCCGGTTCTTCGTCAGTCGAGGATATTGAACTTGCGACGCTGTCTGTGTGGACACAGTGTGCTGGAGTGGCCGAGAAACCCGGCGGCTGAAGGCTGGTTCTGGCAGAGTTTGAGAAACGCGGTTAGGTTTGAGAGTCAAGGTGTGCaaagtaaaatgtttaaaaattactttaacgGATGA
>TCONS_00005621
ATGATTGTTGCGTTCTTTTTGCTATGTACGGTCCACTCATCTGAAGGCTACAACTGGGCTTGGAGAAAACTCCCCTGCGATGTGAATCTCTCCAACACATCCGTCACCTTGGACTGCTCAGAAAGATATTTAAAGAAAATCCCCAAAAACCTGATCTGGAACACAACTAATCTAAACTTAGCAAACAACAAAATACATAACATCTCAAAGGACGCCTTCTGGAACTTAAACAACGTCACATGGATAGACCTAAGAAGAAATCAGATTGAAAAATGCCACGAAAAGGACAATGGGGTTTTCTCAAGACTGACCAACCTGAAGACTCTGCTCCTCGACAATAATAAGATTTCGGTTTTACCCAAAAATCTCCCTGCAGGTCTGCAATGGCTGAGCCTCAATTCCAACCACATCAAATCAATTGAACAGTCAGACTTTAAAGGAATGACTAAACTCACGGTTTTAAAACTAAACAAGAACTGCTATCATAACATCAGTGCAGAATTAACCATTCAGAATGAGACGTTTCAACATTTACAACTGACTGAGCTACAACTGTCCAAAAATGGACTGCATAATGTGCCGTTTGCTTTACCCAGAACCCTTCACAATCTCTCTCTTCTGCTAAACAGGATTGATCATGTTCATGAATCTGATCTAAACCATCTAACACGTCTAAAAGTTCTTGATTTATCTGGAAACTGTCCTATTTGTTTTACCACTCCTTTCCCATGCACAAGCTGTCAGACAAACAATAACGCTCTACAGATTCATCCGAATGCATTCAGCAAACTATCCCAACTGCAAGACCTACGACTATCCGGAAATTCTTTACAAAGCATCAACTCTATGTGGTTCCAAAACCTGACCAACTTAAAGTACTTATATCTTTCCTTTAACTCGCTAATAAGCGAATTTGAAAGCGGACAATTTTTTAGCGTCCTACCGCAAGTGGAGGTTGTCGATATCTCCTACAATAACCCATCGGAAAGGATTTACCCGAGACTAAAACTCTCTGAAGGTTTCTCCAGATTGGAATCCCTCCAAACGCTTCACCTGGAAGGCTATATTTTCCACAAGCTCTCCGAAGACGACCTCCGACCTTTATTTAGTTTACGAAATCTCTCCGTTTTAAATCTGGCCGTCAACTTTCTCCAGCAGGTCAACTTATCGGTGTTCAGGAACTTTCACAACTTGTCTTTAATTTCGTTGATTGACAACAGGCTAACTTTCTCAAGTCCTATCCGAAGATGGGAGGGTCAAAGTAAAAGTGGTTTTAAGGATGATAATCAGGGAGACCACCGCGAAGGACCTTACATTCACACAAATGAAGAGTTCCGCCATTATCCTCCATTCACCAAAGCCGAGTGTCTTGCAACTGGACCAGTTTTGGATCTCAGCAGGAACAACATTTACCACGTCAATCCACCTTTATTCACAGGAGCGGAGAACATCACTTGCCTCAATCTTTCCTCCAATTTCATAGTTTCCTACTTCAACGGCACAGAGTTCGCCCACTTTCCCAAACTCAAGTACCTTGACCTATCTCACAACAGAATCTACATGCATTCAGATTCGGCTTTGAGTGAACTGAAGGCATTAGAAGTTCTGGATCTGAGTCACAATCAACATTATTTTGAAGTGGCGGGTGTCAGAAACTGTCTTACATTTCTAGAAAACCTTCAGTTTCTCAAAGTACTCAATCTGAGTTGGAACGAGATCAACATGCTGACCAATAAAACCCTGCAAAGCGACTCGCTCAACGAACTGCAGTTTCAAGGCAATCGATTGGACATCATGTGGAAGAAGCAACGCGGATACCAAAGTCTCTTTAAATCCCTTTCAAATCTTACATACCTTGATATATCGTATAACAAGCTTAGTGAGATACCAGACGACATCTTCGACTACTTTCCAAAGACGCTAAGATATATTAGCATGAGCAGGAACACGCTCACTGATTTTGCGTGGGAACAGCTCCAAAGTTTACCCCAGCTGGAAACTCTGGATCTGAGTAAAAACAAACTGAGGGTAGTCCCTAGGAAACTATCAAAGCATACACGTTCACTGAAGGTCTTAGACTTGAGCCATAATCAGATCTCAAAGTTAAGGTACAGCTTTCTCGAAAATGTCAAAAGCCTTCAGATCCTCAACTTTGCCAACAACAAGCTGAAGCATCTCGGCGCATCGTCCTTCACAACTGGCAGCAATCACCAGCTGCAAATACTCGATCTGCAGAGAAATCCCATCCACTGCACGTGCAACCTTTTAGACTTCATTCTCTGGTTGGAAAAAAGTGACACGATCCTTCCTCGGCTAGCAACCGATGTCTTATGCGACCTTCCAGAATCCAAAAGAGGGCATCCGATGGTCAGTCTGGACTTTAAAAACGCATGTATCAACAACAGC

Function

symbol description
tlr8b Predicted to enable transmembrane signaling receptor activity. Predicted to act upstream of or within inflammatory response; innate immune response; and toll-like receptor signaling pathway. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in blood; heart; integument; and musculature system. Orthologous to human TLR8 (toll like receptor 8).

GO:

id name namespace
GO:0034158 toll-like receptor 8 signaling pathway biological_process
GO:0045087 innate immune response biological_process
GO:0045089 positive regulation of innate immune response biological_process
GO:0006954 inflammatory response biological_process
GO:0002376 immune system process biological_process
GO:0051607 defense response to virus biological_process
GO:0002755 MyD88-dependent toll-like receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003677 DNA binding molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040219-12 Predicted to enable transmembrane signaling receptor activity. Predicted to act upstream of or within inflammatory response; innate immune response; and toll-like receptor signaling pathway. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in blood; heart; integument; and musculature system. Orthologous to human TLR8 (toll like receptor 8).

Ensembl:

ensembl_id ENSDARG00000073675

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005620 False 3314 mRNA 0.43 3 43838563 43850304
TCONS_00005621 True 2406 mRNA 0.42 2 43839205 43844537

Neighbor

gene id symbol gene type direction distance location
XLOC_003068 CT583727.1 coding downstream 5895 43831882 ~ 43832668 (-)
XLOC_003067 arrdc3b coding downstream 67116 43761480 ~ 43771447 (-)
XLOC_003066 cetn3 coding downstream 79031 43705795 ~ 43759532 (-)
XLOC_003065 mef2ca coding downstream 183114 43544814 ~ 43655449 (-)
XLOC_003064 dre-mir-9-2 coding downstream 302468 43535960 ~ 43536095 (-)
XLOC_003070 mctp1b coding upstream 12660 43862964 ~ 43928937 (-)
XLOC_003071 sept5b coding upstream 85948 43936252 ~ 43964028 (-)
XLOC_003072 acads coding upstream 148959 43999263 ~ 44017665 (-)
XLOC_003073 crybb1 coding upstream 170843 44021147 ~ 44027391 (-)
XLOC_003074 CABZ01087091.1 coding upstream 389540 44239844 ~ 44241119 (-)
XLOC_003062 NA non-coding downstream 298379 43453171 ~ 43540184 (-)
XLOC_003063 NA non-coding downstream 342347 43484627 ~ 43496216 (-)
XLOC_003057 CU326366.3 non-coding downstream 926516 42911933 ~ 42912047 (-)
XLOC_003075 CABZ01085662.1 non-coding upstream 391932 44242236 ~ 44253104 (-)
XLOC_003076 CABZ01074708.1 non-coding upstream 418177 44268481 ~ 44275885 (-)
XLOC_003080 NA non-coding upstream 530614 44380918 ~ 44387802 (-)
XLOC_003084 CABZ01072084.1 non-coding upstream 643615 44493919 ~ 44501719 (-)
XLOC_003090 NA non-coding upstream 1123932 44974236 ~ 44976643 (-)

Expression


Co-expression Network